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Deep learning with language models improves named entity recognition for PharmaCoNER.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04260-y
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Analyzing transfer learning impact in biomedical cross-lingual named entity recognition and normalization.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04247-9
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Improving deep learning method for biomedical named entity recognition by using entity definition information.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04236-y
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Combining word embeddings to extract chemical and drug entities in biomedical literature.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04188-3
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Concept recognition as a machine translation problem.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04141-4
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Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors.
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- 2021
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- Correction Notice
cDNA-detector: detection and removal of cDNA contamination in DNA sequencing libraries.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04529-2
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GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04461-5
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Selected abstracts of Bioinformatics: from Algorithms to Applications 2021 Conference.
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- BMC Bioinformatics, 2021, v. 22, n. 16, p. 1, doi. 10.1186/s12859-021-04475-z
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- Article
LDexpress: an online tool for integrating population-specific linkage disequilibrium patterns with tissue-specific expression data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04531-8
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- Article
pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04519-4
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- Article
Class similarity network for coding and long non-coding RNA classification.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04517-6
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FCLQC: fast and concurrent lossless quality scores compressor.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04516-7
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- Article
COSNeti: ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04510-z
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- Article
Prioritising positively selected variants in whole-genome sequencing data using FineMAV.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04506-9
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- Article
GraphOmics: an interactive platform to explore and integrate multi-omics data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04500-1
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- Article
Gene prediction of aging-related diseases based on DNN and Mashup.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04518-5
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- Article
GENPPI: standalone software for creating protein interaction networks from genomes.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04501-0
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- Article
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE).
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04514-9
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- Article
Primal-dual for classification with rejection (PD-CR): a novel method for classification and feature selection—an application in metabolomics studies.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04478-w
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- Article
Computational modelling of chromosomally clustering protein domains in bacteria.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04512-x
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gcMECM: graph clustering of mutual exclusivity of cancer mutations.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04505-w
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- Article
JLAN: medical code prediction via joint learning attention networks and denoising mechanism.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04520-x
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- Article
AttCRISPR: a spacetime interpretable model for prediction of sgRNA on-target activity.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04509-6
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- Article
Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04503-y
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- Article
MCKAT: a multi-dimensional copy number variant kernel association test.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04494-w
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- Article
Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04483-z
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- Article
Correction to: Mining a stroke knowledge graph from literature.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04502-z
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- Article
Optimal dimensionality selection for independent component analysis of transcriptomic data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04497-7
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- Article
Comparative analysis of aneurysm subtypes associated genes based on protein–protein interaction network.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04513-w
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- Article
Correction to: ncDLRES: a novel method for non‑coding RNAs family prediction based on dynamic LSTM and ResNet.
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- 2021
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- Correction Notice
An efficient scRNA-seq dropout imputation method using graph attention network.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04493-x
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- Article
SpinSPJ: a novel NMR scripting system to implement artificial intelligence and advanced applications.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04492-y
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- Article
ncDLRES: a novel method for non-coding RNAs family prediction based on dynamic LSTM and ResNet.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04365-4
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- Article
QuickPIV: Efficient 3D particle image velocimetry software applied to quantifying cellular migration during embryogenesis.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04474-0
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- Article
BreakNet: detecting deletions using long reads and a deep learning approach.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04499-5
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- Article
Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04498-6
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- Article
Predicting environmentally responsive transgenerational differential DNA methylated regions (epimutations) in the genome using a hybrid deep-machine learning approach.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04491-z
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- Article
Nested Stochastic Block Models applied to the analysis of single cell data.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04489-7
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- Article
Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04488-8
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- Article
Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04488-8
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- Article
Bipartite graph-based collaborative matrix factorization method for predicting miRNA-disease associations.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04486-w
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- Article
A multitask transfer learning framework for the prediction of virus-human protein–protein interactions.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04484-y
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- Article
Predictive modeling of gene expression regulation.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04481-1
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- Article
EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04480-2
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- Publication type:
- Article
Efficient iterative Hi-C scaffolder based on N-best neighbors.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04453-5
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- Publication type:
- Article
LPI-HyADBS: a hybrid framework for lncRNA-protein interaction prediction integrating feature selection and classification.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04485-x
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- Article
TSEBRA: transcript selector for BRAKER.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04482-0
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- Article
NeuRank: learning to rank with neural networks for drug–target interaction prediction.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04476-y
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- Article
TSEBRA: transcript selector for BRAKER.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04482-0
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- Publication type:
- Article