Works matching IS 14675463 AND DT 2020 AND VI 21 AND IP 6

Results: 27

Deep learning of pharmacogenomics resources: moving towards precision oncology.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2066, doi. 10.1093/bib/bbz144

By:

Chiu, Yu-Chiao;
Chen, Hung-I Harry;
Gorthi, Aparna;
Mostavi, Milad;
Zheng, Siyuan;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Combining clinical and molecular data in regression prediction models: insights from a simulation study.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1904, doi. 10.1093/bib/bbz136

By:

Bin, Riccardo De;
Boulesteix, Anne-Laure;
Benner, Axel;
Becker, Natalia;
Sauerbrei, Willi

Publication type:

Article

MotifCNN-fold: protein fold recognition based on fold-specific features extracted by motif-based convolutional neural networks.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2133, doi. 10.1093/bib/bbz133

By:

Li, Chen-Chen;
Liu, Bin

Publication type:

Article

Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor sets.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2112, doi. 10.1093/bib/bbz143

By:

Çınaroğlu, Süleyman Selim;
Timuçin, Emel

Publication type:

Article

Bioinformatics-assisted, integrated omics studies on medicinal plants.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1857, doi. 10.1093/bib/bbz132

By:

Ma, Xiaoxia;
Meng, Yijun;
Wang, Pu;
Tang, Zhonghai;
Wang, Huizhong;
Xie, Tian

Publication type:

Article

Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2011, doi. 10.1093/bib/bbz138

By:

Pierre-Jean, Morgane;
Deleuze, Jean-François;
Floch, Edith Le;
Mauger, Florence

Publication type:

Article

A comprehensive evaluation of connectivity methods for L1000 data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2194, doi. 10.1093/bib/bbz129

By:

Lin, Kequan;
Li, Lu;
Dai, Yifei;
Wang, Huili;
Teng, Shuaishuai;
Bao, Xilinqiqige;
Lu, Zhi John;
Wang, Dong

Publication type:

Article

RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2167, doi. 10.1093/bib/bbz142

By:

Dong, Qun;
Li, Feng;
Xu, Yanjun;
Xiao, Jing;
Xu, Yingqi;
Shang, Desi;
Zhang, Chunlong;
Yang, Haixiu;
Tian, Zihan;
Mi, Kai;
Li, Xia;
Zhang, Yunpeng

Publication type:

Article

LARMD: integration of bioinformatic resources to profile ligand-driven protein dynamics with a case on the activation of estrogen receptor.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2206, doi. 10.1093/bib/bbz141

By:

Yang, Jing-Fang;
Wang, Fan;
Chen, Yu-Zong;
Hao, Ge-Fei;
Yang, Guang-Fu

Publication type:

Article

Fold-LTR-TCP: protein fold recognition based on triadic closure principle.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2185, doi. 10.1093/bib/bbz139

By:

Liu, Bin;
Zhu, Yulin;
Yan, Ke

Publication type:

Article

Landscape of cancer diagnostic biomarkers from specifically expressed genes.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2175, doi. 10.1093/bib/bbz131

By:

Lv, Yao;
Lin, Sheng-Yan;
Hu, Fei-Fei;
Ye, Zheng;
Zhang, Qiong;
Wang, Yan;
Guo, An-Yuan

Publication type:

Article

A novel bioinformatics approach to identify the consistently well-performing normalization strategy for current metabolomic studies.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2142, doi. 10.1093/bib/bbz137

By:

Yang, Qingxia;
Hong, Jiajun;
Li, Yi;
Xue, Weiwei;
Li, Song;
Yang, Hui;
Zhu, Feng

Publication type:

Article

FluReassort: a database for the study of genomic reassortments among influenza viruses.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2126, doi. 10.1093/bib/bbz128

By:

Ding, Xiao;
Yuan, Xuye;
Mao, Longfei;
Wu, Aiping;
Jiang, Taijiao

Publication type:

Article

Decoding the similarities and specific differences between latent and active tuberculosis infections based on consistently differential expression networks.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2084, doi. 10.1093/bib/bbz127

By:

Sun, Jun;
Shi, Qianqian;
Chen, Xi;
Liu, Rong

Publication type:

Article

Systematic evaluation of differential splicing tools for RNA-seq studies.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2052, doi. 10.1093/bib/bbz126

By:

Mehmood, Arfa;
Laiho, Asta;
Venäläinen, Mikko S;
McGlinchey, Aidan J;
Wang, Ning;
Elo, Laura L

Publication type:

Article

A novel molecular representation with BiGRU neural networks for learning atom.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2099, doi. 10.1093/bib/bbz125

By:

Lin, Xuan;
Quan, Zhe;
Wang, Zhi-Jie;
Huang, Huang;
Zeng, Xiangxiang

Publication type:

Article

An omics perspective on drug target discovery platforms.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1937, doi. 10.1093/bib/bbz122

By:

Paananen, Jussi;
Fortino, Vittorio

Publication type:

Article

A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1920, doi. 10.1093/bib/bbz121

By:

Sathyanarayanan, Anita;
Gupta, Rohit;
Thompson, Erik W;
Nyholt, Dale R;
Bauer, Denis C;
Nagaraj, Shivashankar H

Publication type:

Article

Cardioinformatics: the nexus of bioinformatics and precision cardiology.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2031, doi. 10.1093/bib/bbz119

By:

Khomtchouk, Bohdan B;
Tran, Diem-Trang;
Vand, Kasra A;
Might, Matthew;
Gozani, Or;
Assimes, Themistocles L

Publication type:

Article

Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2153, doi. 10.1093/bib/bbz113

By:

Xu, Yanjun;
Wu, Tan;
Li, Feng;
Dong, Qun;
Wang, Jingwen;
Shang, Desi;
Xu, Yingqi;
Zhang, Chunlong;
Dou, Yiying;
Hu, Congxue;
Yang, Haixiu;
Zheng, Xuan;
Zhang, Yunpeng;
Wang, Lihua;
Li, Xia

Publication type:

Article

What's the target: understanding two decades of in silico microRNA-target prediction.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1999, doi. 10.1093/bib/bbz111

By:

Kern, Fabian;
Backes, Christina;
Hirsch, Pascal;
Fehlmann, Tobias;
Hart, Martin;
Meese, Eckart;
Keller, Andreas

Publication type:

Article

Biomedical named entity recognition and linking datasets: survey and our recent development.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2219, doi. 10.1093/bib/bbaa054

By:

Huang, Ming-Siang;
Lai, Po-Ting;
Lin, Pei-Yen;
You, Yu-Ting;
Tsai, Richard Tzong-Han;
Hsu, Wen-Lian

Publication type:

Article

Methods and resources to access mutation-dependent effects on cancer drug treatment.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1886, doi. 10.1093/bib/bbz109

By:

Yao, Hongcheng;
Liang, Qian;
Qian, Xinyi;
Wang, Junwen;
Sham, Pak Chung;
Li, Mulin Jun

Publication type:

Article

Managing batch effects in microbiome data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1954, doi. 10.1093/bib/bbz105

By:

Wang, Yiwen;
LêCao, Kim-Anh

Publication type:

Article

Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1971, doi. 10.1093/bib/bbz099

By:

Chiara, Matteo;
Zambelli, Federico;
Picardi, Ernesto;
Horner, David S;
Pesole, Graziano

Publication type:

Article

Towards scaling elementary flux mode computation.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1875, doi. 10.1093/bib/bbz094

By:

Ullah, Ehsan;
Yosafshahi, Mona;
Hassoun, Soha

Publication type:

Article

A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 1987, doi. 10.1093/bib/bbz110

By:

Bella, Sebastiano Di;
Ferlita, Alessandro La;
Carapezza, Giovanni;
Alaimo, Salvatore;
Isacchi, Antonella;
Ferro, Alfredo;
Pulvirenti, Alfredo;
Bosotti, Roberta

Publication type:

Article