Works matching IS 14712105 AND DT 2010 AND VI 11

Results: 867

The Musite open-source framework for phosphorylation-site prediction.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S9

By:

Gao, Jianjiong;
Dong Xu

Publication type:

Article

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S8

By:

Antezana, Erick;
Venkatesan, Aravind;
Mungall, Chris;
Mironov, Vladimir;
Kuiper, Martin

Publication type:

Article

SADI, SHARE, and the in silico scientific method.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S7

By:

Wilkinson, Mark D.;
McCarthy, Luke;
Vandervalk, Benjamin;
Withers, David;
Kawas, Edward;
Samadian, Soroush

Publication type:

Article

WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S6

By:

Lichtenberg, Jens;
Kurz, Kyle;
Xiaoyu Liang;
Al-ouran, Rami;
Neiman, Lev;
Nau, Lee J.;
Welch, Joshua D.;
Jacox, Edwin;
Bitterman, Thomas;
Ecker, Klaus;
Elnitski, Laura;
Drews, Frank;
Lee, Stephen Sauchi;
Welch, Lonnie R.

Publication type:

Article

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S12

By:

Swertz, Morris A.;
Dijkstra, Martijn;
Adamusiak, Tomasz;
van der Velde, Joeri K.;
Kanterakis, Alexandros;
Roos, Erik T.;
Lops, Joris;
Thorisson, Gudmundur A.;
Arends, Danny;
Byelas, George;
Muilu, Juha;
Brookes, Anthony J.;
de Brock, Engbert O.;
Jansen, Ritsert C.;
Parkinson, Helen

Publication type:

Article

Galaxy CloudMan: delivering cloud compute clusters.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S4

By:

Afgan, Enis;
Baker, Dannon;
Coraor, Nate;
Chapman, Brad;
Nekrutenko, Anton;
Taylor, James

Publication type:

Article

Hybrid cloud and cluster computing paradigms for life science applications.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S3

By:

Judy Qiu;
Ekanayake, Jaliya;
Gunarathne, Thilina;
Jong Youl Choi;
Seung-Hee Bae;
Hui Li;
Bingjing Zhang;
Tak-Lon Wu;
Yang Ruan;
Ekanayake, Saliya;
Hughes, Adam;
Fox, Geoffrey

Publication type:

Article

SeqWare Query Engine: storing and searching sequence data in the cloud.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S2

By:

O'Connor, Brian D.;
Merriman, Barry;
Nelson, Stanley F.

Publication type:

Article

IPRStats: visualization of the functional potential of an InterProScan run.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S13

By:

Kelly, Ryan J.;
Vincent, David E.;
Friedberg, Iddo

Publication type:

Article

Community-driven computational biology with Debian Linux.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S5

By:

Möller, Steffen;
Krabbenhöft, Hajo Nils;
Tille, Andreas;
Paleino, David;
Williams, Alan;
Wolstencroft, Katy;
Goble, Carole;
Holland, Richard;
Belhachemi, Dominique;
Plessy, Charles

Publication type:

Article

An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S11

By:

Gautier, Laurent

Publication type:

Article

interPopula: a Python API to access the HapMap Project dataset.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S10

By:

Antao, Tiago

Publication type:

Article

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S1

By:

Taylor, Ronald C.

Publication type:

Article

Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S9

By:

Yixiang Shi;
Yi-Xue Li;
Yuan-Yuan Li

Publication type:

Article

RecMotif: a novel fast algorithm for weak motif discovery.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S8

By:

He Quan Sun;
Low, Malcolm Yoke Hean;
Wen Jing Hsu;
Rajapakse, Jagath C.

Publication type:

Article

Gene-centric association analysis for the correlation between the guanine-cytosine content levels and temperature range conditions of prokaryotic species.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S7

By:

Hao Zheng;
Hongwei Wu

Publication type:

Article

Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S6

By:

Shao Li;
Bo Zhang;
Duo Jiang;
Yingying Wei;
Ningbo Zhang

Publication type:

Article

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S5

By:

Qi Liu;
Yejun Tan;
Tao Huang;
Guohui Ding;
Zhidong Tu;
Lei Liu;
Yixue Li;
Hongyue Dai;
Lu Xie

Publication type:

Article

Integer programming-based method for grammar-based tree compression and its application to pattern extraction of glycan tree structures.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S4

By:

Yang Zhao;
Hayashida, Morihiro;
Akutsu, Tatsuya

Publication type:

Article

Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S3

By:

Liping Jing;
Ng, Michael K.

Publication type:

Article

Improved protein surface comparison and application to low-resolution protein structure data.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S2

By:

Sael1, Lee;
Kihara, Daisuke

Publication type:

Article

Sorting out inherent features of head-to-head gene pairs by evolutionary conservation.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S16

By:

Yun-Qin Chen;
Hui Yu;
Yi-Xue Li;
Yuan-Yuan Li

Publication type:

Article

A novel parametric approach to mine gene regulatory relationship from microarray datasets.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S15

By:

Wanlin Liu;
Dong Li;
Qijun Liu;
Yunping Zhu;
Fuchu He

Publication type:

Article

The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S14

By:

Kang Ning;
Nesvizhskii, Alexey I.

Publication type:

Article

Revealing parasite influence in metabolic pathways in Apicomplexa infected patients.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S13

By:

Tao Xu;
Jie Ping;
Yao Yu;
Fudong Yu;
Yongtao Yu;
Pei Hao;
Xuan Li

Publication type:

Article

Detection and reconstruction of tandemly organized de novo copy number variations.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S12

By:

Dan He;
Furlotte, Nicholas;
Eskin, Eleazar

Publication type:

Article

MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S11

By:

Jiandong Ding;
Shuigeng Zhou;
Jihong Guan

Publication type:

Article

Accurate HLA type inference using a weighted similarity graph.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S10

By:

Minzhu Xie;
Jing Li;
Tao Jiang

Publication type:

Article

Association of tissue lineage and gene expression: conservatively and differentially expressed genes define common and special functions of tissues.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S11-S1

By:

Yao Yu;
Tao Xu;
Yongtao Yu;
Pei Hao;
Xuan Li

Publication type:

Article

Sixth International Society for Computational Biology (ISCB) Student Council Symposium Boston, MA, USA. 9 July 2010. Abstracts.

Published in:: 2010
Publication type:: Abstract

Human protein-protein interaction prediction.

Published in:

2010

By:

McDowall, Mark D.;
Scott, Michelle S.;
Barton, Geoffrey J.

Publication type:

Abstract

Analysis of the functional properties of the creatine kinase system using a multiscale 'sloppy' modeling approach.

Published in:

2010

By:

Hettling, Hannes;
Heringa, Jaap;
van Beek, Johannes HGM

Publication type:

Abstract

Next generation genome annotation with mGene.ngs.

Published in:

2010

By:

Behr, Jonas;
Bohnert, Regina;
Zeller, Georg;
Schweikert, Gabriele;
Hartmann, Lisa;
Rätsch, Gunnar

Publication type:

Abstract

is-rSNP: a novel technique for in silico regulatory SNP detection.

Published in:

2010

By:

Macintyre, Geoff;
Bailey, James;
Haviv, Izhak;
Kowalczyk, Adam

Publication type:

Abstract

Genome wide association study of nonsynonymous Single Nucleotide Polymorphisms for seven common diseases.

Published in:

2010

By:

Surendran, Praveen;
Stanton, Alice;
Shields, Denis

Publication type:

Abstract

A hidden Markov model for detecting multi-gene chromatin domains.

Published in:

2010

By:

Larson, Jessica;
Guocheng Yuan

Publication type:

Abstract

Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.

Published in:

2010

By:

Fuxiao Xin;
Myers, Steven;
Yong Fuga Li;
Cooper, David N.;
Mooney, Sean D.;
Radivojac, Predrag

Publication type:

Abstract

Exploiting physical properties in protein structure alignment.

Published in:

2010

By:

Shah, Shweta;
Sahinidis, Nick

Publication type:

Abstract

Bridging the gaps: atomic simulation of macromolecular environment brings together protein docking, interaction kinetics and the crowding effects.

Published in:

2010

By:

Li, Xiaofan F.;
Moal, Iain H.;
Bates, Paul A.

Publication type:

Abstract

A bioengineering approach for rational vaccine design towards the Ebola Virus.

Published in:

2010

By:

Banton, Sophia;
Zvi Roth;
Pavlovic, Mirjana

Publication type:

Abstract

A computational pipeline for diagnostic biomarker discovery in the human pathogen Trypanosoma cruzi.

Published in:

2010

By:

Carmona, Santiago J.;
Sartor, Paula;
Leguizamón, Maria Susana;
Campetella, Oscar;
Agüero, Fernán

Publication type:

Abstract

Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens.

Published in:

2010

By:

Magariños, María Paula;
Overington, John;
Carmona, Santiago;
Shanmugam, Dhanasekaran;
Doyle, Maria;
Ralph, Stuart;
Crowther, Greg;
Hertz-Fowler, Christiane;
Nwaka, Solomon;
Berriman, Matt;
Roos, David;
Van Voorhis, Wes;
Agüero, Fernán

Publication type:

Abstract

Modeling protein-peptide interactions using protein fragments: fitting the pieces?

Published in:

2010

By:

Vanhee, Peter;
Stricher, Francois;
Baeten, Lies;
Verschueren, Erik;
Serrano, Luis;
Rousseau, Frederic;
Schymkowitz, Joost

Publication type:

Abstract

Highlights from the 6th International Society for Computational Biology Student Council Symposium at the 18th Annual International Conference on Intelligent Systems for Molecular Biology.

Published in:

2010

By:

Klijn, Christiaan;
Michaut, Magali;
Abeel, Thomas

Publication type:

Proceeding

Proceedings of the 2010 AMIA Summit on Translational Bioinformatics, March 10-12, 2010, San Francisco, CA, USA.

Published in:: BMC Bioinformatics, 2010, v. 11, p. S1
Publication type:: Article

Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Rouchka, Eric;
Montoya-Durango, Diego E.;
Stribinskis, Vilius;
Ramos, Kenneth;
Kalbfleisch, Ted

Publication type:

Article

Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Yang, Xinan;
Lee, Younghee;
Huang, Yong;
Chen, James L.;
Xing, Rosie H.;
Lussier, Yves A.

Publication type:

Article

Feasibility of incorporating genomic knowledge into electronic medical records for pharmacogenomic clinical decision support.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Overby, Casey Lynnette;
Tarczy-Hornoch, Peter;
Hoath, James I.;
Kalet, Ira J.;
Veenstra, David L.

Publication type:

Article

An integrative method for scoring candidate genes from association studies: application to warfarin dosing.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Tatonetti, Nicholas P.;
Dudley, Joel T.;
Sagreiya, Hersh;
Butte, Atul J.;
Altman, Russ B.

Publication type:

Article

Assessing the quality of annotations in asthma gene expression experiments.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Lacson, Ronilda;
Mbagwu, Michael;
Yousif, Hisham;
Ohno-Machado, Lucila

Publication type:

Article