Works matching IS 14675463 AND DT 2021 AND VI 22 AND IP 3
Results: 149
In silico prediction of host–pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbz162
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Letter to the Editor: Methods for mapping quantitative trait loci in autotetraploid species.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbz148
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In silico tools for accurate HLA and KIR inference from clinical sequencing data empower immunogenetics on individual-patient and population scales.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa223
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TEnGExA: an R package based tool for tissue enrichment and gene expression analysis.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa221
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Analysis, identification and visualization of subgroups in genomics.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa217
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Modular arrangements of sequence motifs determine the functional diversity of KDM proteins.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa215
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AlzRiskMR database: an online database for the impact of exposure factors on Alzheimer's disease.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa213
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Depiction of tumor stemlike features and underlying relationships with hazard immune infiltrations based on large prostate cancer cohorts.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa211
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Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa210
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Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa206
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DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa205
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Scanning window analysis of non-coding regions within normal-tumor whole-genome sequence samples.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa203
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Meta-i6mA: an interspecies predictor for identifying DNA N<sup>6</sup>-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa202
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How bioinformatics resources work with G4 RNAs.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa201
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NAMS webserver: coding potential assessment and functional annotation of plant transcripts.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa200
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Challenges in gene-oriented approaches for pangenome content discovery.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa198
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Extended application of genomic selection to screen multiomics data for prognostic signatures of prostate cancer.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa197
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Topoly: Python package to analyze topology of polymers.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa196
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Discerning novel drug targets for treating Mycobacterium avium ss. paratuberculosis-associated autoimmune disorders: an in silico approach.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa195
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Scopy: an integrated negative design python library for desirable HTS/VS database design.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa194
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ProtFold-DFG: protein fold recognition by combining Directed Fusion Graph and PageRank algorithm.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa192
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The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa191
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TERL: classification of transposable elements by convolutional neural networks.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa185
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FS–GBDT: identification multicancer-risk module via a feature selection algorithm by integrating Fisher score and GBDT.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa189
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Towards multi-omics characterization of tumor heterogeneity: a comprehensive review of statistical and machine learning approaches.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa188
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Proteome-scale analysis of phase-separated proteins in immunofluorescence images.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa187
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Deep-belief network for predicting potential miRNA-disease associations.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa186
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A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa190
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Genome-wide discovery of pre-miRNAs: comparison of recent approaches based on machine learning.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa184
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DeepAtomicCharge: a new graph convolutional network-based architecture for accurate prediction of atomic charges.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa183
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Ori-Finder 3: a web server for genome-wide prediction of replication origins in Saccharomyces cerevisiae.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa182
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The winning methods for predicting cellular position in the DREAM single-cell transcriptomics challenge.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa181
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Microsatellite instability status differentially associates with intratumoral immune microenvironment in human cancers.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa180
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LncAS2Cancer: a comprehensive database for alternative splicing of lncRNAs across human cancers.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa179
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LncR2metasta: a manually curated database for experimentally supported lncRNAs during various cancer metastatic events.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa178
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Interpretation of deep learning in genomics and epigenomics.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa177
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Expression profile of immune checkpoint genes and their roles in predicting immunotherapy response.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa176
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Heritability jointly explained by host genotype and microbiome: will improve traits prediction?
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa175
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RNA-binding protein recognition based on multi-view deep feature and multi-label learning.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa174
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The functional determinants in the organization of bacterial genomes.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa172
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An in silico approach to identification, categorization and prediction of nucleic acid binding proteins.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa171
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Vertical integration methods for gene expression data analysis.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa169
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Large-scale benchmark study of survival prediction methods using multi-omics data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa167
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A powerful framework for an integrative study with heterogeneous omics data: from univariate statistics to multi-block analysis.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa166
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Integrated omics analysis reveals the alteration of gut microbe–metabolites in obese adults.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa165
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Prognosis and personalized treatment prediction in TP53-mutant hepatocellular carcinoma: an in silico strategy towards precision oncology.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa164
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An approach for normalization and quality control for NanoString RNA expression data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa163
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SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa162
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MolAICal: a soft tool for 3D drug design of protein targets by artificial intelligence and classical algorithm.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa161
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Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa160
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