Works matching IS 14712105 AND DT 2008 AND VI 9

Results: 747

IDEA: Interactive Display for Evolutionary Analyses.

Published in:

BMC Bioinformatics, 2008, v. 9, n. 1, p. 1, doi. 10.1186/1471-2105-9-524

By:

Simons, Rain;
Mahurkar, Anup;
Crabtree, Jonathan;
Badger, Jonathan H;
Carlton, Jane M;
Silva, Joana C

Publication type:

Article

VarDetect: a nucleotide sequence variation exploratory tool.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S9

By:

Ngamphiw, Chumpol;
Kulawonganunchai, Supasak;
Assawamakin, Anunchai;
Jenwitheesuk, Ekachai;
Tongsima, Sissades

Publication type:

Article

Fast splice site detection using information content and feature reduction.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S8

By:

Baten, A. K. M. A.;
Halgamuge, S. K.;
Chang, B. C. H.

Publication type:

Article

Extracting transcription factor binding sites from unaligned gene sequences with statistical models.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S7

By:

Chung-Chin Lu;
Wei-Hao Yuan;
Te-Ming Chen

Publication type:

Article

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S6

By:

Cheng-Wei Cheng;
Chia-Yu Su, Emily;
Jenn-Kang Hwang;
Ting-Yi Sung;
Wen-Lian Hsu

Publication type:

Article

Finding microRNA regulatory modules in human genome using rule induction.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S5

By:

Dang Hung Tran;
Satou, Kenji;
Tu Bao Ho

Publication type:

Article

MiRTif: a support vector machine-based microRNA target interaction filter.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S4

By:

Yuchen Yang;
Yu-Ping Wang;
Kuo-Bin Li

Publication type:

Article

Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S20

By:

Xiaojing Wang;
Di Wu;
Siyuan Zheng;
Jing Sun;
Lin Tao;
Yixue Li;
Zhiwei Cao

Publication type:

Article

Using a kernel density estimation based classifier to predict species-specific microRNA precursors.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S2

By:

Tien-Hao Chang, Darby;
Chih-Ching Wang;
Jian-Wei Chen

Publication type:

Article

Filtering of false positive microRNA candidates by a clustering-based approach.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S3

By:

Wing-Sze Leung;
Lin, Marie C. M.;
Cheung, David W.;
Yiu, S. M.

Publication type:

Article

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S19

By:

Jin Ok Yang;
Sohyun Hwang;
Jeongsu Oh;
Jong Bhak;
Tae-Kwon Sohn

Publication type:

Article

Semi-automatic conversion of BioProp semantic annotation to PASBio annotation.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S18

By:

Tzong-Han Tsai, Richard;
Hong-Jie Dai;
Chi-Hsin Huang;
Wen-Lian Hsu

Publication type:

Article

CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S25

By:

Gaikwad, Jitendra;
Khanna, Varun;
Vemulpad, Subramanyam;
Jamie, Joanne;
Kohen, Jim;
Ranganathan, Shoba

Publication type:

Article

An Integrated Korean Biodiversity and Genetic Information Retrieval System.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S24

By:

Jeongheui Lim;
Jong Bhak;
Hee-Mock Oh;
Chang-Bae Kim;
Yong-Ha Park;
Woon Kee Paek

Publication type:

Article

A protein interaction based model for schizophrenia study.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S23

By:

Pei-Chun Hsu;
Ueng-Cheng Yang;
Kuan-Hui Shih;
Chih-Min Liu;
Yu-Li Liu;
Hai-Gwo Hwu

Publication type:

Article

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S22

By:

Hong Huang Lin;
Guang Lan Zhang;
Songsak Tongchusak;
Reinherz, Ellis L.;
Brusic, Vladimir

Publication type:

Article

The value of position-specific scoring matrices for assessment of protein allegenicity.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S21

By:

Shen Jean Lim;
Joo Chuan Tong;
Fook Tim Chew;
Tammi, Martti T.

Publication type:

Article

Dynamic sensitivity analysis of biological systems.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S17

By:

Wu Hsiung Wu;
Feng Sheng Wang;
Maw Shang Chang

Publication type:

Article

Predicted mouse peroxisome-targeted proteins and their actual subcellular locations.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S16

By:

Mizuno, Yumi;
Kurochkin, Igor V.;
Herberth, Marlis;
Okazaki, Yasushi;
Schönbach, Christian

Publication type:

Article

Flanking signal and mature peptide residues influence signal peptide cleavage.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S15

By:

Khar Heng Choo;
Ranganathan, Shoba

Publication type:

Article

Molecular docking studies of dithionitrobenzoic acid and its related compounds to protein disulfide isomerase: computational screening of inhibitors to HIV-1 entry.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S14

By:

Gowthaman, Uthaman;
Jayakanthan, Mannu;
Sundar, Durai

Publication type:

Article

WSPMaker: a web tool for calculating selection pressure in proteins and domains using window-sliding.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S13

By:

Yong Seok Lee;
Tae-Hyung Kim;
Tae-Wook Kang;
Won-Hyong Chung;
Gwang-Sik Shin

Publication type:

Article

Real value prediction of protein solvent accessibility using enhanced PSSM features.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S12

By:

Tien-Hao Chang, Darby;
Hsuan-Yu Huang;
Yu-Tang Syu;
Chih-Peng Wu

Publication type:

Article

Ortholog-based protein-protein interaction prediction and its application to inter-species interactions.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S11

By:

Sheng-An Lee;
Cheng-hsiung Chan;
Chi-Hung Tsai;
Jin-Mei Lai;
Feng-Sheng Wang;
Cheng-Yan Kao;
Huang, Chi-Ying F.

Publication type:

Article

Functional analysis of novel SNPs and mutations in human and mouse genomes.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S10

By:

Chuan-Kun Liu;
Yan-Hau Chen;
Cheng-Yang Tang;
Shu-Chuan Chang;
Yi-Jung Lin;
Ming-Fang Tsai;
Yuan-Tsong Chen;
Yao, Adam

Publication type:

Article

Accelerating the annotation of sparse named entities by dynamic sentence selection.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S8

By:

Tsuruoka, Yoshimasa;
Tsujii, Jun'ichi;
Ananiadou, Sophia

Publication type:

Article

Disambiguation of biomedical text using diverse sources of information.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S7

By:

Stevenson, Mark;
Yikun Guo;
Gaizauskas, Robert;
Martinez, David

Publication type:

Article

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S2

By:

Airola, Antti;
Pyysalo, Sampo;
Björne, Jari;
Pahikkala, Tapio;
Ginter, Filip;
Salakoski, Tapio

Publication type:

Article

Emerging strengths in Asia Pacific bioinformatics.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S1

By:

Ranganathan, Shoba;
Wen-Lian Hsu;
Ueng-Cheng Yang;
Tin Wee Tan

Publication type:

Article

Automatic inference of indexing rules for MEDLINE.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S11

By:

Névéol, Aurélie;
Shooshan, Sonya E.;
Claveau, Vincent

Publication type:

Article

Mining clinical relationships from patient narratives.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S3

By:

Roberts, Angus;
Gaizauskas, Robert;
Hepple, Mark;
Yikun Guo

Publication type:

Article

The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S9

By:

Vincze, Veronika;
Szarvas, György;
Farkas, Richárd;
Móra, György;
Csirik, János

Publication type:

Article

Distinguishing the species of biomedical named entities for term identification.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S6

By:

Xinglong Wang;
Matthews, Michael

Publication type:

Article

How to make the most of NE dictionaries in statistical NER.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S5

By:

Sasaki, Yutaka;
Tsuruoka, Yoshimasa;
McNaught, John;
Ananiadou, Sophia

Publication type:

Article

Cascaded classifiers for confidence-based chemical named entity recognition.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S4

By:

Corbett, Peter;
Copestake, Ann

Publication type:

Article

Robust consensus computation.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P4

By:

Rausch, Tobias;
Emde, Anne-Katrin;
Reinert, Knut

Publication type:

Article

Themes in biomedical natural language processing: BioNLP08.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S1

By:

Demner-Fushman, Dina;
Ananiadou, Sophia;
Cohen, K. Bretonnel;
Pestian, John;
Tsujii, Jun'ichi;
Webber, Bonnie

Publication type:

Article

Abstracts of the Fourth International Society for Computational Biology (ISCB) Student Council Symposium. Toronto, Canada. July 18, 2008.

Published in:: 2008
Publication type:: Abstract

Quantitative systems-level determinants of drug targets.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P6

By:

Lixia Yao;
Rzhetsky, Andrey

Publication type:

Article

TrypanoCyc -- a metabolic pathway database for Trypanosoma brucei.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P5

By:

Chukualim, Bridget;
Peters, Nick;
Fowler, Christiane Hertz;
Berriman, Matthew

Publication type:

Article

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S11-S10

By:

Kilicoglu, Halil;
Bergler, Sabine

Publication type:

Article

Protein evolution driven by symmetric structural repeats.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P3

By:

Abraham, Anne-Laure;
Pothier, Joël;
Rocha, Eduardo P. C.

Publication type:

Article

Exon level integration of proteomics and microarray data.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P2

By:

Bitton, Danny A.;
Okoniewski, Michał J.;
Connolly, Yvonne;
Miller, Crispin J.

Publication type:

Article

Revealing sequence variation patterns in rice with machine learning methods.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O8

By:

Bohnert, Regina;
Zeller, Georg;
Clark, Richard M.;
Childs, Kevin L.;
Ulat, Victor;
Stokowski, Renee;
Ballinger, Dennis;
Frazer, Kelly;
Cox, David;
Bruskiewich, Richard;
Buell, C. Robin;
Leach, Jan;
Hei Leung;
McNally, Kenneth L.;
Weigel, Detlef;
Rätsch, Gunnar

Publication type:

Article

Comparative analysis of non-classically secreted proteins in Botrytis cinerea and symbiotic fungus Laccaria bicolor.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O3

By:

Jain, Preti;
Podila, Gopi K.;
Davis, Maria R.

Publication type:

Article

Competition between protein aggregation and protein complex formation.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O2

By:

Pechmann, Sebastian;
Levy, Emmanuel D.;
Tartaglia, Gian G.;
Vendruscolo, Michele

Publication type:

Article

InteroPORC: an automated tool to predict highly conserved protein interaction networks.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-P1

By:

Michaut, Magali;
Kerrien, Samuel;
Montecchi-Palazzi, Luisa;
Cassier-Chauvat, Corinne;
Chauvat, Franck;
Aude, Jean-Christophe;
Legrain, Pierre;
Hermjakob, Henning

Publication type:

Article

Public microarray repository semantic annotation with ontologies employing text mining and expression profile correlation.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O5

By:

Ruau, David;
Kolárik, Corinna;
Mevissen, Heinz-Theodor;
Müller, Emmanuel;
Assent, Ira;
Krieger, Ralph;
Seidl, Thomas;
Hofmann-Apitius, Martin;
Zenke, Martin

Publication type:

Article

Discovering relationships among dispersed repeats using spatial association rule mining.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O4

By:

Saha, Surya;
Bridges, Susan;
Magbanua, Zenaida;
Peterson, Daniel G.

Publication type:

Article

Optimal spliced alignments of short sequence reads.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O7

By:

De Bona, Fabio;
Ossowski, Stephan;
Schneeberger, Korbinian;
Rätsch, Gunnar

Publication type:

Article