Works matching IS 14712105 AND DT 2003 AND VI 4

Results: 66

Statistical significance for hierarchical clustering in genetic association and microarray expression studies.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 62, doi. 10.1186/1471-2105-4-62

By:

Levenstien, Mark A.;
Yaning Yang;
Ott, Jürg

Publication type:

Article

PubMatrix: a tool for multiplex literature mining.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 61, doi. 10.1186/1471-2105-4-61

By:

Becker, Kevin G.;
Hosack, Douglas A.;
Dennis Jr., Glynn;
Lempicki, Richard A.;
Bright, Tiffani J.;
Cheadle, Chris;
Engel, Jim

Publication type:

Article

Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 1

By:

Nazina, Anna G.;
Papatsenko, Dmitri A.

Publication type:

Article

The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 64, doi. 10.1186/1471-2105-4-64

By:

Ciccarelli, Francesca D.;
Izaurralde, Elisa;
Bork, Peer

Publication type:

Article

AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 63, doi. 10.1186/1471-2105-4-63

By:

Badidi, Elarbi;
De Sousa, Cristina;
Lang, B. Franz;
Burger, Gertraud

Publication type:

Article

Fast and sensitive multiple alignment of large genomic sequences.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 66, doi. 10.1186/1471-2105-4-66

By:

Brudno, Michael;
Chapman, Michael;
Göttgens, Berthold;
Batzoglou, Serafim;
Morgenstern, Burkhard

Publication type:

Article

Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 60, doi. 10.1186/1471-2105-4-60

By:

Junbai Wang;
Bø, Trond Hellem;
Jonassen, Inge;
Myklebost, Ola;
Hovig, Eivind

Publication type:

Article

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 59

By:

Culhane, Aedín C.;
Perrière, Guy;
Higgins, Desmond G.

Publication type:

Article

Online tool for the discrimination of equi-distributions.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 58, doi. 10.1186/1471-2105-4-58

By:

Pöschel, Thorsten;
Frömmel, Cornelius;
Gille, Christoph

Publication type:

Article

Conservation of regulatory elements between two species of Drosophila.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 57, doi. 10.1186/1471-2105-4-57

By:

Emberly, Eldon;
Rajewsky, Nikolaus;
Siggia, Eric D.

Publication type:

Article

PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 1

By:

Deyun Pan;
Ning Sun;
Kei-Hoi Cheung;
Zhong Guan;
Ligeng Ma;
Holford, Matthew;
Xingwang Deng;
Hongyu Zhao

Publication type:

Article

Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 55, doi. 10.1186/1471-2105-4-55

By:

Washietl, Stefan;
Eisenhaber, Frank

Publication type:

Article

Entropy-based gene ranking without selection bias for the predictive classification of microarray data.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 54, doi. 10.1186/1471-2105-4-54

By:

Furlanello, Cesare;
Serafini, Maria;
Merler, Stefano;
Jurman, Giuseppe

Publication type:

Article

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 53, doi. 10.1186/1471-2105-4-53

By:

Vernikos, Georgios S.;
Gkogkas, Christos G.;
Promponas, Vasilis J.;
Hamodrakas, Stavros J.

Publication type:

Article

LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 52, doi. 10.1186/1471-2105-4-52

By:

Wise, Michael J.

Publication type:

Article

A knowledge discovery object model API for Java.

Published in:

2003

By:

Zuyderduyn, Scott D.;
Jones, Steven J. M.

Publication type:

Product Review

Eval: A software package for analysis of genome annotations.

Published in:

2003

By:

Keibler, Evan;
Brent, Michael R.

Publication type:

Product Review

The TROVE module: A common element in Telomerase, Ro and Vault ribonucleoproteins.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 49, doi. 10.1186/1471-2105-4-49

By:

Bateman, Alex;
Kickhoefer, Valerie

Publication type:

Article

Trustworthiness and metrics in visualizing similarity of gene expression.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 48, doi. 10.1186/1471-2105-4-48

By:

Kaski, Samuel;
Nikkilä, Janne;
Oja, Merja;
Venna, Jarkko;
Törönen, Petri;
Castrén, Eero

Publication type:

Article

OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 47

By:

Raghava, G. P. S.;
Searle, Stephen M. J.;
Audley, Patrick C.;
Barber, Jonathan D.;
Barton, Geoffrey J.

Publication type:

Article

Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 46, doi. 10.1186/1471-2105-4-46

By:

Grynberg, Marcin;
Jaroszewski, Lukasz;
Godzik, Adam

Publication type:

Article

Visualisation and graph-theoretic analysis of a large-scale protein structural interactome.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 45, doi. 10.1186/1471-2105-4-45

By:

Bolser, Dan;
Dafas, Panos;
Harrington, Richard;
Park, Jong;
Schroeder, Michael

Publication type:

Article

RSEARCH: Finding homologs of single structured RNA sequences.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 44, doi. 10.1186/1471-2105-4-44

By:

Klein, Robert J.;
Eddy, Sean R.

Publication type:

Article

Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 43, doi. 10.1186/1471-2105-4-43

By:

Yee Leng Yap;
Xue Wu Zhang;
Danchin, Antoine

Publication type:

Article

Molecular phylogeny of the kelch-repeat superfamily reveals an expansion of BTB/kelch proteins in animals.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 42, doi. 10.1186/1471-2105-4-42

By:

Prag, Soren;
Adams, Josephine C.

Publication type:

Article

The COG database: an updated version includes eukaryotes.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 41, doi. 10.1186/1471-2105-4-41

By:

Tatusov, Roman L.;
Fedorova, Natalie D.;
Jackson, John D.;
Jacobs, Aviva R.;
Kiryutin, Boris;
Koonin, Eugene V.;
Krylov, Dmitri M.;
Mazumder, Raja;
Mekhedov, Sergei L.;
Nikolskaya, Anastasia N.;
Rao, B. Sridhar;
Smirnov, Sergei;
Sverdlov, Alexander V.;
Vasudevan, Sona;
Wolf, Yuri I.;
Yin, Jodie J.;
Natale, Darren A.

Publication type:

Article

Probabilistic estimation of microarray data reliability and underlying gene expression.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 40, doi. 10.1186/1471-2105-4-40

By:

Bilke, Sven;
Breslin, Thomas;
Sigvardsson, Mikael

Publication type:

Article

Genome-wide prediction, display and refinement of binding sites with information theory-based models.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 38, doi. 10.1186/1471-2105-4-38

By:

Gadiraju, Sashidhar;
Vyhlidal, Carrie A.;
Leeder, J. Steven;
Rogan, Peter K.

Publication type:

Article

cDNA2Genome: A tool for mapping and annotating cDNAs.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 39, doi. 10.1186/1471-2105-4-39

By:

Del Val, Coral;
Glatting, Karl-Heinz;
Suhai, Sandor

Publication type:

Article

Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 37, doi. 10.1186/1471-2105-4-37

By:

Galfalvy, Hanga C.;
Erraji-Benchekroun, Loubna;
Smyrniotopoulos, Peggy;
Pavlidis, Paul;
Ellis, Steven P.;
Mann, J. John;
Sibille, Etienne;
Arango, Victoria

Publication type:

Article

Cluster stability scores for microarray data in cancer studies.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 36, doi. 10.1186/1471-2105-4-36

By:

Smolkin, Mark;
Ghosh, Debashis

Publication type:

Article

OrthoParaMap: Distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 35, doi. 10.1186/1471-2105-4-35

By:

Cannon, Steven B.;
Young, Nevin D.

Publication type:

Article

ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 34, doi. 10.1186/1471-2105-4-34

By:

Shakhnovich, Boris E.;
Harvey, John M.;
Comeau, Steve;
Lorenz, David;
DeLisi, Charles;
Shakhnovich, Eugene

Publication type:

Article

Evaluation of normalization methods for microarray data.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 33, doi. 10.1186/1471-2105-4-33

By:

Park, Taesung;
Sung-Gon Yi;
Sung-Hyun Kang;
SeungYeoun Lee;
Yong-Sung Lee;
Simon, Richard

Publication type:

Article

The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD).

Published in:

BMC Bioinformatics, 2003, v. 4, p. 32, doi. 10.1186/1471-2105-4-32

By:

Killion, Patrick J.;
Sherlock, Gavin;
Iyer, Vishwanath R.

Publication type:

Article

Comparison of mode estimation methods and application in molecular clock analysis.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 31, doi. 10.1186/1471-2105-4-31

By:

Hedges, S. Blair;
Shah, Prachi

Publication type:

Article

Evolutionary algorithms for the selection of single nucleotide polymorphisms.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 30, doi. 10.1186/1471-2105-4-30

By:

Hubley, Robert M.;
Zitzler, Eckart;
Roach, Jared C.

Publication type:

Article

MatGAT: An application that generates similarity/identity matrices using protein or DNA sequences.

Published in:

2003

By:

Campanella, James J.;
Bitincka, Ledion;
Smalley, John

Publication type:

Product Review

Optimization of neural network architecture using genetic programming improves detection and modeling of gene-gene interactions in studies of human diseases.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 28, doi. 10.1186/1471-2105-4-28

By:

Ritchie, Marylyn D.;
White, Bill C.;
Parker, Joel S.;
Hahn, Lance W.;
Moore, Jason H.

Publication type:

Article

Reproducibility of gene expression across generations of Affymetrix microarrays.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 27, doi. 10.1186/1471-2105-4-27

By:

Nimgaonkar, Ashish;
Sanoudou, Despina;
Butte, Atul J.;
Haslett, Judith N.;
Kunkel, Louis M.;
Beggs, Alan H.;
Kohane, Isaac S.

Publication type:

Article

Statistical implications of pooling RNA samples for microarray experiments.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 26, doi. 10.1186/1471-2105-4-26

By:

Xuejun Peng;
Wood, Constance L.;
Blalock, Eric M.;
Kuey Chu Chen;
Landfield, Philip W.;
Stromberg, Arnold J.

Publication type:

Article

AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 1

By:

Davuluri, Ramana V.;
Hao Sun;
Palaniswamy, Saranyan K.;
Matthews, Nicole;
Molina, Carlos;
Kurtz, Mike;
Grotewold, Erich

Publication type:

Article

A data review and re-assessment of ovarian cancer serum proteomic profiling.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 24, doi. 10.1186/1471-2105-4-24

By:

Sorace, James M.;
Min Zhan

Publication type:

Article

Importing statistical measures into Artemis enhances gene identification in the Leishmania genome project.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 1

By:

Aggarwal, Gautam;
Worthey, E. A.;
McDonagh, Paul D.;
Myler, Peter J.

Publication type:

Article

Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 22, doi. 10.1186/1471-2105-4-22

By:

Bizzaro, Jeff W.;
Marx, Kenneth A.

Publication type:

Article

EasyGene -- a prokaryotic gene finder that ranks ORFs by statistical significance.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 21, doi. 10.1186/1471-2105-4-21

By:

Larsen, Thomas Schou;
Krogh, Anders

Publication type:

Article

Information extraction from full text scientific articles: Where are the keywords?

Published in:

BMC Bioinformatics, 2003, v. 4, p. 1

By:

Shah, Parantu K.;
Perez-Iratxeta, Carolina;
Bork, Peer;
Andrade, Miguel A.

Publication type:

Article

Identification of signature and primers specific to genus Pseudomonas using mismatched patterns of 16S rDNA sequences.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 1

By:

Purohit, H. J.;
Raje, D. V.;
Kapley, A.

Publication type:

Article

Genome wide identification of regulatory motifs in Bacillus subtilis.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 18, doi. 10.1186/1471-2105-4-18

By:

Mwangi, Michael M.;
Siggia, Eric D.

Publication type:

Article

A comparison of Pfam and MEROPS: Two databases, one comprehensive, and one specialised.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 17, doi. 10.1186/1471-2105-4-17

By:

Studholme, David J.;
Rawlings, Neil D.;
Barrett, Alan J.;
Bateman, Alex

Publication type:

Article