Works matching IS 14675463 AND DT 2021 AND VI 22 AND IP 6

Results: 209

Detection algorithms and attentive points of safety signal using spontaneous reporting systems as a clinical data source.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab347

By:

Noguchi, Yoshihiro;
Tachi, Tomoya;
Teramachi, Hitomi

Publication type:

Article

Molecular design in drug discovery: a comprehensive review of deep generative models.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab344

By:

Cheng, Yu;
Gong, Yongshun;
Liu, Yuansheng;
Song, Bosheng;
Zou, Quan

Publication type:

Article

Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab342

By:

Wang, Zhengfeng;
Lei, Xiujuan

Publication type:

Article

Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab341

By:

Si, Yunda;
Yan, Chengfei

Publication type:

Article

Recent omics-based computational methods for COVID-19 drug discovery and repurposing.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab339

By:

Tayara, Hilal;
Abdelbaky, Ibrahim;
Chong, Kil To

Publication type:

Article

integrated computational pipeline for designing high-affinity nanobodies with expanded genetic codes.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab338

By:

Padhi, Aditya K;
Kumar, Ashutosh;
Haruna, Ken-ichi;
Sato, Haruna;
Tamura, Hiroko;
Nagatoishi, Satoru;
Tsumoto, Kouhei;
Yamaguchi, Atushi;
Iraha, Fumie;
Takahashi, Mihoko;
Sakamoto, Kensaku;
Zhang, Kam Y J

Publication type:

Article

Comparison of approaches to transcriptomic analysis in multi-sampled tumors.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab337

By:

Ku, Anson T;
Wilkinson, Scott;
Sowalsky, Adam G

Publication type:

Article

DNAgenie: accurate prediction of DNA-type-specific binding residues in protein sequences.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab336

By:

Zhang, Jian;
Ghadermarzi, Sina;
Katuwawala, Akila;
Kurgan, Lukasz

Publication type:

Article

DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab335

By:

Xu, Zhaochun;
Luo, Meng;
Lin, Weizhong;
Xue, Guangfu;
Wang, Pingping;
Jin, Xiyun;
Xu, Chang;
Zhou, Wenyang;
Cai, Yideng;
Yang, Wenyi;
Nie, Huan;
Jiang, Qinghua

Publication type:

Article

De novo generation of dual-target ligands using adversarial training and reinforcement learning.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab333

By:

Lu, Fengqing;
Li, Mufei;
Min, Xiaoping;
Li, Chunyan;
Zeng, Xiangxiang

Publication type:

Article

Matrix factorization-based data fusion for the prediction of RNA-binding proteins and alternative splicing event associations during epithelial–mesenchymal transition.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab332

By:

Qiu, Yushan;
Ching, Wai-Ki;
Zou, Quan

Publication type:

Article

High-dimensional generalized propensity score with application to omics data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab331

By:

Gao, Qian;
Zhang, Yu;
Liang, Jie;
Sun, Hongwei;
Wang, Tong

Publication type:

Article

Functional meta-omics provide critical insights into long- and short-read assemblies.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab330

By:

Galata, Valentina;
Busi, Susheel Bhanu;
Kunath, Benoît Josef;
Nies, Laura de;
Calusinska, Magdalena;
Halder, Rashi;
May, Patrick;
Wilmes, Paul;
Laczny, Cédric Christian

Publication type:

Article

approach to gene-based testing accounting for dependence of tests among nearby genes.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab329

By:

Yurko, Ronald;
Roeder, Kathryn;
Devlin, Bernie;
G'Sell, Max

Publication type:

Article

Predicting potential small molecule–miRNA associations based on bounded nuclear norm regularization.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab328

By:

Chen, Xing;
Zhou, Chi;
Wang, Chun-Chun;
Zhao, Yan

Publication type:

Article

Learning to SMILES: BAN-based strategies to improve latent representation learning from molecules.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab327

By:

Wu, Cheng-Kun;
Zhang, Xiao-Chen;
Yang, Zhi-Jiang;
Lu, Ai-Ping;
Hou, Ting-Jun;
Cao, Dong-Sheng

Publication type:

Article

RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab326

By:

Shi, Shuo;
Qian, Qiheng;
Yu, Shuhuan;
Wang, Qi;
Wang, Jinyue;
Zeng, Jingyao;
Du, Zhenglin;
Xiao, Jingfa

Publication type:

Article

DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab325

By:

Chen, Jiaxing;
Cheong, ChinWang;
Lan, Liang;
Zhou, Xin;
Liu, Jiming;
Lyu, Aiping;
Cheung, William K;
Zhang, Lu

Publication type:

Article

Reviewing and assessing existing meta-analysis models and tools.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab324

By:

Makinde, Funmilayo L;
Tchamga, Milaine S S;
Jafali, James;
Fatumo, Segun;
Chimusa, Emile R;
Mulder, Nicola;
Mazandu, Gaston K

Publication type:

Article

Detecting methylation quantitative trait loci using a methylation random field method.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab323

By:

Lyu, Chen;
Huang, Manyan;
Liu, Nianjun;
Chen, Zhongxue;
Lupo, Philip J;
Tycko, Benjamin;
Witte, John S;
Hobbs, Charlotte A;
Li, Ming

Publication type:

Article

Mendelian randomization under the omnigenic architecture.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab322

By:

Wang, Lu;
Gao, Boran;
Fan, Yue;
Xue, Fuzhong;
Zhou, Xiang

Publication type:

Article

Application of artificial intelligence and machine learning for COVID-19 drug discovery and vaccine design.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab320

By:

Lv, Hao;
Shi, Lei;
Berkenpas, Joshua William;
Dao, Fu-Ying;
Zulfiqar, Hasan;
Ding, Hui;
Zhang, Yang;
Yang, Liming;
Cao, Renzhi

Publication type:

Article

Drug repositioning based on the heterogeneous information fusion graph convolutional network.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab319

By:

Cai, Lijun;
Lu, Changcheng;
Xu, Junlin;
Meng, Yajie;
Wang, Peng;
Fu, Xiangzheng;
Zeng, Xiangxiang;
Su, Yansen

Publication type:

Article

FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab318

By:

Bernard, Maria;
Rué, Olivier;
Mariadassou, Mahendra;
Pascal, Géraldine

Publication type:

Article

Mol2Context-vec: learning molecular representation from context awareness for drug discovery.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab317

By:

Lv, Qiujie;
Chen, Guanxing;
Zhao, Lu;
Zhong, Weihe;
Chen, Calvin Yu-Chian

Publication type:

Article

Single-cell Hi-C data analysis: safety in numbers.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab316

By:

Galitsyna, Aleksandra A;
Gelfand, Mikhail S

Publication type:

Article

XOmiVAE: an interpretable deep learning model for cancer classification using high-dimensional omics data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab315

By:

Withnell, Eloise;
Zhang, Xiaoyu;
Sun, Kai;
Guo, Yike

Publication type:

Article

systematic comparison of data- and knowledge-driven approaches to disease subtype discovery.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab314

By:

Rintala, Teemu J;
Federico, Antonio;
Latonen, Leena;
Greco, Dario;
Fortino, Vittorio

Publication type:

Article

genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab313

By:

VanOeffelen, Margo;
Nguyen, Marcus;
Aytan-Aktug, Derya;
Brettin, Thomas;
Dietrich, Emily M;
Kenyon, Ronald W;
Machi, Dustin;
Mao, Chunhong;
Olson, Robert;
Pusch, Gordon D;
Shukla, Maulik;
Stevens, Rick;
Vonstein, Veronika;
Warren, Andrew S;
Wattam, Alice R;
Yoo, Hyunseung;
Davis, James J

Publication type:

Article

gentle introduction to understanding preclinical data for cancer pharmaco-omic modeling.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab312

By:

Piyawajanusorn, Chayanit;
Nguyen, Linh C;
Ghislat, Ghita;
Ballester, Pedro J

Publication type:

Article

Cell fate conversion prediction by group sparse optimization method utilizing single-cell and bulk OMICs data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab311

By:

Qin, Jing;
Hu, Yaohua;
Yao, Jen-Chih;
Leung, Ricky Wai Tak;
Zhou, Yongqiang;
Qin, Yiming;
Wang, Junwen

Publication type:

Article

NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab310

By:

Jiang, Mingming;
Zhao, Bowen;
Luo, Shenggan;
Wang, Qiankun;
Chu, Yanyi;
Chen, Tianhang;
Mao, Xueying;
Liu, Yatong;
Wang, Yanjing;
Jiang, Xue;
Wei, Dong-Qing;
Xiong, Yi

Publication type:

Article

APPTEST is a novel protocol for the automatic prediction of peptide tertiary structures.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab308

By:

Timmons, Patrick Brendan;
Hewage, Chandralal M

Publication type:

Article

Data-driven identification of SARS-CoV-2 subpopulations using PhenoGraph and binary-coded genomic data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab307

By:

Yang, Zhi-Kai;
Pan, Lingyu;
Zhang, Yanming;
Luo, Hao;
Gao, Feng

Publication type:

Article

Genome-wide hierarchical mixed model association analysis.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab306

By:

Hao, Zhiyu;
Gao, Jin;
Song, Yuxin;
Yang, Runqing;
Liu, Di

Publication type:

Article

Identifying complex gene–gene interactions: a mixed kernel omnibus testing approach.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab305

By:

Liu, Yan;
Gao, Yuzhao;
Fang, Ruiling;
Cao, Hongyan;
Sa, Jian;
Wang, Jianrong;
Liu, Hongqi;
Wang, Tong;
Cui, Yuehua

Publication type:

Article

Supervised application of internal validation measures to benchmark dimensionality reduction methods in scRNA-seq data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab304

By:

Koch, Forrest C;
Sutton, Gavin J;
Voineagu, Irina;
Vafaee, Fatemeh

Publication type:

Article

comparative benchmark of classic DNA motif discovery tools on synthetic data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab303

By:

Castellana, Stefano;
Biagini, Tommaso;
Parca, Luca;
Petrizzelli, Francesco;
Bianco, Salvatore Daniele;
Vescovi, Angelo Luigi;
Carella, Massimo;
Mazza, Tommaso

Publication type:

Article

Identification of miRNA–disease associations via multiple information integration with Bayesian ranking.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab302

By:

Zhu, Chi-Chi;
Wang, Chun-Chun;
Zhao, Yan;
Zuo, Mingcheng;
Chen, Xing

Publication type:

Article

novel framework integrating AI model and enzymological experiments promotes identification of SARS-CoV-2 3CL protease inhibitors and activity-based probe.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab301

By:

Hu, Fan;
Wang, Lei;
Hu, Yishen;
Wang, Dongqi;
Wang, Weijie;
Jiang, Jianbing;
Li, Nan;
Yin, Peng

Publication type:

Article

Local ancestry inference in heterogeneous populations—Are recent recombination events more relevant?

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab300

By:

Eeden, Gerald van;
Uren, Caitlin;
van der Spuy, Gian;
Tromp, Gerard;
Möller, Marlo

Publication type:

Article

end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab299

By:

Yang, Yang;
Walker, Timothy M;
Kouchaki, Samaneh;
Wang, Chenyang;
Peto, Timothy E A;
Crook, Derrick W;
Consortium, CRYPTIC;
Clifton, David A

Publication type:

Article

Corrigendum to: Computational design of ultrashort peptide inhibitors of the receptor-binding domain of the SARS-CoV-2 S protein.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab298

By:

Pei, Pengfei;
Qin, Hongbo;
Chen, Jialin;
Wang, Fengli;
He, Chengzhi;
He, Shiting;
Hong, Bixia;
Liu, Ke;
Qiao, Renzhong;
Fan, Huahao;
Tong, Yigang;
Chen, Long;
Luo, Shi-Zhong

Publication type:

Article

DeepFeature: feature selection in nonimage data using convolutional neural network.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab297

By:

Sharma, Alok;
Lysenko, Artem;
Boroevich, Keith A;
Vans, Edwin;
Tsunoda, Tatsuhiko

Publication type:

Article

Distance-guided protein folding based on generalized descent direction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab296

By:

Wang, Liujing;
Liu, Jun;
Xia, Yuhao;
Xu, Jiakang;
Zhou, Xiaogen;
Zhang, Guijun

Publication type:

Article

Selecting gene features for unsupervised analysis of single-cell gene expression data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab295

By:

Sheng, Jie;
Li, Wei Vivian

Publication type:

Article

Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab294

By:

Sharifi-Noghabi, Hossein;
Jahangiri-Tazehkand, Soheil;
Smirnov, Petr;
Hon, Casey;
Mammoliti, Anthony;
Nair, Sisira Kadambat;
Mer, Arvind Singh;
Ester, Martin;
Haibe-Kains, Benjamin

Publication type:

Article

Machine learning approaches for drug combination therapies.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab293

By:

Güvenç Paltun, Betül;
Kaski, Samuel;
Mamitsuka, Hiroshi

Publication type:

Article

Tracing the evolution of aneuploid cancers by multiregional sequencing with CRUST.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab292

By:

Chattopadhyay, Subhayan;
Karlsson, Jenny;
Valind, Anders;
Andersson, Natalie;
Gisselsson, David

Publication type:

Article

Comparative analysis of molecular fingerprints in prediction of drug combination effects.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab291

By:

Zagidullin, B;
Wang, Z;
Guan, Y;
Pitkänen, E;
Tang, J

Publication type:

Article