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Selecting effective siRNA sequences by using radial basis functionnetwork and decision tree learning.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. S22, doi. 10.1186/1471-2105-7-S5-S22
- Publication type:
- Article
MicroTar: predicting microRNA targets from RNA duplexes.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. S20, doi. 10.1186/1471-2105-7-S5-S20
- Publication type:
- Article
Comparative genomics in cyprinids: common carp ESTs help theannotation of the zebrafish genome.
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- BMC Bioinformatics, 2006, v. 7, p. S2, doi. 10.1186/1471-2105-7-S5-S2
- Publication type:
- Article
Recursive gene selection based on maximum margin criterion: acomparison with SVM-RFE.
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- BMC Bioinformatics, 2006, v. 7, p. 543
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- Article
HaploRec: efficient and accurate large-scale reconstruction ofhaplotypes.
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- BMC Bioinformatics, 2006, v. 7, p. 542
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- Article
How repetitive are genomes?
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- BMC Bioinformatics, 2006, v. 7, p. 541
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- Article
A method for estimation of elasticities in metabolic networks usingsteady state and dynamic metabolomics data and linlog kinetics.
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- BMC Bioinformatics, 2006, v. 7, p. 540
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- Article
A minimally invasive multiple marker approach allows highlyefficient detection of meningioma tumors.
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- BMC Bioinformatics, 2006, v. 7, p. 539
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- Article
Intensity-based hierarchical Bayes method improves testing fordifferentially expressed genes in microarray experiments.
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- BMC Bioinformatics, 2006, v. 7, p. 538
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- Article
Improvement in accuracy of multiple sequence alignment usingnovel group-to-group sequence alignment algorithm with piecewiselinear gap cost.
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- BMC Bioinformatics, 2006, v. 7, p. 524
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- Article
Fast estimation of the difference between two PAM/JTTevolutionary distances in triplets of homologous sequences.
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- BMC Bioinformatics, 2006, v. 7, p. 529
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- Article
A specialized learner for inferring structured cis-regulatorymodules.
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- BMC Bioinformatics, 2006, v. 7, p. 528
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- Article
Logarithmic gap costs decrease alignment accuracy.
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- BMC Bioinformatics, 2006, v. 7, p. 527
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- Article
Chromosomal patterns of gene expression from microarray data:methodology, validation and clinical relevance in gliomas.
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- BMC Bioinformatics, 2006, v. 7, p. 526
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- Article
Empirical study of supervised gene screening.
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- BMC Bioinformatics, 2006, v. 7, p. 537
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- Article
Integrated siRNA design based on surveying of features associatedwith high RNAi effectiveness.
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- BMC Bioinformatics, 2006, v. 7, p. 516
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- Article
Dynamic variable selection in SNP genotype autocalling fromAPEX microarray data.
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- BMC Bioinformatics, 2006, v. 7, p. 521
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- Article
A hierarchical Naïve Bayes Model for handling sampleheterogeneity in classification problems: an application to tissuemicroarrays.
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- BMC Bioinformatics, 2006, v. 7, p. 514
- Publication type:
- Article
Inferring topology from clustering coefficients in protein-proteininteraction networks.
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- BMC Bioinformatics, 2006, v. 7, p. 519
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- Article
Statistical analysis of an RNA titration series evaluates microarrayprecision and sensitivity on a whole-array basis.
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- BMC Bioinformatics, 2006, v. 7, p. 511
- Publication type:
- Article
Cis-motifs upstream of the transcription and translation initiationsites are effectively revealed by their positional disequilibrium ineukaryote genomes using frequency distribution curves.
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- BMC Bioinformatics, 2006, v. 7, p. 522
- Publication type:
- Article
SigFlux: A novel network feature to evaluate the importance ofproteins in signal transduction networks.
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- BMC Bioinformatics, 2006, v. 7, p. 515
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- Article
An accurate and interpretable model for siRNA efficacy prediction.
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- BMC Bioinformatics, 2006, v. 7, p. 520
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- Article
Systematic assignment of thermodynamic constraints in metabolicnetwork models.
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- BMC Bioinformatics, 2006, v. 7, p. 512
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- Article
Prediction of protein submitochondria locations by hybridizingpseudo-amino acid composition with various physicochemicalfeatures of segmented sequence.
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- BMC Bioinformatics, 2006, v. 7, p. 518
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- Article
Connectivity independent protein-structure alignment: ahierarchical approach.
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- BMC Bioinformatics, 2006, v. 7, p. 510
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- Article
CoXpress: differential co-expression in gene expression data.
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- BMC Bioinformatics, 2006, v. 7, p. 509
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- Article
IntNetDB v1.0: an integrated protein-protein interaction networkdatabase generated by a probabilistic model.
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- BMC Bioinformatics, 2006, v. 7, p. 508
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- Article
Novel methods for secondary structure determination using lowwavelength (VUV) circular dichroism spectroscopic data.
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- BMC Bioinformatics, 2006, v. 7, p. 507
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- Article
Using local gene expression similarities to discover regulatorybinding site modules.
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- BMC Bioinformatics, 2006, v. 7, p. 505
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- Article
A comparative analysis of the information content in long and shortSAGE libraries.
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- BMC Bioinformatics, 2006, v. 7, p. 504
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- Article
A correlated motif approach for finding short linear motifs fromprotein interaction networks.
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- BMC Bioinformatics, 2006, v. 7, p. 502
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- Article
Predicting Class II MHC-Peptide binding: a kernel based approachusing similarity scores.
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- BMC Bioinformatics, 2006, v. 7, p. 501
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- Article
PathogenMIPer: a tool for the design of molecular inversion probesto detect multiple pathogens.
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- BMC Bioinformatics, 2006, v. 7, p. 500
- Publication type:
- Article
Time scale and dimension analysis of a budding yeast cell cyclemodel.
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- BMC Bioinformatics, 2006, v. 7, p. 494
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- Article
A method for rapid similarity analysis of RNA secondary structures.
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- BMC Bioinformatics, 2006, v. 7, p. 493
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- Article
Automated recognition of malignancy mentions in biomedicalliterature.
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- BMC Bioinformatics, 2006, v. 7, p. 492
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- Article
Assessing protein similarity with Gene Ontology and its use insubnuclear localization prediction.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 491
- Publication type:
- Article
Evaluation of clustering algorithms for protein-protein interactionnetworks.
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- BMC Bioinformatics, 2006, v. 7, p. 488
- Publication type:
- Article
GibbsST: a Gibbs sampling method for motif discovery withenhanced resistance to local optima.
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- BMC Bioinformatics, 2006, v. 7, p. 486
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- Article
Machine learning techniques in disease forecasting: a case study onrice blast prediction.
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- BMC Bioinformatics, 2006, v. 7, p. 485
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- Article
A statistical score for assessing the quality of multiple sequencealignments.
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- BMC Bioinformatics, 2006, v. 7, p. 484
- Publication type:
- Article
Novel metaheuristic for parameter estimation in nonlineardynamic biological systems.
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- BMC Bioinformatics, 2006, v. 7, p. 483
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- Article
Application of Petri net based analysis techniques to signaltransduction pathways.
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- BMC Bioinformatics, 2006, v. 7, p. 482
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- Article
Mining expressed sequence tags identifies cancer markers of clinicalinterest.
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- BMC Bioinformatics, 2006, v. 7, p. 481
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- Article
HybGFS: a hybrid method for genome-fingerprint scanning.
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- BMC Bioinformatics, 2006, v. 7, p. 479
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- Article
Topological basis of signal integration in thetranscriptional-regulatory network of the yeast, Saccharomycescerevisiae.
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- BMC Bioinformatics, 2006, v. 7, p. 478
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- Article
Browsing repeats in genomes: Pygram and an application tonon-coding region analysis.
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- BMC Bioinformatics, 2006, v. 7, p. 477
- Publication type:
- Article
Using the nucleotide substitution rate matrix to detect horizontalgene transfer.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 476
- Publication type:
- Article
Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPAinduced dyskinesia in an animal model of Parkinson's disease usingDIGE.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 475
- Publication type:
- Article