Works matching IS 14675463 AND DT 2021 AND VI 22 AND IP 4

Results: 129

ChemGenerator: a web server for generating potential ligands for specific targets.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa407

By:

Yang, Jing;
Hou, Ling;
Liu, Kun-Meng;
He, Wen-Bin;
Cai, Yong;
Yang, Feng-Qing;
Hu, Yuan-Jia

Publication type:

Article

The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa390

By:

Touré, Vasundra;
Flobak, Åsmund;
Niarakis, Anna;
Vercruysse, Steven;
Kuiper, Martin

Publication type:

Article

Dynamics of transcriptional and post-transcriptional regulation.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa389

By:

Furlan, Mattia;
Pretis, Stefano de;
Pelizzola, Mattia

Publication type:

Article

Identifying age-specific gene signatures of the human cerebral cortex with joint analysis of transcriptomes and functional connectomes.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa388

By:

Zhao, Xingzhong;
Chen, Jingqi;
Xiao, Peipei;
Feng, Jianfeng;
Nie, Qing;
Zhao, Xing-Ming

Publication type:

Article

Classification and characterization of multigene family proteins of African swine fever viruses.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa380

By:

Zhu, Zhaozhong;
Chen, Huiting;
Liu, Li;
Cao, Yang;
Jiang, Taijiao;
Zou, Yuanqiang;
Peng, Yousong

Publication type:

Article

CyanoPATH: a knowledgebase of genome-scale functional repertoire for toxic cyanobacterial blooms.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa375

By:

Du, Wei;
Li, Gaoyang;
Ho, Nicholas;
Jenkins, Landon;
Hockaday, Drew;
Tan, Jiankang;
Cao, Huansheng

Publication type:

Article

idenPC-CAP: Identify protein complexes from weighted RNA-protein heterogeneous interaction networks using co-assemble partner relation.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa372

By:

Wu, Zhourun;
Liao, Qing;
Fan, Shixi;
Liu, Bin

Publication type:

Article

Machine learning-based integrative analysis of methylome and transcriptome identifies novel prognostic DNA methylation signature in uveal melanoma.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa371

By:

Hou, Ping;
Bao, Siqi;
Fan, Dandan;
Yan, Congcong;
Su, Jianzhong;
Qu, Jia;
Zhou, Meng

Publication type:

Article

A deep learning approach for filtering structural variants in short read sequencing data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa370

By:

Liu, Yongzhuang;
Huang, Yalin;
Wang, Guohua;
Wang, Yadong

Publication type:

Article

Pyfastx: a robust Python package for fast random access to sequences from plain and gzipped FASTA/Q files.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa368

By:

Du, Lianming;
Liu, Qin;
Fan, Zhenxin;
Tang, Jie;
Zhang, Xiuyue;
Price, Megan;
Yue, Bisong;
Zhao, Kelei

Publication type:

Article

ITP-Pred: an interpretable method for predicting, therapeutic peptides with fused features low-dimension representation.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa367

By:

Cai, Lijun;
Wang, Li;
Fu, Xiangzheng;
Xia, Chenxing;
Zeng, Xiangxiang;
Zou, Quan

Publication type:

Article

Simulation of African and non-African low and high coverage whole genome sequence data to assess variant calling approaches.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa366

By:

Alosaimi, Shatha;
Biljon, Noëlle van;
Awany, Denis;
Thami, Prisca K;
Defo, Joel;
Mugo, Jacquiline W;
Bope, Christian D;
Mazandu, Gaston K;
Mulder, Nicola J;
Chimusa, Emile R

Publication type:

Article

Deep inverse reinforcement learning for structural evolution of small molecules.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa364

By:

Agyemang, Brighter;
Wu, Wei-Ping;
Addo, Daniel;
Kpiebaareh, Michael Y;
Nanor, Ebenezer;
Haruna, Charles Roland

Publication type:

Article

Automation in signal management in pharmacovigilance—an insight.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa363

By:

Wadhwa, Diksha;
Kumar, Keshav;
Batra, Sonali;
Sharma, Sumit

Publication type:

Article

Improving gene network inference with graph wavelets and making insights about ageing-associated regulatory changes in lungs.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa360

By:

Mishra, Shreya;
Srivastava, Divyanshu;
Kumar, Vibhor

Publication type:

Article

Topological network measures for drug repositioning.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa357

By:

Badkas, Apurva;
Landtsheer, Sébastien De;
Sauter, Thomas

Publication type:

Article

DeepYY1: a deep learning approach to identify YY1-mediated chromatin loops.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa356

By:

Dao, Fu-Ying;
Lv, Hao;
Zhang, Dan;
Zhang, Zi-Mei;
Liu, Li;
Lin, Hao

Publication type:

Article

Deep forest ensemble learning for classification of alignments of non-coding RNA sequences based on multi-view structure representations.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa354

By:

Li, Ying;
Zhang, Qi;
Liu, Zhaoqian;
Wang, Cankun;
Han, Siyu;
Ma, Qin;
Du, Wei

Publication type:

Article

Pathogenic gene prediction based on network embedding.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa353

By:

Liu, Yang;
Guo, Yuchen;
Liu, Xiaoyan;
Wang, Chunyu;
Guo, Maozu

Publication type:

Article

Novel ChIP-seq simulating program with superior versatility: isChIP.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa352

By:

Subkhankulova, Tatiana;
Naumenko, Fedor;
Tolmachov, Oleg E;
Orlov, Yuriy L

Publication type:

Article

NGPINT: a next-generation protein–protein interaction software.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa351

By:

Banerjee, Sagnik;
Velásquez-Zapata, Valeria;
Fuerst, Gregory;
Elmore, J Mitch;
Wise, Roger P

Publication type:

Article

A comprehensive survey on computational methods of non-coding RNA and disease association prediction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa350

By:

Lei, Xiujuan;
Mudiyanselage, Thosini Bamunu;
Zhang, Yuchen;
Bian, Chen;
Lan, Wei;
Yu, Ning;
Pan, Yi

Publication type:

Article

Understanding the unimodal distributions of cancer occurrence rates: it takes two factors for a cancer to occur.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa349

By:

Qiu, Shuang;
An, Zheng;
Tan, Renbo;
He, Ping-an;
Jing, Jingjing;
Li, Hongxia;
Wu, Shuang;
Xu, Ying

Publication type:

Article

Computational drug repositioning based on the relationships between substructure–indication.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa348

By:

Yang, Jingbo;
Zhang, Denan;
Liu, Lei;
Li, Guoqi;
Cai, Yiyang;
Zhang, Yan;
Jin, Hongbo;
Chen, Xiujie

Publication type:

Article

Coupled co-clustering-based unsupervised transfer learning for the integrative analysis of single-cell genomic data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa347

By:

Zeng, Pengcheng;
Wangwu, Jiaxuan;
Lin, Zhixiang

Publication type:

Article

Encyclopedia of tools for the analysis of miRNA isoforms.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa346

By:

Schmartz, Georges Pierre;
Kern, Fabian;
Fehlmann, Tobias;
Wagner, Viktoria;
Fromm, Bastian;
Keller, Andreas

Publication type:

Article

Pan-cancer analysis of NLRP3 inflammasome with potential implications in prognosis and immunotherapy in human cancer.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa345

By:

Ju, Mingyi;
Bi, Jia;
Wei, Qian;
Jiang, Longyang;
Guan, Qiutong;
Zhang, Ming;
Song, Xinyue;
Chen, Ting;
Fan, Jingyi;
Li, Xiaojuan;
Wei, Minjie;
Zhao, Lin

Publication type:

Article

PharmKG: a dedicated knowledge graph benchmark for bomedical data mining.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa344

By:

Zheng, Shuangjia;
Rao, Jiahua;
Song, Ying;
Zhang, Jixian;
Xiao, Xianglu;
Fang, Evandro Fei;
Yang, Yuedong;
Niu, Zhangming

Publication type:

Article

Target shortage and less explored multiple targeting: hurdles in the development of novel antifungals but overcome/addressed effectively through structural bioinformatics.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa343

By:

Jha, Anubhuti;
Vimal, Archana;
Kumar, Awanish

Publication type:

Article

Dppa2/4 as a trigger of signaling pathways to promote zygote genome activation by binding to CG-rich region.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa342

By:

Li, Hanshuang;
Long, Chunshen;
Xiang, Jinzhu;
Liang, Pengfei;
Li, Xueling;
Zuo, Yongchun

Publication type:

Article

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa339

By:

Zhang, Yun;
Aevermann, Brian D;
Bakken, Trygve E;
Miller, Jeremy A;
Hodge, Rebecca D;
Lein, Ed S;
Scheuermann, Richard H

Publication type:

Article

A genome-wide association study to identify candidate genes for erectile dysfunction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa338

By:

Kazemi, Elham;
Zargooshi, Javaad;
Kaboudi, Marzieh;
Heidari, Parviz;
Kahrizi, Danial;
Mahaki, Behzad;
Mohammadian, Youkhabeh;
Khazaei, Habibolah;
Ahmed, Kawsar

Publication type:

Article

FireProt<sup>ASR</sup>: A Web Server for Fully Automated Ancestral Sequence Reconstruction.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa337

By:

Musil, Milos;
Khan, Rayyan Tariq;
Beier, Andy;
Stourac, Jan;
Konegger, Hannes;
Damborsky, Jiri;
Bednar, David

Publication type:

Article

Highly accurate diagnosis of papillary thyroid carcinomas based on personalized pathways coupled with machine learning.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa336

By:

Park, Kyoung Sik;
Kim, Seong Hoon;
Oh, Jung Hun;
Kim, Sung Young

Publication type:

Article

A fine-scale map of genome-wide recombination in divergent Escherichia coli population.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa335

By:

Kang, Yu;
Yuan, Lina;
Shi, Xing;
Chu, Yanan;
He, Zilong;
Jia, Xinmiao;
Lin, Qiang;
Ma, Qin;
Wang, Jian;
Xiao, Jingfa;
Hu, Songnian;
Gao, Zhancheng;
Chen, Fei;
Yu, Jun

Publication type:

Article

C-C Chemokine receptor-like 2 (CCRL2) acts as coreceptor for human immunodeficiency virus-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa333

By:

Islam, Salequl;
Moni, Mohammad Ali;
Urmi, Umme Laila;
Tanaka, Atsushi;
Hoshino, Hiroo

Publication type:

Article

LiBis: an ultrasensitive alignment augmentation for low-input bisulfite sequencing.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa332

By:

Yin, Yue;
Li, Jia;
Li, Jin;
Lee, Minjung;
Zhao, Sibo;
Guo, Linlang;
Li, Jianfang;
Zhang, Mutian;
Huang, Yun;
Li, Xiao-Nan;
Deng, Zhenzhong;
Sun, Deqiang

Publication type:

Article

Optimized combination methods for exploring and verifying disease-resistant transcription factors in melon.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa326

By:

Wang, Zhicheng;
Luan, Yushi;
Zhou, Xiaoxu;
Cui, Jun;
Luan, Feishi;
Meng, Jun

Publication type:

Article

ColorCells: a database of expression, classification and functions of lncRNAs in single cells.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa325

By:

Zheng, Ling-Ling;
Xiong, Jing-Hua;
Zheng, Wu-Jian;
Wang, Jun-Hao;
Huang, Zi-Liang;
Chen, Zhi-Rong;
Sun, Xin-Yao;
Zheng, Yi-Min;
Zhou, Ke-Ren;
Li, Bin;
Liu, Shun;
Qu, Liang-Hu;
Yang, Jian-Hua

Publication type:

Article

A systematic analysis of miRNA markers and classification algorithms for forensic body fluid identification.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa324

By:

Liu, Yang;
He, Hongxia;
Xiao, Zhi-Xiong;
Ji, Anquan;
Ye, Jian;
Sun, Qifan;
Cao, Yang

Publication type:

Article

Comparative viromes of Culicoides and mosquitoes reveal their consistency and diversity in viral profiles.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa323

By:

Liu, Lin;
Shen, Qin;
Li, Nan;
He, Yuwen;
Han, Na;
Wang, Xianyue;
Meng, Jinxin;
Peng, Yousong;
Pan, Mei;
Jin, Yuting;
Jiang, Taijiao;
Tan, Wenjie;
Wang, Jinglin;
Wu, Aiping

Publication type:

Article

Computational methods for annotation of plant regulatory non-coding RNAs using RNA-seq.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa322

By:

Vivek, A T;
Kumar, Shailesh

Publication type:

Article

Do we need different machine learning algorithms for QSAR modeling? A comprehensive assessment of 16 machine learning algorithms on 14 QSAR data sets.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa321

By:

Wu, Zhenxing;
Zhu, Minfeng;
Kang, Yu;
Leung, Elaine Lai-Han;
Lei, Tailong;
Shen, Chao;
Jiang, Dejun;
Wang, Zhe;
Cao, Dongsheng;
Hou, Tingjun

Publication type:

Article

PERHAPS: Paired-End short Reads-based HAPlotyping from next-generation Sequencing data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa320

By:

Huang, Jie;
Pallotti, Stefano;
Zhou, Qianling;
Kleber, Marcus;
Xin, Xiaomeng;
King, Daniel A;
Napolioni, Valerio

Publication type:

Article

Prediction of protein–carbohydrate complex binding affinity using structural features.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa319

By:

Shanmugam, N R Siva;
Blessy, J Jino;
Veluraja, K;
Gromiha, M Michael

Publication type:

Article

Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa318

By:

Moris, Pieter;
Pauw, Joey De;
Postovskaya, Anna;
Gielis, Sofie;
Neuter, Nicolas De;
Bittremieux, Wout;
Ogunjimi, Benson;
Laukens, Kris;
Meysman, Pieter

Publication type:

Article

Unveiling the immune infiltrate modulation in cancer and response to immunotherapy by MIXTURE—an enhanced deconvolution method.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa317

By:

Fernández, Elmer A;
Mahmoud, Yamil D;
Veigas, Florencia;
Rocha, Darío;
Miranda, Matías;
Merlo, Joaquín;
Balzarini, Mónica;
Lujan, Hugo D;
Rabinovich, Gabriel A;
Girotti, María Romina

Publication type:

Article

scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa316

By:

Yu, Bin;
Chen, Chen;
Qi, Ren;
Zheng, Ruiqing;
Skillman-Lawrence, Patrick J;
Wang, Xiaolin;
Ma, Anjun;
Gu, Haiming

Publication type:

Article

DReSS: a method to quantitatively describe the influence of structural perturbations on state spaces of genetic regulatory networks.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa315

By:

Yin, Ziqiao;
Guo, Binghui;
Ma, Shuangge;
Sun, Yifan;
Mi, Zhilong;
Zheng, Zhiming

Publication type:

Article

Goals and approaches for each processing step for single-cell RNA sequencing data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa314

By:

Zhang, Zilong;
Cui, Feifei;
Wang, Chunyu;
Zhao, Lingling;
Zou, Quan

Publication type:

Article