Works in BMC Genomics, 2017, Vol 18

Results: 990

Profiling the onset of somatic embryogenesis in Arabidopsis.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4391-1

By:

Magnani, E.;
Jiménez-Gómez, J. M.;
Soubigou-Taconnat, L.;
Lepiniec, L.;
Fiume, E.

Publication type:

Article

Highly accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4390-2

By:

Frischknecht, Mirjam;
Pausch, Hubert;
Bapst, Beat;
Signer-Hasler, Heidi;
Flury, Christine;
Garrick, Dorian;
Stricker, Christian;
Fries, Ruedi;
Gredler-Grandl, Birgit

Publication type:

Article

The emerging picture of the mitochondrial protein import complexes of Amoebozoa supergroup.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4383-1

By:

Wojtkowska, Małgorzata;
Buczek, Dorota;
Yutaka Suzuki;
Shabardina, Victoria;
Makałowski, Wojciech;
Kmita, Hanna

Publication type:

Article

Multiple functions of CREB-binding protein during postembryonic development: identification of target genes.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4373-3

By:

Roy, Amit;
George, Smitha;
Reddy Palli, Subba

Publication type:

Article

Transcriptome analysis reveals key roles of AtLBR-2 in LPS-induced defense responses in plants.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4372-4

By:

Sayaka Iizasa;
Ei'ichi Iizasa;
Keiichi Watanabe;
Yukio Nagano

Publication type:

Article

Cold-responsive miRNAs and their target genes in the wild eggplant species Solanum aculeatissimum.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4341-y

By:

Xu Yang;
Fei Liu;
Yu Zhang;
Lu Wang;
Yu-fu Cheng

Publication type:

Article

Transcriptome analyses of immune tissues from three Japanese frogs (genus Rana) reveals their utility in characterizing major histocompatibility complex class II.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4404-0

By:

Quintin Lau;
Takeshi Igawa;
Ryuhei Minei;
Kosch, Tiffany A.;
Yoko Satta

Publication type:

Article

Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4399-6

By:

Fookes, Maria C.;
Hadfield, James;
Harris, Simon;
Parmar, Surendra;
Unemo, Magnus;
Jensen, Jørgen S.;
Thomson, Nicholas R.

Publication type:

Article

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4387-x

By:

Bottacini, Francesca;
Zomer, Aldert;
Milani, Christian;
Ferrario, Chiara;
Lugli, Gabriele Andrea;
Egan, Muireann;
Ventura, Marco;
van Sinderen, Douwe

Publication type:

Article

Transcriptional effects of a positive feedback circuit in Drosophila melanogaster.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4385-z

By:

Bryk, Jarosław;
Reeves, R. Guy;
Reed, Floyd A.;
Denton, Jai A.

Publication type:

Article

Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4380-4

By:

Deist, Melissa S.;
Gallardo, Rodrigo A.;
Bunn, David A.;
Dekkers, Jack C. M.;
Huaijun Zhou;
Lamont, Susan J.

Publication type:

Article

Polymorphic duplicate genes and persistent non-coding sequences reveal heterogeneous patterns of mitochondrial DNA loss in salamanders.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4358-2

By:

Chong, Rebecca A.;
Mueller, Rachel Lockridge

Publication type:

Article

Time course study of the response to LPS targeting the pig immune gene networks.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4363-5

By:

Terenina, Elena;
Sautron, Valérie;
Ydier, Caroline;
Bazovkina, Darya;
Sevin-Pujol, Amélie;
Gress, Laure;
Lippi, Yannick;
Naylies, Claire;
Billon, Yvon;
Liaubet, Laurence;
Mormede, Pierre;
Villa-Vialaneix, Nathalie

Publication type:

Article

A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4359-1

By:

Jialiang Yang;
Hagen, Jacob;
Guntur, Kalyani V.;
Allette, Kimaada;
Schuyler, Sarah;
Ranjan, Jyoti;
Petralia, Francesca;
Gesta, Stephane;
Sebra, Robert;
Mahajan, Milind;
Zhang, Bin;
Zhu, Jun;
Houten, Sander;
Kasarskis, Andrew;
Vishnudas, Vivek K.;
Akmaev, Viatcheslav R.;
Sarangarajan, Rangaprasad;
Narain, Niven R.;
Schadt, Eric E.;
Argmann, Carmen A.

Publication type:

Article

Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4351-9

By:

Martín-Gálvez, David;
Dunoyer de Segonzac, Denis;
Man Chun John Ma;
Kwitek, Anne E.;
Thybert, David;
Flicek, Paul

Publication type:

Article

Purification of nanogram-range immunoprecipitated DNA in ChIP-seq application.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4371-5

By:

Jian Zhong;
Zhenqing Ye;
Lenz, Samuel W.;
Clark, Chad R.;
Bharucha, Adil;
Farrugia, Gianrico;
Robertson, Keith D.;
Zhiguo Zhang;
Tamas Ordog;
Jeong-Heon Lee

Publication type:

Article

Comparative transcriptome and proteome profiling of two Citrus sinensis cultivars during fruit development and ripening.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4366-2

By:

Jian-hui Wang;
Jian-jun Liu;
Ke-ling Chen;
Hong-wen Li;
Jian He;
Bin Guan;
Li He

Publication type:

Article

Genes uniquely expressed in human growth plate chondrocytes uncover a distinct regulatory network.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4378-y

By:

Bing Li;
Balasubramanian, Karthika;
Krakow, Deborah;
Cohn, Daniel H.

Publication type:

Article

PDE1A polymorphism contributes to the susceptibility of nephrolithiasis.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4247-8

By:

Zhenxing Yang;
Tao Zhou;
Bishao Sun;
Qingqing Wang;
Xingyou Dong;
Xiaoyan Hu;
Jiangfan Zhong;
Bo Song;
Longkun Li

Publication type:

Article

Inferring defense-related gene families in Arabidopsis and wheat.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4381-3

By:

Rong-Cai Yang;
Peng, Fred Y.;
Zhiqiu Hu

Publication type:

Article

Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.).

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4377-z

By:

Jinglei Wang;
Yang Qiu;
Feng Cheng;
Xiaohua Chen;
Xiaohui Zhang;
Haiping Wang;
Jiangping Song;
Mengmeng Duan;
Haohui Yang;
Xixiang Li

Publication type:

Article

Structural, expression and evolutionary analysis of the non-specific phospholipase C gene family in Gossypium hirsutum.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4370-6

By:

Jiuling Song;
Yonghe Zhou;
Juren Zhang;
Kewei Zhang

Publication type:

Article

The coding and noncoding transcriptome of Neurospora crassa.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4360-8

By:

Cemel, Ibrahim Avi;
Ha, Nati;
Schermann, Geza;
Shusuke Yonekawa;
Brunner, Michael

Publication type:

Article

A tissue-based approach to selection of reference genes for quantitative real-time PCR in a sheep osteoporosis model.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4356-4

By:

Schulze, Felix;
Malhan, Deeksha;
El Khassawna, Thaqif;
Heiss, Christian;
Seckinger, Anja;
Hose, Dirk;
Rösen-Wolff, Angela

Publication type:

Article

Comparative transcriptome analysis of Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) reveals novel insights into heat stress tolerance in insects.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4355-5

By:

Yuncai Liu;
Hang Su;
Rongqiao Li;
Xiaotong Li;
Yusong Xu;
Xiangping Dai;
Yanyan Zhou;
Huabing Wang

Publication type:

Article

Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4318-x

By:

Serres-Armero, Aitor;
Povolotskaya, Inna S.;
Quilez, Javier;
Ramirez, Oscar;
Santpere, Gabriel;
Kuderna, Lukas F. K.;
Hernandez-Rodriguez, Jessica;
Fernandez-Callejo, Marcos;
Gomez-Sanchez, Daniel;
Freedman, Adam H.;
Fan, Zhenxin;
Novembre, John;
Navarro, Arcadi;
Boyko, Adam;
Wayne, Robert;
Vilà, Carles;
Lorente-Galdos, Belen;
Marques-Bonet, Tomas

Publication type:

Article

Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4317-y

By:

Zhao, K.;
Chen, Y. H.;
Penner, G. B.;
Oba, M.;
Guan, L. L.

Publication type:

Article

Estrogen exposure overrides the masculinizing effect of elevated temperature by a downregulation of the key genes implicated in sexual differentiation in a fish with mixed genetic and environmental sex determination.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4345-7

By:

Díaz, Noelia;
Piferrer, Francesc

Publication type:

Article

Training the salmon's genes: influence of aerobic exercise, swimming performance and selection on gene expression in Atlantic salmon.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4361-7

By:

Robinson, Nicholas A.;
Timmerhaus, Gerrit;
Baranski, Matthew;
Andersen, Øivind;
Takle, Harald;
Krasnov, Aleksei

Publication type:

Article

Identification of Sertoli cell-specific transcripts in the mouse testis and the role of FSH and androgen in the control of Sertoli cell activity.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4357-3

By:

Soffientini, U.;
Rebourcet, D.;
Abel, M. H.;
Lee, S.;
Hamilton, G.;
Fowler, P. A.;
Smith, L. B.;
O'Shaughnessy, P. J.

Publication type:

Article

Bioinformatically predicted deleterious mutations reveal complementation in the interior spruce hybrid complex.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4344-8

By:

Conte, Gina L.;
Hodgins, Kathryn A.;
Yeaman, Sam;
Degner, Jon C.;
Aitken, Sally N.;
Rieseberg, Loren H.;
Whitlock, Michael C.

Publication type:

Article

Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4321-2

By:

Ullah, Naimat;
Yüce, Meral;
Gökçe, Z. Neslihan Öztürk;
Budak, Hikmet

Publication type:

Article

DNA and RNA-sequence based GWAS highlights membrane-transport genes as key modulators of milk lactose content.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4320-3

By:

Lopdell, Thomas J.;
Tiplady, Kathryn;
Struchalin, Maksim;
Johnson, Thomas J. J.;
Keehan, Michael;
Sherlock, Ric;
Couldrey, Christine;
Davis, Stephen R.;
Snell, Russell G.;
Spelman, Richard J.;
Littlejohn, Mathew D.

Publication type:

Article

Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4354-6

By:

Maroilley, T.;
Lemonnier, G.;
Lecardonnel, J.;
Esquerré, D.;
Ramayo-Caldas, Y.;
Mercat, M. J.;
Rogel-Gaillard, C.;
Estellé, J.

Publication type:

Article

Isogenic mice exhibit sexually-dimorphic DNA methylation patterns across multiple tissues.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4350-x

By:

McCormick, Helen;
Young, Paul E.;
Hur, Suzy S. J.;
Booher, Keith;
Chung, Hunter;
Cropley, Jennifer E.;
Giannoulatou, Eleni;
Suter, Catherine M.

Publication type:

Article

Pronounced strain-specific chemosensory receptor gene expression in the mouse vomeronasal organ.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4364-4

By:

Duyck, Kyle;
DuTell, Vasha;
Limei Ma;
Paulson, Ariel;
Ron Yu, C.

Publication type:

Article

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4353-7

By:

Sharifi-Zarchi, Ali;
Gerovska, Daniela;
Adachi, Kenjiro;
Totonchi, Mehdi;
Pezeshk, Hamid;
Taft, Ryan J.;
Schöler, Hans R.;
Chitsaz, Hamidreza;
Sadeghi, Mehdi;
Baharvand, Hossein;
Araúzo-Bravo, Marcos J.

Publication type:

Article

Comparative ribosome profiling uncovers a dominant role for translational control in Toxoplasma gondii.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4362-6

By:

Hassan, Musa A.;
Vasquez, Juan J.;
Chew Guo-Liang;
Meissner, Markus;
Siegel, T. Nicolai

Publication type:

Article

Global gene expression in two potato cultivars in response to 'Candidatus Liberibacter solanacearum' infection.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4313-2

By:

Levy, Julien G.;
Mendoza, Azucena;
Miller Jr., J. Creighton;
Tamborindeguy, Cecilia;
Pierson, Elizabeth A.

Publication type:

Article

Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4319-9

By:

Chao-Nan Fu;
Hong-Tao Li;
Milne, Richard;
Ting Zhang;
Peng-Fei Ma;
Jing Yang;
De-Zhu Li;
Lian-Ming Gao

Publication type:

Article

Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4322-1

By:

Pham, Nguyen-Phuong;
Layec, Séverine;
Dugat-Bony, Eric;
Vidal, Marie;
Irlinger, Françoise;
Monnet, Christophe

Publication type:

Article

Correction to: Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by nextgeneration sequencing technology.

Published in:: 2017
Publication type:: Correction Notice

Genomic signature of highland adaptation in fish: a case study in Tibetan Schizothoracinae species.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4352-8

By:

Chao Tong;
Fei Tian;
Kai Zhao

Publication type:

Article

From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4343-9

By:

Weina Guo;
Jelocnik, Martina;
Jing Li;
Sachse, Konrad;
Polkinghorne, Adam;
Pannekoek, Yvonne;
Kaltenboeck, Bernhard;
Jiansen Gong;
Jinfeng You;
Chengming Wang

Publication type:

Article

Transcriptomics analysis of the flowering regulatory genes involved in the herbicide resistance of Asia minor bluegrass (Polypogon fugax).

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4324-z

By:

Fengyan Zhou;
Yong Zhang;
Wei Tang;
Mei Wang;
Tongchun Gao

Publication type:

Article

Comparative analysis of avian poxvirus genomes, including a novel poxvirus from lesser flamingos (Phoenicopterus minor), highlights the lack of conservation of the central region.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4315-0

By:

Carulei, Olivia;
Douglass, Nicola;
Williamson, Anna-Lise

Publication type:

Article

Inference of genetic relatedness between viral quasispecies from sequencing data.

Published in:

BMC Genomics, 2017, v. 18, p. 81, doi. 10.1186/s12864-017-4274-5

By:

Glebova, Olga;
Knyazev, Sergey;
Melnyk, Andrew;
Artyomenko, Alexander;
Khudyakov, Yury;
Zelikovsky, Alex;
Skums, Pavel

Publication type:

Article

Higher recall in metagenomic sequence classification exploiting overlapping reads.

Published in:

BMC Genomics, 2017, v. 18, p. 69, doi. 10.1186/s12864-017-4273-6

By:

Girotto, Samuele;
Comin, Matteo;
Pizzi, Cinzia

Publication type:

Article

Prediction of missing common genes for disease pairs using network based module separation on incomplete human interactome.

Published in:

BMC Genomics, 2017, v. 18, p. 61, doi. 10.1186/s12864-017-4272-7

By:

Akram, Pakeeza;
Li Liao

Publication type:

Article

Single molecule sequencing-guided scaffolding and correction of draft assemblies.

Published in:

BMC Genomics, 2017, v. 18, p. 51, doi. 10.1186/s12864-017-4271-8

By:

Shenglong Zhu;
Chen, Danny Z.;
Emrich, Scott J.

Publication type:

Article