Works matching IS 1471-2105 AND VI 26 AND IP 1 AND DT 2025
Results: 91
optRF: Optimising random forest stability by determining the optimal number of trees.
- Published in:
- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06097-1
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- Article
DconnLoop: a deep learning model for predicting chromatin loops based on multi-source data integration.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06092-6
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- Article
optRF: Optimising random forest stability by determining the optimal number of trees.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06097-1
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- Article
Amogel: a multi-omics classification framework using associative graph neural networks with prior knowledge for biomarker identification: AMOGEL: a multi-omics classification...: C. Y. Tan et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06111-6
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- Article
DMoVGPE: predicting gut microbial associated metabolites profiles with deep mixture of variational Gaussian Process experts.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06110-7
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- Article
SCITUNA: single-cell data integration tool using network alignment.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06087-3
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- Article
SequenceCraft: machine learning-based resource for exploratory analysis of RNA-cleaving deoxyribozymes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06019-7
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- Article
Methylmap: visualization of modified nucleotides for large cohort sizes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06106-3
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ChIPbinner: an R package for analyzing broad histone marks binned in uniform windows from ChIP-Seq or CUT&RUN/TAG data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06103-6
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- Article
Uncovering latent biological function associations through gene set embeddings.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06100-9
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- Article
Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06105-4
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- Article
Deep-ProBind: binding protein prediction with transformer-based deep learning model.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06101-8
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- Article
Prediction of drug's anatomical therapeutic chemical (ATC) code by constructing biological profiles of ATC codes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06102-7
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- Article
Validating a web application's use of genetic distance to determine helminth species boundaries and aid in identification.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06098-0
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- Article
Transfer learning for accelerated failure time model with microarray data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06056-w
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- Article
FPGA-based accelerator for adaptive banded event alignment in nanopore sequencing data analysis.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06011-1
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- Article
A clinical knowledge graph-based framework to prioritize candidate genes for facilitating diagnosis of Mendelian diseases and rare genetic conditions.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06096-2
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- Article
SNPeBoT: a tool for predicting transcription factor allele specific binding.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06094-4
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- Article
Constructing multilayer PPI networks based on homologous proteins and integrating multiple PageRank to identify essential proteins.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06093-5
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- Article
GoldPolish-target: targeted long-read genome assembly polishing.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06091-7
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UTAP2: an enhanced user-friendly transcriptome and epigenome analysis pipeline.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06090-8
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- Article
An alignment-free method for phylogeny estimation using maximum likelihood: An alignment-free method for phylogeny estimation...: T. Zahin et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06080-w
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- Article
TRain: T-cell receptor automated immunoinformatics.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06074-8
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- Article
Robust phylogenetic tree-based microbiome association test using repeatedly measured data for composition bias.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06002-2
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- Article
Cross-validation for training and testing co-occurrence network inference algorithms: Cross-validation for training and testing co-occurrence network...: D. Agyapong et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06083-7
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- Article
A distribution-guided Mapper algorithm.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06085-5
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- Article
Dual-approach co-expression analysis framework (D-CAF) enables identification of novel circadian co-regulation from multi-omic timeseries data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06089-1
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ProToDeviseR: an automated protein topology scheme generator.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06088-2
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- Article
PyPropel: a Python-based tool for efficiently processing and characterising protein data.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06079-3
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- Article
Comparative Assessment of Protein Large Language Models for Enzyme Commission Number Prediction.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06081-9
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- Article
Analyzing microbiome data with taxonomic misclassification using a zero-inflated Dirichlet-multinomial model: Microbiome misclassification: M. D. Koslovsky.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06078-4
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Combining single-cell ATAC and RNA sequencing for supervised cell annotation: Multi-omic supervised annotation: J. Gill et al.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06084-6
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- Article
goloco: a web application to create genome scale information from surprisingly small experiments.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06070-y
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- Article
scFTAT: a novel cell annotation method integrating FFT and transformer.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06061-z
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- Article
Estimation of mosaic loss of Y chromosome cell fraction with genotyping arrays lacking coverage in the pseudoautosomal region.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06076-6
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- Article
BHCox: Bayesian heredity-constrained Cox proportional hazards models for detecting gene-environment interactions.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06077-5
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- Article
MFCADTI: improving drug-target interaction prediction by integrating multiple feature through cross attention mechanism.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06075-7
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- Article
A Dirichlet-multinomial mixed model for determining differential abundance of mutational signatures.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06055-x
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- Article
Harnessing pre-trained models for accurate prediction of protein-ligand binding affinity.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06064-w
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- Article
A novel weighted pseudo-labeling framework based on matrix factorization for adverse drug reaction prediction.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06053-z
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- Article
Identifying risk factors for Alzheimer's disease from multivariate longitudinal clinical data using temporal pattern mining.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-024-06018-8
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- Article
CamITree: a streamlined software for phylogenetic analysis of viral and mitochondrial genomes.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06034-2
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Using individual barcodes to increase quantification power of massively parallel reporter assays.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06065-9
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- Article
CoMIT: a bioinformatic pipeline for risk-based prediction of COVID-19 test inclusivity.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06046-y
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HarmonizR: blocking and singular feature data adjustment improve runtime efficiency and data preservation.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06073-9
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HGATLink: single-cell gene regulatory network inference via the fusion of heterogeneous graph attention networks and transformer.
- Published in:
- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06071-x
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- Article
Mammalian piRNA target prediction using a hierarchical attention model.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06068-6
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A hybrid machine learning framework for functional annotation of mitochondrial glutathione transport and metabolism proteins in cancers.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06051-1
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- Article
SEGT-GO: a graph transformer method based on PPI serialization and explanatory artificial intelligence for protein function prediction.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06059-7
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- Publication type:
- Article
Conditional similarity triplets enable covariate-informed representations of single-cell data.
- Published in:
- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06069-5
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- Article