Works matching IS 14675463 AND DT 2019 AND VI 20 AND IP 3

Results: 24

A survey of software tools for microRNA discovery and characterization using RNA-seq.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 918, doi. 10.1093/bib/bbx148

By:

Bortolomeazzi, Michele;
Gaffo, Enrico;
Bortoluzzi, Stefania

Publication type:

Article

A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 1004, doi. 10.1093/bib/bbx159

By:

Ősz, Ágnes;
Pongor, Lőrinc Sándor;
Szirmai, Danuta;
Győrffy, Balázs

Publication type:

Article

RNA methylation and diseases: experimental results, databases, Web servers and computational models.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 896, doi. 10.1093/bib/bbx142

By:

Chen, Xing;
Sun, Ya-Zhou;
Liu, Hui;
Zhang, Lin;
Li, Jian-Qiang;
Meng, Jia

Publication type:

Article

A review of databases predicting the effects of SNPs in miRNA genes or miRNA-binding sites.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 1011, doi. 10.1093/bib/bbx155

By:

Fehlmann, Tobias;
Sahay, Shashwat;
Keller, Andreas;
Backes, Christina

Publication type:

Article

Resources and tools for the high-throughput, multi-omic study of intestinal microbiota.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 1032, doi. 10.1093/bib/bbx156

By:

Blanco-Míguez, Aitor;
Fdez-Riverola, Florentino;
Sánchez, Borja;
Lourenço, Anália

Publication type:

Article

Translational bioinformatics in mental health: open access data sources and computational biomarker discovery.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 842, doi. 10.1093/bib/bbx157

By:

Tenenbaum, Jessica D;
Bhuvaneshwar, Krithika;
Gagliardi, Jane P;
Hollis, Kate Fultz;
Jia, Peilin;
Ma, Liang;
Nagarajan, Radhakrishnan;
Rakesh, Gopalkumar;
Subbian, Vignesh;
Visweswaran, Shyam;
Zhao, Zhongming;
Rozenblit, Leon

Publication type:

Article

Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 806, doi. 10.1093/bib/bbx151

By:

Oulas, Anastasis;
Minadakis, George;
Zachariou, Margarita;
Sokratous, Kleitos;
Bourdakou, Marilena M;
Spyrou, George M

Publication type:

Article

Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 931, doi. 10.1093/bib/bbx164

By:

Wang, Jiawei;
Yang, Bingjiao;
An, Yi;
Marquez-Lago, Tatiana;
Leier, André;
Wilksch, Jonathan;
Hong, Qingyang;
Zhang, Yang;
Hayashida, Morihiro;
Akutsu, Tatsuya;
Webb, Geoffrey I;
Strugnell, Richard A;
Song, Jiangning;
Lithgow, Trevor

Publication type:

Article

Regulatory feedback loops bridge the human gene regulatory network and regulate carcinogenesis.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 976, doi. 10.1093/bib/bbx166

By:

Chen, Yun-Ru;
Huang, Hsuan-Cheng;
Lin, Chen-Ching

Publication type:

Article

Construction of a hierarchical gene regulatory network centered around a transcription factor.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 1021, doi. 10.1093/bib/bbx152

By:

Wei, Hairong

Publication type:

Article

Proteomics and phosphoproteomics in precision medicine: applications and challenges.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 767, doi. 10.1093/bib/bbx141

By:

Giudice, Girolamo;
Petsalaki, Evangelia

Publication type:

Article

Precision medicine needs pioneering clinical bioinformaticians.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 752, doi. 10.1093/bib/bbx144

By:

Gómez-López, Gonzalo;
Dopazo, Joaquín;
Cigudosa, Juan C;
Valencia, Alfonso;
Al-Shahrour, Fátima

Publication type:

Article

An evaluation of noncoding genome annotation tools through enrichment analysis of 15 genome-wide association studies.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 995, doi. 10.1093/bib/bbx131

By:

Li, Boyang;
Lu, Qiongshi;
Zhao, Hongyu

Publication type:

Article

Effect of normalization methods on the performance of supervised learning algorithms applied to HTSeq-FPKM-UQ data sets: 7SK RNA expression as a predictor of survival in patients with colon adenocarcinoma.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 985, doi. 10.1093/bib/bbx153

By:

Shahriyari, Leili

Publication type:

Article

Privacy-preserving techniques of genomic data—a survey.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 887, doi. 10.1093/bib/bbx139

By:

Aziz, Md Momin Al;
Sadat, Md Nazmus;
Alhadidi, Dima;
Wang, Shuang;
Jiang, Xiaoqian;
Brown, Cheryl L;
Mohammed, Noman

Publication type:

Article

Computer-aided biomarker discovery for precision medicine: data resources, models and applications.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 952, doi. 10.1093/bib/bbx158

By:

Lin, Yuxin;
Qian, Fuliang;
Shen, Li;
Chen, Feifei;
Chen, Jiajia;
Shen, Bairong

Publication type:

Article

Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 866, doi. 10.1093/bib/bbx147

By:

Jayakumar, Vasanthan;
Sakakibara, Yasubumi

Publication type:

Article

Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 789, doi. 10.1093/bib/bbx149

By:

Vitali, Francesca;
Li, Qike;
Schissler, A Grant;
Berghout, Joanne;
Kenost, Colleen;
Lussier, Yves A

Publication type:

Article

Computational profiling of the gut–brain axis: microflora dysbiosis insights to neurological disorders.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 825, doi. 10.1093/bib/bbx154

By:

Dovrolis, Nikolas;
Kolios, George;
Spyrou, George M;
Maroulakou, Ioanna

Publication type:

Article

Coloured Petri nets for multilevel, multiscale and multidimensional modelling of biological systems.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 877, doi. 10.1093/bib/bbx150

By:

Liu, Fei;
Heiner, Monika;
Gilbert, David

Publication type:

Article

Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 1057, doi. 10.1093/bib/bbx160

By:

Zanin, Massimiliano;
Chorbev, Ivan;
Stres, Blaz;
Stalidzans, Egils;
Vera, Julio;
Tieri, Paolo;
Castiglione, Filippo;
Groen, Derek;
Zheng, Huiru;
Baumbach, Jan;
Schmid, Johannes A;
Basilio, José;
Klimek, Peter;
Debeljak, Nataša;
Rozman, Damjana;
Schmidt, Harald H H W

Publication type:

Article

Bioinformatics for precision oncology.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 778, doi. 10.1093/bib/bbx143

By:

Singer, Jochen;
Irmisch, Anja;
Ruscheweyh, Hans-Joachim;
Singer, Franziska;
Toussaint, Nora C;
Levesque, Mitchell P;
Stekhoven, Daniel J;
Beerenwinkel, Niko

Publication type:

Article

CircView: a visualization and exploration tool for circular RNAs.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 745, doi. 10.1093/bib/bbx070

By:

Feng, Jing;
Xiang, Yu;
Xia, Siyu;
Liu, Huan;
Wang, Jun;
Ozguc, Fatma Muge;
Lei, Lijun;
Kong, Ruoshan;
Diao, Lixia;
He, Chunjiang;
Han, Leng

Publication type:

Article

Assessing the heterogeneity of in silico plasmid predictions based on whole-genome-sequenced clinical isolates.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 857, doi. 10.1093/bib/bbx162

By:

Laczny, Cedric C;
Galata, Valentina;
Plum, Achim;
Posch, Andreas E;
Keller, Andreas

Publication type:

Article