Works matching IS 14712105 AND DT 2002 AND VI 3

Results: 40

ORFer -- retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 40

By:

Büssow, Konrad;
Hoffmann, Steve;
Sievert, Volker

Publication type:

Article

Species-specific protein sequence and fold optimizations.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 39, doi. 10.1186/1471-2105-3-39

By:

Dumontier, Michel;
Michalickova, Katerina;
Hogue, Christopher W. V.

Publication type:

Article

Quantifying robustness of biochemical network models.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 38, doi. 10.1186/1471-2105-3-38

By:

Lan Ma;
Iglesias, Pablo A.

Publication type:

Article

Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 37, doi. 10.1186/1471-2105-3-37

By:

Schein, Catherine H.;
Özgün, Numan;
Izumi, Tadahide;
Braun, Werner

Publication type:

Article

Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 36, doi. 10.1186/1471-2105-3-36

By:

Junbai Wang;
Delabie, Jan;
Aasheim, Hans Christian;
Smeland, Erlend;
Myklebost, Ola

Publication type:

Article

FunSpec: a web-based cluster interpreter for yeast.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 35, doi. 10.1186/1471-2105-3-35

By:

Robinson, Mark D.;
Grigull, Jörg;
Mohammad, Naveed;
Hughes, Timothy R.

Publication type:

Article

Automated modelling of signal transduction networks.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 34, doi. 10.1186/1471-2105-3-34

By:

Steffen, Martin;
Petti, Allegra;
Aach, John;
D'haeseleer, Patrik;
Church, George

Publication type:

Article

Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 33, doi. 10.1186/1471-2105-3-33

By:

Borup, Rehannah H. A.;
Toppo, Stefano;
Yi-Wen Chen;
Teslovich, Tanya M.;
Lanfranchi, Gerolamo;
Valle, Giorgio;
Hoffman, Eric P.

Publication type:

Article

SeqHound: biological sequence and structure database as a platform for bioinformatics research.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 32, doi. 10.1186/1471-2105-3-32

By:

Michalickova, Katerina;
Bader, Gary D.;
Dumontier, Michel;
Hao Lieu;
Betel, Doron;
Isserlin, Ruth;
Hogue, Christopher W. V.

Publication type:

Article

Making sense of EST sequences by CLOBBing them.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 31, doi. 10.1186/1471-2105-3-31

By:

Parkinson, John;
Guiliano, David B.;
Blaxter, Mark

Publication type:

Article

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 1

By:

Rajewsky, Nikolaus;
Vergassola, Massimo;
Gaul, Ulrike;
Siggia, Eric D.

Publication type:

Article

Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 29, doi. 10.1186/1471-2105-3-29

By:

Wierling, Christoph K.;
Steinfath, Matthias;
Elge, Thorsten;
Schulze-Kremer, Steffen;
Aanstad, Pia;
Clark, Matthew;
Lehrach, Hans;
Herwig, Ralf

Publication type:

Article

Efficient Boolean implementation of universal sequence maps (bUSM).

Published in:

BMC Bioinformatics, 2002, v. 3, p. 28, doi. 10.1186/1471-2105-3-28

By:

Schwacke, John;
Almeida, Jonas S.

Publication type:

Article

Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 27, doi. 10.1186/1471-2105-3-27

By:

Hao Chen;
Sharp, Burt M.

Publication type:

Article

Expression profiling of human renal carcinomas with functional taxonomic analysis.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 26, doi. 10.1186/1471-2105-3-26

By:

Gieseg, Michael A.;
Cody, Theresa;
Man, Michael Z.;
Madore, Steven J.;
Rubin, Mark A.;
Kaldjian, Eric P.

Publication type:

Article

Prediction of MHC class I binding peptides, using SVMHC.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 25

By:

Dönnes, Pierre;
Elofsson, Arne

Publication type:

Article

The functional importance of disease-associated mutation.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 24, doi. 10.1186/1471-2105-3-24

By:

Mooney, Sean D.;
Klein, Teri E.

Publication type:

Article

Computational method for reducing variance with Affymetrix microarrays.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 23, doi. 10.1186/1471-2105-3-23

By:

Welle, Stephen;
Brooks, Andrew I.;
Thornton, Charles A.

Publication type:

Article

Microarray results: how accurate are they?

Published in:

BMC Bioinformatics, 2002, v. 3, p. 1

By:

Kothapalli, Ravi;
Yoder, Sean J.;
Mane, Shrikant;
Loughran Jr., Thomas P.

Publication type:

Article

The SGS3 protein involved in PTGS finds a family.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 21, doi. 10.1186/1471-2105-3-21

By:

Bateman, Alex

Publication type:

Article

Kangaroo -- A pattern-matching program for biological sequences.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 20, doi. 10.1186/1471-2105-3-20

By:

Betel, Doron;
Hogue, Christopher W. V.

Publication type:

Article

Visualizing the genome: techniques for presenting human genome data and annotations.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 19, doi. 10.1186/1471-2105-3-19

By:

Loraine, Ann E.;
Helt, Gregg A.

Publication type:

Article

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 18, doi. 10.1186/1471-2105-3-18

By:

Eddy, Sean R.

Publication type:

Article

The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 17, doi. 10.1186/1471-2105-3-17

By:

Mutch, David M.;
Berger, Alvin;
Mansourian, Robert;
Rytz, Andreas;
Roberts, Matthew-Alan

Publication type:

Article

Identifying functional relationships among human genes by systematic analysis of biological literature.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 16, doi. 10.1186/1471-2105-3-16

By:

Yong-Chuan Tao;
Leibel, Rudolph L.

Publication type:

Article

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction.

Published in:

2002

By:

Cannone, Jamie J.;
Subramanian, Sankar;
Schnare, Murray N.;
Collett, James R.;
D'Souza, Lisa M.;
Yushi Du;
Feng, Brian;
Nan Lin;
Madabusi, Lakshmi V.;
Müller, Kirsten M.;
Pande, Nupur;
Zhidi Shang;
Nan Yu;
Gutell, Robin R.

Publication type:

Correction Notice

RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 14, doi. 10.1186/1471-2105-3-14

By:

Zmasek, Christian M.;
Eddy, Sean R.

Publication type:

Article

NBLAST: a cluster variant of BLAST for NxN comparisons.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 13, doi. 10.1186/1471-2105-3-13

By:

Dumontier, Michel;
Hogue, Christopher W. V.

Publication type:

Article

CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 12, doi. 10.1186/1471-2105-3-12

By:

Zafar, Nikhat;
Mazumder, Raja;
Seto, Donald

Publication type:

Article

Homology Induction: the use of machine learning to improve sequence similarity searches.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 11, doi. 10.1186/1471-2105-3-11

By:

Karwath, Andreas;
King, Ross D.

Publication type:

Article

RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited -- bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 10, doi. 10.1186/1471-2105-3-10

By:

Bujnicki, Janusz M.;
Rychlewski, Leszek

Publication type:

Article

An algorithm and program for finding sequence specific oligo-nucleotide probes for species identification.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 9, doi. 10.1186/1471-2105-3-9

By:

Pozhitkov, Alexander E.;
Tautz, Diethard

Publication type:

Article

tacg -- a grep for DNA.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 1

By:

Mangalam, Harry J.

Publication type:

Article

Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 7, doi. 10.1186/1471-2105-3-7

By:

Caselle, Michele;
Di Cunto, Ferdinando;
Provero, Paolo

Publication type:

Article

Universal sequence map (USM) of arbitrary discrete sequences.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 6, doi. 10.1186/1471-2105-3-6

By:

Almeida, Jonas S.;
Vinga, Susana

Publication type:

Article

Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 5

By:

Bocs, Stéphanie;
Danchin, Antoine;
Médigue, Claudine

Publication type:

Article

Sources of variability and effect of experimental approach on expression profiling data interpretation.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 4, doi. 10.1186/1471-2105-3-4

By:

Bakay, Marina;
Yi-Wen Chen;
Borup, Rehannah;
Po Zhao;
Nagaraju, Kanneboyina;
Hoffman, Eric P.

Publication type:

Article

Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 3, doi. 10.1186/1471-2105-3-3

By:

Yingyao Zhou;
Abagyan, Ruben

Publication type:

Article

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 2, doi. 10.1186/1471-2105-3-2

By:

Cannone, Jamie J.;
Subramanian, Sankar;
Schnare, Murray N.;
Collett, James R.;
D'Souza, Lisa M.;
Yushi Du;
Feng, Brian;
Nan Lin;
Madabusi, Lakshmi V.;
Müller, Kirsten M.;
Pande, Nupur;
Zhidi Shang;
Nan Yu;
Gutell, Robin R.

Publication type:

Article

Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach.

Published in:

BMC Bioinformatics, 2002, v. 3, p. 1, doi. 10.1186/1471-2105-3-1

By:

Truong, Kevin;
Ikura, Mitsuhiko

Publication type:

Article