Works matching IS 14675463 AND DT 2019 AND VI 20 AND IP 6

Results: 28

Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2150, doi. 10.1093/bib/bby077

By:

Li, Fuyi;
Wang, Yanan;
Li, Chen;
Marquez-Lago, Tatiana T;
Leier, André;
Rawlings, Neil D;
Haffari, Gholamreza;
Revote, Jerico;
Akutsu, Tatsuya;
Chou, Kuo-Chen;
Purcell, Anthony W;
Pike, Robert N;
Webb, Geoffrey I;
Smith, A Ian;
Lithgow, Trevor;
Daly, Roger J;
Whisstock, James C;
Song, Jiangning

Publication type:

Article

TRCirc: a resource for transcriptional regulation information of circRNAs.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2327, doi. 10.1093/bib/bby083

By:

Tang, Zhidong;
Li, Xuecang;
Zhao, Jianmei;
Qian, Fengcui;
Feng, Chenchen;
Li, Yanyu;
Zhang, Jian;
Jiang, Yong;
Yang, Yongsan;
Wang, Qiuyu;
Li, Chunquan

Publication type:

Article

Sequencing era methods for identifying signatures of selection in the genome.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1997, doi. 10.1093/bib/bby064

By:

Horscroft, Clare;
Ennis, Sarah;
Pengelly, Reuben J;
Sluckin, Timothy J;
Collins, Andrew

Publication type:

Article

A review of metrics measuring dissimilarity for rooted phylogenetic networks.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1972, doi. 10.1093/bib/bby062

By:

Wang, Juan;
Guo, Maozu

Publication type:

Article

Review and comparative assessment of similarity-based methods for prediction of drug–protein interactions in the druggable human proteome.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2066, doi. 10.1093/bib/bby069

By:

Wang, Chen;
Kurgan, Lukasz

Publication type:

Article

Revealing tumor heterogeneity of breast cancer by utilizing the linkage between somatic and germline mutations.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2306, doi. 10.1093/bib/bby084

By:

Zou, Meng;
Jin, Rui;
Au, Kin Fai

Publication type:

Article

Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2028, doi. 10.1093/bib/bby066

By:

Nguyen, Dai Hai;
Nguyen, Canh Hao;
Mamitsuka, Hiroshi

Publication type:

Article

Principals about principal components in statistical genetics.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2200, doi. 10.1093/bib/bby081

By:

Abegaz, Fentaw;
Chaichoompu, Kridsadakorn;
Génin, Emmanuelle;
Fardo, David W;
König, Inke R;
John, Jestinah M Mahachie;
Steen, Kristel Van

Publication type:

Article

LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2009, doi. 10.1093/bib/bby065

By:

Han, Siyu;
Liang, Yanchun;
Ma, Qin;
Xu, Yangyi;
Zhang, Yu;
Du, Wei;
Wang, Cankun;
Li, Ying

Publication type:

Article

Protein–peptide docking using CABS-dock and contact information.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2299, doi. 10.1093/bib/bby080

By:

Blaszczyk, Maciej;
Ciemny, Maciej Pawel;
Kolinski, Andrzej;
Kurcinski, Mateusz;
Kmiecik, Sebastian

Publication type:

Article

Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2267, doi. 10.1093/bib/bby089

By:

Chen, Zhen;
Liu, Xuhan;
Li, Fuyi;
Li, Chen;
Marquez-Lago, Tatiana;
Leier, André;
Akutsu, Tatsuya;
Webb, Geoffrey I;
Xu, Dakang;
Smith, Alexander Ian;
Li, Lei;
Chou, Kuo-Chen;
Song, Jiangning

Publication type:

Article

Interpretation of differential gene expression results of RNA-seq data: review and integration.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2044, doi. 10.1093/bib/bby067

By:

McDermaid, Adam;
Monier, Brandon;
Zhao, Jing;
Liu, Bingqiang;
Ma, Qin

Publication type:

Article

Quick approximation of threshold values for genome-wide association studies.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2217, doi. 10.1093/bib/bby082

By:

Hao, Zhiyu;
Jiang, Li;
Gao, Jin;
Ye, Jinhua;
Zhao, Jingli;
Li, Shuling;
Yang, Runqing

Publication type:

Article

Machine learning meets genome assembly.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2116, doi. 10.1093/bib/bby072

By:

Souza, Kleber Padovani de;
Setubal, João Carlos;
Carvalho, André Carlos Ponce de Leon F. de;
Oliveira, Guilherme;
Chateau, Annie;
Alves, Ronnie

Publication type:

Article

Impact of similarity metrics on single-cell RNA-seq data clustering.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2316, doi. 10.1093/bib/bby076

By:

Kim, Taiyun;
Chen, Irene Rui;
Lin, Yingxin;
Wang, Andy Yi-Yang;
Yang, Jean Yee Hwa;
Yang, Pengyi

Publication type:

Article

Polygenic approaches to detect gene–environment interactions when external information is unavailable.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2236, doi. 10.1093/bib/bby086

By:

Lin, Wan-Yu;
Huang, Ching-Chieh;
Liu, Yu-Li;
Tsai, Shih-Jen;
Kuo, Po-Hsiu

Publication type:

Article

PCA-based GRS analysis enhances the effectiveness for genetic correlation detection.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2291, doi. 10.1093/bib/bby075

By:

Zhao, Yan;
Ning, Yujie;
Zhang, Feng;
Ding, Miao;
Wen, Yan;
Shi, Liang;
Wang, Kunpeng;
Lu, Mengnan;
Sun, Jingyan;
Wu, Menglu;
Cheng, Bolun;
Ma, Mei;
Zhang, Lu;
Cheng, Shiqiang;
Shen, Hui;
Tian, Qing;
Guo, Xiong;
Deng, Hong-Wen

Publication type:

Article

Metabolomics technology and bioinformatics for precision medicine.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1957, doi. 10.1093/bib/bbx170

By:

Azad, Rajeev K;
Shulaev, Vladimir

Publication type:

Article

An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2224, doi. 10.1093/bib/bby085

By:

Mallik, Saurav;
Odom, Gabriel J;
Gao, Zhen;
Gomez, Lissette;
Chen, Xi;
Wang, Lily

Publication type:

Article

Control principles for complex biological networks.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2253, doi. 10.1093/bib/bby088

By:

Li, Min;
Gao, Hao;
Wang, Jianxin;
Wu, Fang-Xiang

Publication type:

Article

Computational resources associating diseases with genotypes, phenotypes and exposures.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2098, doi. 10.1093/bib/bby071

By:

Zhang, Wenliang;
Zhang, Haiyue;
Yang, Huan;
Li, Miaoxin;
Xie, Zhi;
Li, Weizhong

Publication type:

Article

Computational determination of gene age and characterization of evolutionary dynamics in human.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2141, doi. 10.1093/bib/bby074

By:

Yin, Hongyan;
Li, Mengwei;
Xia, Lin;
He, Chaozu;
Zhang, Zhang

Publication type:

Article

Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2185, doi. 10.1093/bib/bby079

By:

Zhang, Yanju;
Xie, Ruopeng;
Wang, Jiawei;
Leier, André;
Marquez-Lago, Tatiana T;
Akutsu, Tatsuya;
Webb, Geoffrey I;
Chou, Kuo-Chen;
Song, Jiangning

Publication type:

Article

Comprehensive comparative analysis of methods and software for identifying viral integrations.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2088, doi. 10.1093/bib/bby070

By:

Chen, Xun;
Kost, Jason;
Li, Dawei

Publication type:

Article

A comparative analysis of cell-type adjustment methods for epigenome-wide association studies based on simulated and real data sets.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2055, doi. 10.1093/bib/bby068

By:

Brägelmann, Johannes;
Bermejo, Justo Lorenzo

Publication type:

Article

A brief history of bioinformatics.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1981, doi. 10.1093/bib/bby063

By:

Gauthier, Jeff;
Vincent, Antony T;
Charette, Steve J;
Derome, Nicolas

Publication type:

Article

Breast cancer prognosis signature: linking risk stratification to disease subtypes.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2130, doi. 10.1093/bib/bby073

By:

Yu, Fulong;
Quan, Fei;
Xu, Jinyuan;
Zhang, Yan;
Xie, Yi;
Zhang, Jingyu;
Lan, Yujia;
Yuan, Huating;
Zhang, Hongyi;
Cheng, Shujun;
Xiao, Yun;
Li, Xia

Publication type:

Article

Binding site matching in rational drug design: algorithms and applications.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2167, doi. 10.1093/bib/bby078

By:

Naderi, Misagh;
Lemoine, Jeffrey Mitchell;
Govindaraj, Rajiv Gandhi;
Kana, Omar Zade;
Feinstein, Wei Pan;
Brylinski, Michal

Publication type:

Article