Works matching IS 14675463 AND DT 2020 AND VI 21 AND IP 5

Results: 28

A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1568, doi. 10.1093/bib/bbz123

By:

Yang, Hui;
Yang, Wuritu;
Dao, Fu-Ying;
Lv, Hao;
Ding, Hui;
Chen, Wei;
Lin, Hao

Publication type:

Article

Convolutional neural network-based annotation of bacterial type IV secretion system effectors with enhanced accuracy and reduced false discovery.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1825, doi. 10.1093/bib/bbz120

By:

Hong, Jiajun;
Luo, Yongchao;
Mou, Minjie;
Fu, Jianbo;
Zhang, Yang;
Xue, Weiwei;
Xie, Tian;
Tao, Lin;
Lou, Yan;
Zhu, Feng

Publication type:

Article

Computational identification of mutator-derived lncRNA signatures of genome instability for improving the clinical outcome of cancers: a case study in breast cancer.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1742, doi. 10.1093/bib/bbz118

By:

Bao, Siqi;
Zhao, Hengqiang;
Yuan, Jian;
Fan, Dandan;
Zhang, Zicheng;
Su, Jianzhong;
Zhou, Meng

Publication type:

Article

FRANC: a unified framework for multi-way local ancestry deconvolution with high density SNP data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1837, doi. 10.1093/bib/bbz117

By:

Geza, Ephifania;
Mulder, Nicola J;
Chimusa, Emile R;
Mazandu, Gaston K

Publication type:

Article

Community curation of bioinformatics software and data resources.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1697, doi. 10.1093/bib/bbz075

By:

Ison, Jon;
Ménager, Hervé;
Brancotte, Bryan;
Jaaniso, Erik;
Salumets, Ahto;
Raček, Tomáš;
Lamprecht, Anna-Lena;
Palmblad, Magnus;
Kalaš, Matúš;
Chmura, Piotr;
Hancock, John M;
Schwämmle, Veit;
Ienasescu, Hans-Ioan

Publication type:

Article

CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1818, doi. 10.1093/bib/bbz116

By:

Zhao, Qi;
Sun, Yu;
Liu, Zekun;
Zhang, Hongwan;
Li, Xingyang;
Zhu, Kaiyu;
Liu, Ze-Xian;
Ren, Jian;
Zuo, Zhixiang

Publication type:

Article

Optimization of in silico tools for predicting genetic variants: individualizing for genes with molecular sub-regional stratification.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1776, doi. 10.1093/bib/bbz115

By:

Tang, Bin;
Li, Bin;
Gao, Liang-Di;
He, Na;
Liu, Xiao-Rong;
Long, Yue-Sheng;
Zeng, Yang;
Yi, Yong-Hong;
Su, Tao;
Liao, Wei-Ping

Publication type:

Article

Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1676, doi. 10.1093/bib/bbz112

By:

Chen, Zhen;
Zhao, Pei;
Li, Fuyi;
Wang, Yanan;
Smith, A Ian;
Webb, Geoffrey I;
Akutsu, Tatsuya;
Baggag, Abdelkader;
Bensmail, Halima;
Song, Jiangning

Publication type:

Article

Computational/in silico methods in drug target and lead prediction.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1663, doi. 10.1093/bib/bbz103

By:

Agamah, Francis E;
Mazandu, Gaston K;
Hassan, Radia;
Bope, Christian D;
Thomford, Nicholas E;
Ghansah, Anita;
Chimusa, Emile R

Publication type:

Article

Accuracy of protein-level disorder predictions.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1509, doi. 10.1093/bib/bbz100

By:

Katuwawala, Akila;
Oldfield, Christopher J;
Kurgan, Lukasz

Publication type:

Article

Genotype imputation and reference panel: a systematic evaluation on haplotype size and diversity.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1806, doi. 10.1093/bib/bbz108

By:

Bai, Wei-Yang;
Zhu, Xiao-Wei;
Cong, Pei-Kuan;
Zhang, Xue-Jun;
Richards, J Brent;
Zheng, Hou-Feng

Publication type:

Article

Deep learning based prediction of reversible HAT/HDAC-specific lysine acetylation.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1798, doi. 10.1093/bib/bbz107

By:

Yu, Kai;
Zhang, Qingfeng;
Liu, Zekun;
Du, Yimeng;
Gao, Xinjiao;
Zhao, Qi;
Cheng, Han;
Li, Xiaoxing;
Liu, Ze-Xian

Publication type:

Article

Critical evaluation of web-based prediction tools for human protein subcellular localization.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1628, doi. 10.1093/bib/bbz106

By:

Shen, Yinan;
Ding, Yijie;
Tang, Jijun;
Zou, Quan;
Guo, Fei

Publication type:

Article

Corrigendum to: Comprehensive review and empirical analysis of hallmarks of DNA-, RNA- and protein-binding residues in protein chains.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1856, doi. 10.1093/bib/bbz102

By:

Zhang, Jian;
Zhiqiang, Ma;
Kurgan, Lukasz

Publication type:

Article

DeepSVM-fold: protein fold recognition by combining support vector machines and pairwise sequence similarity scores generated by deep learning networks.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1733, doi. 10.1093/bib/bbz098

By:

Liu, Bin;
Li, Chen-Chen;
Yan, Ke

Publication type:

Article

Quantile regression for challenging cases of eQTL mapping.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1756, doi. 10.1093/bib/bbz097

By:

Sun, Bo;
Chen, Liang

Publication type:

Article

Evaluation of single-cell classifiers for single-cell RNA sequencing data sets.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1581, doi. 10.1093/bib/bbz096

By:

Zhao, Xinlei;
Wu, Shuang;
Fang, Nan;
Sun, Xiao;
Fan, Jue

Publication type:

Article

Computational approaches to therapeutic antibody design: established methods and emerging trends.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1549, doi. 10.1093/bib/bbz095

By:

Norman, Richard A;
Ambrosetti, Francesco;
Bonvin, Alexandre M J J;
Colwell, Lucy J;
Kelm, Sebastian;
Kumar, Sandeep;
Krawczyk, Konrad

Publication type:

Article

Universal concept signature analysis: genome-wide quantification of new biological and pathological functions of genes and pathways.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1717, doi. 10.1093/bib/bbz093

By:

Chi, Xu;
Sartor, Maureen A;
Lee, Sanghoon;
Anurag, Meenakshi;
Patil, Snehal;
Hall, Pelle;
Wexler, Matthew;
Wang, Xiao-Song

Publication type:

Article

Tools for fundamental analysis functions of TCR repertoires: a systematic comparison.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1706, doi. 10.1093/bib/bbz092

By:

Zhang, Yanfang;
Yang, Xiujia;
Zhang, Yanxia;
Zhang, Yan;
Wang, Minhui;
Ou, Jin Xia;
Zhu, Yan;
Zeng, Huikun;
Wu, Jiaqi;
Lan, Chunhong;
Zhou, Hong-Wei;
Yang, Wei;
Zhang, Zhenhai

Publication type:

Article

Gene set analysis methods for the functional interpretation of non-mRNA data—Genomic range and ncRNA data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1495, doi. 10.1093/bib/bbz090

By:

Mora, Antonio

Publication type:

Article

Network control principles for identifying personalized driver genes in cancer.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1641, doi. 10.1093/bib/bbz089

By:

Guo, Wei-Feng;
Zhang, Shao-Wu;
Zeng, Tao;
Akutsu, Tatsuya;
Chen, Luonan

Publication type:

Article

Deep learning for drug–drug interaction extraction from the literature: a review.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1609, doi. 10.1093/bib/bbz087

By:

Zhang, Tianlin;
Leng, Jiaxu;
Liu, Ying

Publication type:

Article

ACPred-Fuse: fusing multi-view information improves the prediction of anticancer peptides.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1846, doi. 10.1093/bib/bbz088

By:

Rao, Bing;
Zhou, Chen;
Zhang, Guoying;
Su, Ran;
Wei, Leyi

Publication type:

Article

A beginner's guide for FMDV quasispecies analysis: sub-consensus variant detection and haplotype reconstruction using next-generation sequencing.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1766, doi. 10.1093/bib/bbz086

By:

Cacciabue, Marco;
Currá, Anabella;
Carrillo, Elisa;
König, Guido;
Gismondi, María Inés

Publication type:

Article

A comprehensive review and evaluation of computational methods for identifying protein complexes from protein–protein interaction networks.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1531, doi. 10.1093/bib/bbz085

By:

Wu, Zhourun;
Liao, Qing;
Liu, Bin

Publication type:

Article

Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1523, doi. 10.1093/bib/bbz083

By:

Salvatore, Stefania;
Rand, Knut Dagestad;
Grytten, Ivar;
Ferkingstad, Egil;
Domanska, Diana;
Holden, Lars;
Gheorghe, Marius;
Mathelier, Anthony;
Glad, Ingrid;
Sandve, Geir Kjetil

Publication type:

Article

Predicting bacterial virulence factors – evaluation of machine learning and negative data strategies.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 5, p. 1596, doi. 10.1093/bib/bbz076

By:

Rentzsch, Robert;
Deneke, Carlus;
Nitsche, Andreas;
Renard, Bernhard Y

Publication type:

Article