Works matching IS 14675463 AND DT 2020 AND VI 21 AND IP 4

Results: 31

Heterogeneous information network and its application to human health and disease.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1327, doi. 10.1093/bib/bbz091

By:

Ding, Pingjian;
Ouyang, Wenjue;
Luo, Jiawei;
Kwoh, Chee-Keong

Publication type:

Article

MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1479, doi. 10.1093/bib/bbz084

By:

Ping, Jie;
Oyebamiji, Olufunmilola;
Yu, Hui;
Ness, Scott;
Chien, Jeremy;
Ye, Fei;
Kang, Huining;
Samuels, David;
Ivanov, Sergey;
Chen, Danqian;
Zhao, Ying-yong;
Guo, Yan

Publication type:

Article

Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA–TF–gene network approach in humans and mice.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1465, doi. 10.1093/bib/bbz082

By:

Li, Aimin;
Jia, Peilin;
Mallik, Saurav;
Fei, Rong;
Yoshioka, Hiroki;
Suzuki, Akiko;
Iwata, Junichi;
Zhao, Zhongming

Publication type:

Article

Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1437, doi. 10.1093/bib/bbz081

By:

Hong, Jiajun;
Luo, Yongchao;
Zhang, Yang;
Ying, Junbiao;
Xue, Weiwei;
Xie, Tian;
Tao, Lin;
Zhu, Feng

Publication type:

Article

Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1425, doi. 10.1093/bib/bbz080

By:

Zeng, Xiangxiang;
Zhong, Yue;
Lin, Wei;
Zou, Quan

Publication type:

Article

Circulating microRNA trafficking and regulation: computational principles and practice.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1313, doi. 10.1093/bib/bbz079

By:

Cui, Juan;
Shu, Jiang

Publication type:

Article

HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1411, doi. 10.1093/bib/bbz078

By:

Li, Meng;
Zhao, Jianmei;
Li, Xuecang;
Chen, Yang;
Feng, Chenchen;
Qian, Fengcui;
Liu, Yuejuan;
Zhang, Jian;
He, Jianzhong;
Ai, Bo;
Ning, Ziyu;
Liu, Wei;
Bai, Xuefeng;
Han, Xiaole;
Wu, Zhiyong;
Xu, Xiue;
Tang, Zhidong;
Pan, Qi;
Xu, Liyan;
Li, Chunquan

Publication type:

Article

Some comments on certain statistical aspects of the study of the microbiome.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1487, doi. 10.1093/bib/bbz077

By:

Ferreira, José A;
Fuentes, Susana

Publication type:

Article

Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1302, doi. 10.1093/bib/bbz074

By:

Ebrahimpoor, Mitra;
Spitali, Pietro;
Hettne, Kristina;
Tsonaka, Roula;
Goeman, Jelle

Publication type:

Article

Location deviations of DNA functional elements affected SNP mapping in the published databases and references.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1293, doi. 10.1093/bib/bbz073

By:

Zheng, Hewei;
Zhao, Xueying;
Wang, Hong;
Ding, Yu;
Lu, Xiaoyan;
Zhang, Guosi;
Yang, Jiaxin;
Wang, Lianzong;
Zhang, Haotian;
Bai, Yu;
Li, Jing;
Wu, Jingqi;
Jiang, Yongshuai;
Xu, Liangde

Publication type:

Article

New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1397, doi. 10.1093/bib/bbz072

By:

Chen, Hebing;
Zhang, Zhuo;
Jiang, Shuai;
Li, Ruijiang;
Li, Wanying;
Zhao, Chenghui;
Hong, Hao;
Huang, Xin;
Li, Hao;
Bo, Xiaochen

Publication type:

Article

A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1285, doi. 10.1093/bib/bbz071

By:

Fang, Jianwen

Publication type:

Article

Consistency and overfitting of multi-omics methods on experimental data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1277, doi. 10.1093/bib/bbz070

By:

McCabe, Sean D;
Lin, Dan-Yu;
Love, Michael I

Publication type:

Article

Data imbalance in CRISPR off-target prediction.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1448, doi. 10.1093/bib/bbz069

By:

Gao, Yuli;
Chuai, Guohui;
Yu, Weichuan;
Qu, Shen;
Liu, Qi

Publication type:

Article

A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1261, doi. 10.1093/bib/bbz068

By:

Chen, Moliang;
Ji, Guoli;
Fu, Hongjuan;
Lin, Qianmin;
Ye, Congting;
Ye, Wenbin;
Su, Yaru;
Wu, Xiaohui

Publication type:

Article

Closing the gap between formats for storing layout information in systems biology.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1249, doi. 10.1093/bib/bbz067

By:

Hoksza, David;
Gawron, Piotr;
Ostaszewski, Marek;
Hasenauer, Jan;
Schneider, Reinhard

Publication type:

Article

A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1391, doi. 10.1093/bib/bbz066

By:

Kunz, Meik;
Wolf, Beat;
Fuchs, Maximilian;
Christoph, Jan;
Xiao, Ke;
Thum, Thomas;
Atlan, David;
Prokosch, Hans-Ulrich;
Dandekar, Thomas

Publication type:

Article

Data-driven rational biosynthesis design: from molecules to cell factories.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1238, doi. 10.1093/bib/bbz065

By:

Chen, Fu;
Yuan, Le;
Ding, Shaozhen;
Tian, Yu;
Hu, Qian-Nan

Publication type:

Article

Genome-wide functional association networks: background, data & state-of-the-art resources.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1224, doi. 10.1093/bib/bbz064

By:

Guala, Dimitri;
Ogris, Christoph;
Müller, Nikola;
Sonnhammer, Erik L L

Publication type:

Article

Machine learning and statistical methods for clustering single-cell RNA-sequencing data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1209, doi. 10.1093/bib/bbz063

By:

Petegrosso, Raphael;
Li, Zhuliu;
Kuang, Rui

Publication type:

Article

Clustering and classification methods for single-cell RNA-sequencing data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1196, doi. 10.1093/bib/bbz062

By:

Qi, Ren;
Ma, Anjun;
Ma, Qin;
Zou, Quan

Publication type:

Article

A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studies.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1378, doi. 10.1093/bib/bbz061

By:

Tang, Jing;
Wang, Yunxia;
Fu, Jianbo;
Zhou, Ying;
Luo, Yongchao;
Zhang, Ying;
Li, Bo;
Yang, Qingxia;
Xue, Weiwei;
Lou, Yan;
Qiu, Yunqing;
Zhu, Feng

Publication type:

Article

Mitochondrial DNA enrichment reduced NUMT contamination in porcine NGS analyses.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1368, doi. 10.1093/bib/bbz060

By:

Wang, Dan;
Xiang, Hai;
Ning, Chao;
Liu, Hao;
Liu, Jian-Feng;
Zhao, Xingbo

Publication type:

Article

Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1182, doi. 10.1093/bib/bbz059

By:

Liu, Andrew C;
Patel, Krishna;
Vunikili, Ramya Dhatri;
Johnson, Kipp W;
Abdu, Fahad;
Belman, Shivani Kamath;
Glicksberg, Benjamin S;
Tandale, Pratyush;
Fontanez, Roberto;
Mathew, Oommen K;
Kasarskis, Andrew;
Mukherjee, Priyabrata;
Subramanian, Lakshminarayanan;
Dudley, Joel T;
Shameer, Khader

Publication type:

Article

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1164, doi. 10.1093/bib/bbz058

By:

Lima, Leandro;
Marchet, Camille;
Caboche, Ségolène;
Silva, Corinne Da;
Istace, Benjamin;
Aury, Jean-Marc;
Touzet, Hélène;
Chikhi, Rayan

Publication type:

Article

iCircDA-MF: identification of circRNA-disease associations based on matrix factorization.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1356, doi. 10.1093/bib/bbz057

By:

Wei, Hang;
Liu, Bin

Publication type:

Article

Systematic analysis of supervised machine learning as an effective approach to predicate β-lactam resistance phenotype in Streptococcus pneumoniae.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1347, doi. 10.1093/bib/bbz056

By:

Zhang, Chaodong;
Ju, Yingjiao;
Tang, Na;
Li, Yun;
Zhang, Gang;
Song, Yuqin;
Fang, Hailing;
Yang, Liang;
Feng, Jie

Publication type:

Article

MENDA: a comprehensive curated resource of metabolic characterization in depression.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1455, doi. 10.1093/bib/bbz055

By:

Pu, Juncai;
Yu, Yue;
Liu, Yiyun;
Tian, Lu;
Gui, Siwen;
Zhong, Xiaogang;
Fan, Chu;
Xu, Shaohua;
Song, Xuemian;
Liu, Lanxiang;
Yang, Lining;
Zheng, Peng;
Chen, Jianjun;
Cheng, Ke;
Zhou, Chanjuan;
Wang, Haiyang;
Xie, Peng

Publication type:

Article

RNA-mediated translation regulation in viral genomes: computational advances in the recognition of sequences and structures.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1151, doi. 10.1093/bib/bbz054

By:

Gupta, Asmita;
Bansal, Manju

Publication type:

Article

An overview of diffusion models for intracellular dynamics analysis.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1136, doi. 10.1093/bib/bbz052

By:

Briane, Vincent;
Vimond, Myriam;
Kervrann, Charles

Publication type:

Article

A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1119, doi. 10.1093/bib/bbz051

By:

Mei, Shutao;
Li, Fuyi;
Leier, André;
Marquez-Lago, Tatiana T;
Giam, Kailin;
Croft, Nathan P;
Akutsu, Tatsuya;
Smith, A Ian;
Li, Jian;
Rossjohn, Jamie;
Purcell, Anthony W;
Song, Jiangning

Publication type:

Article