Works matching IS 14675463 AND DT 2021 AND VI 22 AND IP 5

Results: 144

Erratum to: Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab183

By:

Nunn, Adam;
Otto, Christian;
Stadler, Peter F;
Langenberger, David

Publication type:

Article

Corrigendum to: Systemic effects of missense mutations on SARS-CoV-2 spike glycoprotein stability and receptor-binding affinity.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab176

By:

Teng, Shaolei;
Sobitan, Adebiyi;
Rhoades, Raina;
Liu, Dongxiao;
Tang, Qiyi

Publication type:

Article

TIPS: trajectory inference of pathway significance through pseudotime comparison for functional assessment of single-cell RNAseq data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab124

By:

Zheng, Zihan;
Qiu, Xin;
Wu, Haiyang;
Chang, Ling;
Tang, Xiangyu;
Zou, Liyun;
Li, Jingyi;
Wu, Yuzhang;
Zhou, Jianzhi;
Jiang, Shan;
Wan, Ying;
Ni, Qingshan

Publication type:

Article

usDSM: a novel method for deleterious synonymous mutation prediction using undersampling scheme.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab123

By:

Tang, Xi;
Zhang, Tao;
Cheng, Na;
Wang, Huadong;
Zheng, Chun-Hou;
Xia, Junfeng;
Zhang, Tiejun

Publication type:

Article

Integrating multi-scale neighbouring topologies and cross-modal similarities for drug–protein interaction prediction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab119

By:

Xuan, Ping;
Zhang, Yu;
Cui, Hui;
Zhang, Tiangang;
Guo, Maozu;
Nakaguchi, Toshiya

Publication type:

Article

Analyzing master regulators and scRNA-seq of COVID-19 patients reveals an underlying anti-SARS-CoV-2 mechanism of ZNF proteins.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab118

By:

Qin, Shijie;
Xu, Weijun;
Wang, Canbiao;
Jiang, Sizhu;
Dai, Wei;
Yang, Yang;
Shen, Jiawei;
Jin, Ping;
Ma, Fei;
Xia, Xinyi

Publication type:

Article

Deep drug-target binding affinity prediction with multiple attention blocks.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab117

By:

Zeng, Yuni;
Chen, Xiangru;
Luo, Yujie;
Li, Xuedong;
Peng, Dezhong

Publication type:

Article

Bioinformatics and system biology approach to identify the influences of SARS-CoV-2 infections to idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease patients.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab115

By:

Mahmud, S M Hasan;
Al-Mustanjid, Md;
Akter, Farzana;
Rahman, Md Shazzadur;
Ahmed, Kawsar;
Rahman, Md Habibur;
Chen, Wenyu;
Moni, Mohammad Ali

Publication type:

Article

Hyperbolic relational graph convolution networks plus: a simple but highly efficient QSAR-modeling method.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab112

By:

Wu, Zhenxing;
Jiang, Dejun;
Hsieh, Chang-Yu;
Chen, Guangyong;
Liao, Ben;
Cao, Dongsheng;
Hou, Tingjun

Publication type:

Article

SMMPPI: a machine learning-based approach for prediction of modulators of protein–protein interactions and its application for identification of novel inhibitors for RBD:hACE2 interactions in SARS-CoV-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab111

By:

Gupta, Priya;
Mohanty, Debasisa

Publication type:

Article

Is acupuncture effective in the treatment of COVID-19 related symptoms? Based on bioinformatics/network topology strategy.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab110

By:

Han, Zhenzhen;
Zhang, Yang;
Wang, Pengqian;
Tang, Qilin;
Zhang, Kai

Publication type:

Article

Venn diagrams in bioinformatics.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab108

By:

Jia, Anqiang;
Xu, Ling;
Wang, Yi

Publication type:

Article

New framework for recombination and adaptive evolution analysis with application to the novel coronavirus SARS-CoV-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab107

By:

Wang, Yinghan;
Zeng, Jinfeng;
Zhang, Chi;
Chen, Cai;
Qiu, Zekai;
Pang, Jiali;
Xu, Yutian;
Dong, Zhiqi;
Song, Yanxin;
Liu, Weiying;
Dong, Peipei;
Sun, Litao;
Chen, Yao-Qing;
Shu, Yuelong;
Du, Xiangjun

Publication type:

Article

Network-based modeling of herb combinations in traditional Chinese medicine.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab106

By:

Wang, Yinyin;
Yang, Hongbin;
Chen, Linxiao;
Jafari, Mohieddin;
Tang, Jing

Publication type:

Article

Critical downstream analysis steps for single-cell RNA sequencing data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab105

By:

Zhang, Zilong;
Cui, Feifei;
Lin, Chen;
Zhao, Lingling;
Wang, Chunyu;
Zou, Quan

Publication type:

Article

Inference of dynamic spatial GRN models with multi-GPU evolutionary computation.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab104

By:

Mousavi, Reza;
Konuru, Sri Harsha;
Lobo, Daniel

Publication type:

Article

Reusability and composability in process description maps: RAS–RAF–MEK–ERK signalling.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab103

By:

Mazein, Alexander;
Rougny, Adrien;
Karr, Jonathan R;
Saez-Rodriguez, Julio;
Ostaszewski, Marek;
Schneider, Reinhard

Publication type:

Article

Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab102

By:

Islam, Rashedul;
Raju, Rajan Saha;
Tasnim, Nazia;
Shihab, Istiak Hossain;
Bhuiyan, Maruf Ahmed;
Araf, Yusha;
Islam, Tofazzal

Publication type:

Article

SAResNet: self-attention residual network for predicting DNA-protein binding.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab101

By:

Shen, Long-Chen;
Liu, Yan;
Song, Jiangning;
Yu, Dong-Jun

Publication type:

Article

Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab099

By:

Yuan, Danyang;
He, Xiaoyu;
Han, Xinyin;
Yang, Chunyan;
Liu, Fei;
Zhang, Shuying;
Luan, Haijing;
Li, Ruilin;
He, Jiayin;
Duan, Xiaohong;
Wang, Dongliang;
Zhou, Qiming;
Gao, Sujun;
Niu, Beifang

Publication type:

Article

Pharmacoinformatics and molecular dynamics simulation-based phytochemical screening of neem plant (Azadiractha indica) against human cancer by targeting MCM7 protein.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab098

By:

Ahammad, Foysal;
Alam, Rahat;
Mahmud, Rasel;
Akhter, Shahina;
Talukder, Enamul Kabir;
Tonmoy, Al Mahmud;
Fahim, Salman;
Al-Ghamdi, Khalid;
Samad, Abdus;
Qadri, Ishtiaq

Publication type:

Article

Improving feature selection performance for classification of gene expression data using Harris Hawks optimizer with variable neighborhood learning.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab097

By:

Qu, Chiwen;
Zhang, Lupeng;
Li, Jinlong;
Deng, Fang;
Tang, Yifan;
Zeng, Xiaomin;
Peng, Xiaoning

Publication type:

Article

Hierarchical mixed-model expedites genome-wide longitudinal association analysis.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab096

By:

Zhang, Ying;
Song, Yuxin;
Gao, Jin;
Zhang, Hengyu;
Yang, Ning;
Yang, Runqing

Publication type:

Article

ToxCodAn: a new toxin annotator and guide to venom gland transcriptomics.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab095

By:

Nachtigall, Pedro G;
Rautsaw, Rhett M;
Ellsworth, Schyler A;
Mason, Andrew J;
Rokyta, Darin R;
Parkinson, Christopher L;
Junqueira-de-Azevedo, Inácio L M

Publication type:

Article

DisBalance: a platform to automatically build balance-based disease prediction models and discover microbial biomarkers from microbiome data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab094

By:

Yang, Fenglong;
Zou, Quan

Publication type:

Article

eQTLHap: a tool for comprehensive eQTL analysis considering haplotypic and genotypic effects.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab093

By:

Bkhetan, Ziad Al;
Chana, Gursharan;
Ong, Cheng Soon;
Goudey, Benjamin;
Ramamohanarao, Kotagiri

Publication type:

Article

ngsComposer: an automated pipeline for empirically based NGS data quality filtering.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab092

By:

Kuster, Ryan D;
Yencho, G Craig;
Olukolu, Bode A

Publication type:

Article

mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated gain of target interaction diversity and signaling specificity.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab091

By:

Guo, Li;
Li, Yongsheng;
Cirillo, Kara M;
Marick, Robert A;
Su, Zhe;
Yin, Xing;
Hua, Xu;
Mills, Gordon B;
Sahni, Nidhi;
Yi, S Stephen

Publication type:

Article

Deep embedded clustering with multiple objectives on scRNA-seq data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab090

By:

Li, Xiangtao;
Zhang, Shixiong;
Wong, Ka-Chun

Publication type:

Article

A comprehensive review of the imbalance classification of protein post-translational modifications.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab089

By:

Dou, Lijun;
Yang, Fenglong;
Xu, Lei;
Zou, Quan

Publication type:

Article

WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab085

By:

Hu, Yinlei;
Li, Bin;
Zhang, Wen;
Liu, Nianping;
Cai, Pengfei;
Chen, Falai;
Qu, Kun

Publication type:

Article

Comprehensive characterization of alternative splicing in renal cell carcinoma.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab084

By:

Zhang, Yangjun;
Wu, Xiaoliang;
Li, Jingzhen;
Sun, Kui;
Li, Heng;
Yan, Libin;
Duan, Chen;
Liu, Haoran;
Chen, Ke;
Ye, Zhangqun;
Liu, Mugen;
Xu, Hua

Publication type:

Article

Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab083

By:

Xu, Jing;
Li, Fuyi;
Leier, André;
Xiang, Dongxu;
Shen, Hsin-Hui;
Lago, Tatiana T Marquez;
Li, Jian;
Yu, Dong-Jun;
Song, Jiangning

Publication type:

Article

Contribution of structural accessibility to the cooperative relationship of TF-lncRNA in myopia.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab082

By:

Wang, Hong;
Li, Jing;
Wang, Siyu;
Lu, Xiaoyan;
Zhang, Guosi;
Zhuang, Youyuan;
Li, Liansheng;
Wang, Wencan;
Lin, Peng;
Chen, Chong;
Wang, Hao;
Chen, Qi;
Jiang, Yongshuai;
Qu, Jia;
Xu, Liangde

Publication type:

Article

Developing intuitive and explainable algorithms through inspiration from human physiology and computational biology.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab081

By:

Turki, Houcemeddine;
Taieb, Mohamed Ali Hadj;
Aouicha, Mohamed Ben

Publication type:

Article

NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab080

By:

Xiang, Ju;
Zhang, Jiashuai;
Zheng, Ruiqing;
Li, Xingyi;
Li, Min

Publication type:

Article

Bridging heterogeneous mutation data to enhance disease gene discovery.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab079

By:

Zhou, Kaiyin;
Wang, Yuxing;
Cohen, Kevin Bretonnel;
Kim, Jin-Dong;
Ma, Xiaohang;
Shen, Zhixue;
Meng, Xiangyu;
Xia, Jingbo

Publication type:

Article

A spatial-temporal gated attention module for molecular property prediction based on molecular geometry.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab078

By:

Li, Chunyan;
Wang, Jianmin;
Niu, Zhangming;
Yao, Junfeng;
Zeng, Xiangxiang

Publication type:

Article

Multilevel prioritization of gene regulators associated with consensus molecular subtypes of colorectal cancer.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab077

By:

Song, Kai;
Cai, Hao;
Zheng, Hailong;
Yang, Jing;
Jin, Liangliang;
Xiao, Huiting;
Zhang, Jiashuai;
Zhao, Zhangxiang;
Li, Xin;
Zhao, Wenyuan;
Li, Xia

Publication type:

Article

Systematic benchmark of ancient DNA read mapping.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab076

By:

Oliva, Adrien;
Tobler, Raymond;
Cooper, Alan;
Llamas, Bastien;
Souilmi, Yassine

Publication type:

Article

MicroRNA annotation in plants: current status and challenges.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab075

By:

Zhao, Yongxin;
Kuang, Zheng;
Wang, Ying;
Li, Lei;
Yang, Xiaozeng

Publication type:

Article

NMCMDA: neural multicategory MiRNA–disease association prediction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab074

By:

Wang, Jingru;
Li, Jin;
Yue, Kun;
Wang, Li;
Ma, Yuyun;
Li, Qing

Publication type:

Article

A map of mass spectrometry-based in silico fragmentation prediction and compound identification in metabolomics.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab073

By:

Krettler, Christoph A;
Thallinger, Gerhard G

Publication type:

Article

DeepDTAF: a deep learning method to predict protein–ligand binding affinity.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab072

By:

Wang, Kaili;
Zhou, Renyi;
Li, Yaohang;
Li, Min

Publication type:

Article

The landscape of different molecular modules in an immune microenvironment during tuberculosis infection.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab071

By:

Zhang, Nan;
Luo, Xizi;
Huang, JuanJuan;
Song, Hongyan;
Zhang, Xinyue;
Huang, Honglan;
Zhao, Shishun;
Wang, Guoqing

Publication type:

Article

Parallel computing for genome sequence processing.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab070

By:

Zou, You;
Zhu, Yuejie;
Li, Yaohang;
Wu, Fang-Xiang;
Wang, Jianxin

Publication type:

Article

Converting single nucleotide variants between genome builds: from cautionary tale to solution.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab069

By:

Ormond, Cathal;
Ryan, Niamh M;
Corvin, Aiden;
Heron, Elizabeth A

Publication type:

Article

Identification of active molecules against Mycobacterium tuberculosis through machine learning.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab068

By:

Ye, Qing;
Chai, Xin;
Jiang, Dejun;
Yang, Liu;
Shen, Chao;
Zhang, Xujun;
Li, Dan;
Cao, Dongsheng;
Hou, Tingjun

Publication type:

Article

DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab067

By:

Nguyen, Tan-Hoang;
He, Xin;
Brown, Ruth C;
Webb, Bradley T;
Kendler, Kenneth S;
Vladimirov, Vladimir I;
Riley, Brien P;
Bacanu, Silviu-Alin

Publication type:

Article

Deep-ABPpred: identifying antibacterial peptides in protein sequences using bidirectional LSTM with word2vec.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab065

By:

Sharma, Ritesh;
Shrivastava, Sameer;
Singh, Sanjay Kumar;
Kumar, Abhinav;
Saxena, Sonal;
Singh, Raj Kumar

Publication type:

Article