Works matching IS 14675463 AND DT 2020 AND VI 21 AND IP 3

Results: 30

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1069, doi. 10.1093/bib/bbz050

By:

Li, Fuyi;
Fan, Cunshuo;
Marquez-Lago, Tatiana T;
Leier, André;
Revote, Jerico;
Jia, Cangzhi;
Zhu, Yan;
Smith, A Ian;
Webb, Geoffrey I;
Liu, Quanzhong;
Wei, Leyi;
Li, Jian;
Song, Jiangning

Publication type:

Article

Consistent gene signature of schizophrenia identified by a novel feature selection strategy from comprehensive sets of transcriptomic data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1058, doi. 10.1093/bib/bbz049

By:

Yang, Qingxia;
Li, Bo;
Tang, Jing;
Cui, Xuejiao;
Wang, Yunxia;
Li, Xiaofeng;
Hu, Jie;
Chen, Yuzong;
Xue, Weiwei;
Lou, Yan;
Qiu, Yunqing;
Zhu, Feng

Publication type:

Article

Evaluation of different computational methods on 5-methylcytosine sites identification.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 982, doi. 10.1093/bib/bbz048

By:

Lv, Hao;
Zhang, Zi-Mei;
Li, Shi-Hao;
Tan, Jiu-Xin;
Chen, Wei;
Lin, Hao

Publication type:

Article

Comparison and integration of computational methods for deleterious synonymous mutation prediction.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 970, doi. 10.1093/bib/bbz047

By:

Cheng, Na;
Li, Menglu;
Zhao, Le;
Zhang, Bo;
Yang, Yuhua;
Zheng, Chun-Hou;
Xia, Junfeng

Publication type:

Article

A comprehensive overview of oncogenic pathways in human cancer.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 957, doi. 10.1093/bib/bbz046

By:

Li, Feng;
Wu, Tan;
Xu, Yanjun;
Dong, Qun;
Xiao, Jing;
Xu, Yingqi;
Li, Qian;
Zhang, Chunlong;
Gao, Jianxia;
Liu, Liqiu;
Hu, Xiaoxu;
Huang, Jian;
Li, Xia;
Zhang, Yunpeng

Publication type:

Article

Transcription factors–DNA interactions in rice: identification and verification.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 946, doi. 10.1093/bib/bbz045

By:

Shen, Zijie;
Lin, Yuan;
Zou, Quan

Publication type:

Article

Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 936, doi. 10.1093/bib/bbz044

By:

Vesteghem, Charles;
Brøndum, Rasmus Froberg;
Sønderkær, Mads;
Sommer, Mia;
Schmitz, Alexander;
Bødker, Julie Støve;
Dybkær, Karen;
El-Galaly, Tarec Christoffer;
Bøgsted, Martin

Publication type:

Article

Characterization and identification of antimicrobial peptides with different functional activities.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1098, doi. 10.1093/bib/bbz043

By:

Chung, Chia-Ru;
Kuo, Ting-Rung;
Wu, Li-Ching;
Lee, Tzong-Yi;
Horng, Jorng-Tzong

Publication type:

Article

Graph convolutional networks for computational drug development and discovery.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 919, doi. 10.1093/bib/bbz042

By:

Sun, Mengying;
Zhao, Sendong;
Gilvary, Coryandar;
Elemento, Olivier;
Zhou, Jiayu;
Wang, Fei

Publication type:

Article

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1047, doi. 10.1093/bib/bbz041

By:

Chen, Zhen;
Zhao, Pei;
Li, Fuyi;
Marquez-Lago, Tatiana T;
Leier, André;
Revote, Jerico;
Zhu, Yan;
Powell, David R;
Akutsu, Tatsuya;
Webb, Geoffrey I;
Chou, Kuo-Chen;
Smith, A Ian;
Daly, Roger J;
Li, Jian;
Song, Jiangning

Publication type:

Article

Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomas.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1080, doi. 10.1093/bib/bbz040

By:

Zhang, Ji;
Guan, Meige;
Wang, Qianliang;
Zhang, Jiajun;
Zhou, Tianshou;
Sun, Xiaoqiang

Publication type:

Article

DNA methylation analysis in plants: review of computational tools and future perspectives.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 906, doi. 10.1093/bib/bbz039

By:

Omony, Jimmy;
Nussbaumer, Thomas;
Gutzat, Ruben

Publication type:

Article

100 Years of evolving gene–disease complexities and scientific debutants.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 885, doi. 10.1093/bib/bbz038

By:

Zeeshan, Saman;
Xiong, Ruoyun;
Liang, Bruce T;
Ahmed, Zeeshan

Publication type:

Article

A feature-based approach to predict hot spots in protein–DNA binding interfaces.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1038, doi. 10.1093/bib/bbz037

By:

Zhang, Sijia;
Zhao, Le;
Zheng, Chun-Hou;
Xia, Junfeng

Publication type:

Article

In silico signaling modeling to understand cancer pathways and treatment responses.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1115, doi. 10.1093/bib/bbz033

By:

Kunz, Meik;
Jeromin, Julian;
Fuchs, Maximilian;
Christoph, Jan;
Veronesi, Giulia;
Flentje, Michael;
Nietzer, Sarah;
Dandekar, Gudrun;
Dandekar, Thomas

Publication type:

Article

Evaluation of drug efficacy based on the spatial position comparison of drug–target interaction centers.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 762, doi. 10.1093/bib/bbz024

By:

Ding, Yu;
Wang, Hong;
Zheng, Hewei;
Wang, Lianzong;
Zhang, Guosi;
Yang, Jiaxin;
Lu, Xiaoyan;
Bai, Yu;
Zhang, Haotian;
Li, Jing;
Gao, Wenyan;
Chen, Fukun;
Hu, Shui;
Wu, Jingqi;
Xu, Liangde

Publication type:

Article

Shaping the nebulous enhancer in the era of high-throughput assays and genome editing.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 836, doi. 10.1093/bib/bbz030

By:

Ho, Edwin Yu-Kiu;
Cao, Qin;
Gu, Mengting;
Chan, Ricky Wai-Lun;
Wu, Qiong;
Gerstein, Mark;
Yip, Kevin Y

Publication type:

Article

Genome-wide identification and analysis of the eQTL lncRNAs in multiple sclerosis based on RNA-seq data.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1023, doi. 10.1093/bib/bbz036

By:

Han, Zhijie;
Xue, Weiwei;
Tao, Lin;
Lou, Yan;
Qiu, Yunqing;
Zhu, Feng

Publication type:

Article

Molecular Biology Information Service: an innovative medical library-based bioinformatics support service for biomedical researchers.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 876, doi. 10.1093/bib/bbz035

By:

Chattopadhyay, Ansuman;
Iwema, Carrie L;
Epstein, Barbara A;
Lee, Adrian V;
Levine, Arthur S

Publication type:

Article

Identifying psychiatric disorder-associated gut microbiota using microbiota-related gene set enrichment analysis.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1016, doi. 10.1093/bib/bbz034

By:

Cheng, Shiqiang;
Han, Bei;
Ding, Miao;
Wen, Yan;
Ma, Mei;
Zhang, Lu;
Qi, Xin;
Cheng, Bolun;
Li, Ping;
Kafle, Om Prakash;
Liang, Xiao;
Liu, Li;
Du, Yanan;
Zhao, Yan;
Zhang, Feng

Publication type:

Article

Comparing enrichment analysis and machine learning for identifying gene properties that discriminate between gene classes.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 803, doi. 10.1093/bib/bbz028

By:

Fabris, Fabio;
Palmer, Daniel;
Magalhães, João Pedro de;
Freitas, Alex A

Publication type:

Article

Platform-independent approach for cancer detection from gene expression profiles of peripheral blood cells.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1006, doi. 10.1093/bib/bbz027

By:

Yang, Yadong;
Zhang, Tao;
Xiao, Rudan;
Hao, Xiaopeng;
Zhang, Huiqiang;
Qu, Hongzhu;
Xie, Bingbing;
Wang, Tao;
Fang, Xiangdong

Publication type:

Article

Validation strategies for target prediction methods.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 791, doi. 10.1093/bib/bbz026

By:

Mathai, Neann;
Chen, Ya;
Kirchmair, Johannes

Publication type:

Article

MicroRNAs and nervous system diseases: network insights and computational challenges.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 863, doi. 10.1093/bib/bbz032

By:

Wang, Jianjian;
Cao, Yuze;
Lu, Xiaoyu;
Wang, Tianfeng;
Li, Shuang;
Kong, Xiaotong;
Bo, Chunrui;
Li, Jie;
Wang, Xiaolong;
Ma, Heping;
Li, Lei;
Zhang, Huixue;
Ning, Shangwei;
Wang, Lihua

Publication type:

Article

Comparison of haplotype-based tests for detecting gene–environment interactions with rare variants.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 851, doi. 10.1093/bib/bbz031

By:

Papachristou, Charalampos;
Biswas, Swati

Publication type:

Article

Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 777, doi. 10.1093/bib/bbz025

By:

Wang, Ziye;
Wang, Ying;
Fuhrman, Jed A;
Sun, Fengzhu;
Zhu, Shanfeng

Publication type:

Article

Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 815, doi. 10.1093/bib/bbz029

By:

Liang, Zhongjie;
Verkhivker, Gennady M;
Hu, Guang

Publication type:

Article

Optimal selection of genetic variants for adjustment of population stratification in European association studies.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 753, doi. 10.1093/bib/bbz023

By:

Brinster, Regina;
Scherer, Dominique;
Bermejo, Justo Lorenzo

Publication type:

Article

Meta-GDBP: a high-level stacked regression model to improve anticancer drug response prediction.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 996, doi. 10.1093/bib/bbz022

By:

Su, Ran;
Liu, Xinyi;
Xiao, Guobao;
Wei, Leyi

Publication type:

Article

Corrigendum to: Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer data.

Published in:: Briefings in Bioinformatics, 2020, v. 21, n. 3, p. 1118, doi. 10.1093/bib/bby125
Publication type:: Article