Works matching IS 14675463 AND DT 2018 AND VI 19 AND IP 5

Results: 29

Next-generation sequencing data analysis.

Published in:

2018

By:

Stadtländer, Christian T K-H

Publication type:

Book Review

A review of network-based approaches to drug repositioning.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 878, doi. 10.1093/bib/bbx017

By:

Shahreza, Maryam Lotfi;
Ghadiri, Nasser;
Mousavi, Sayed Rasoul;
Varshosaz, Jaleh;
Green, James R

Publication type:

Article

CASH: a constructing comprehensive splice site method for detecting alternative splicing events.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 905, doi. 10.1093/bib/bbx034

By:

Wu, Wenwu;
Zong, Jie;
Wei, Ning;
Cheng, Jian;
Zhou, Xuexia;
Cheng, Yuanming;
Chen, Dai;
Guo, Qinghua;
Zhang, Bo;
Feng, Ying

Publication type:

Article

Context-based retrieval of functional modules in protein–protein interaction networks.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 995, doi. 10.1093/bib/bbx029

By:

Dobay, Maria Pamela;
Stertz, Silke;
Delorenzi, Mauro

Publication type:

Article

Circular RNA identification based on multiple seed matching.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 803, doi. 10.1093/bib/bbx014

By:

Gao, Yuan;
Zhang, Jinyang;
Zhao, Fangqing

Publication type:

Article

Comprehensive assessment of flexible-ligand docking algorithms: current effectiveness and challenges.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 982, doi. 10.1093/bib/bbx030

By:

Huang, Sheng-You

Publication type:

Article

Comparison of the general co-expression landscapes between human and mouse.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 811, doi. 10.1093/bib/bbx024

By:

Liu, Di;
Zhao, Linna;
Chen, Yang;
Wang, Zhaoyang;
Xu, Jing;
Li, Ying;
Lei, Changgui;
Hu, Simeng;
Niu, Miaomiao;
Jiang, Yongshuai

Publication type:

Article

Comparative analysis of de novo assemblers for variation discovery in personal genomes.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 893, doi. 10.1093/bib/bbx037

By:

Tian, Shulan;
Yan, Huihuang;
Klee, Eric W;
Kalmbach, Michael;
Slager, Susan L

Publication type:

Article

Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 1022, doi. 10.1093/bib/bbx020

By:

Chavali, Arvind K;
Rhee, Seung Y

Publication type:

Article

Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 776, doi. 10.1093/bib/bbx008

By:

Evans, Ciaran;
Hardin, Johanna;
Stoebel, Daniel M

Publication type:

Article

Row versus column correlations: avoiding the ecological fallacy in RNA/protein expression studies.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 946, doi. 10.1093/bib/bbx021

By:

O'Brien, Jonathon J;
Gunawardena, Harsha P;
Qaqish, Bahjat F

Publication type:

Article

Review and comparative assessment of sequence-based predictors of protein-binding residues.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 821, doi. 10.1093/bib/bbx022

By:

Zhang, Jian;
Kurgan, Lukasz

Publication type:

Article

A survey of the approaches for identifying differential methylation using bisulfite sequencing data.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 737, doi. 10.1093/bib/bbx013

By:

Shafi, Adib;
Mitrea, Cristina;
Nguyen, Tin;
Draghici, Sorin

Publication type:

Article

Strategies for processing and quality control of Illumina genotyping arrays.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 765, doi. 10.1093/bib/bbx012

By:

Zhao, Shilin;
Jing, Wang;
Samuels, David C;
Sheng, Quanghu;
Shyr, Yu;
Guo, Yan

Publication type:

Article

Molecular dynamics recipes for genome research.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 853, doi. 10.1093/bib/bbx006

By:

Biagini, Tommaso;
Chillemi, Giovanni;
Mazzoccoli, Gianluigi;
Grottesi, Alessandro;
Fusilli, Caterina;
Capocefalo, Daniele;
Castellana, Stefano;
Vescovi, Angelo Luigi;
Mazza, Tommaso

Publication type:

Article

Individualized analysis of differentially expressed miRNAs with application to the identification of miRNAs deregulated commonly in lung cancer tissues.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 793, doi. 10.1093/bib/bbx015

By:

Yan, Haidan;
Cai, Hao;
Guan, Qingzhou;
He, Jun;
Zhang, Juan;
Guo, You;
Huang, Haiyan;
Li, Xiangyu;
Li, Yawei;
Gu, Yunyan

Publication type:

Article

Long noncoding RNA: a crosslink in biological regulatory network.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 930, doi. 10.1093/bib/bbx042

By:

Zhang, Yuwei;
Tao, Yang;
Liao, Qi

Publication type:

Article

Experimental design and data analysis of Ago-RIP-Seq experiments for the identification of microRNA targets.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 918, doi. 10.1093/bib/bbx032

By:

Tichy, Diana;
Pickl, Julia Maria Anna;
Benner, Axel;
Sültmann, Holger

Publication type:

Article

The anatomy of phenotype ontologies: principles, properties and applications.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 1008, doi. 10.1093/bib/bbx035

By:

Gkoutos, Georgios V;
Schofield, Paul N;
Hoehndorf, Robert

Publication type:

Article

Identification of differentially expressed peptides in high-throughput proteomics data.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 971, doi. 10.1093/bib/bbx031

By:

Ooijen, Michiel P van;
Jong, Victor L;
Eijkemans, Marinus J C;
Heck, Albert J R;
Andeweg, Arno C;
Binai, Nadine A;
van den Ham, Henk-Jan

Publication type:

Article

GWAS summary-based pathway analysis correcting for the genetic confounding impact of environmental exposures.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 725, doi. 10.1093/bib/bbx025

By:

Fan, Qianrui;
Zhang, Feng;
Wang, Wenyu;
Xu, Jiawen;
Hao, Jingcan;
He, Awen;
Wen, Yan;
Li, Ping;
Liang, Xiao;
Du, Yanan

Publication type:

Article

Genome-wide analysis reveals that exon methylation facilitates its selective usage in the human transcriptome.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 754, doi. 10.1093/bib/bbx019

By:

Li, Shengli;
Zhang, Jiwei;
Huang, Shenglin;
He, Xianghuo

Publication type:

Article

Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 954, doi. 10.1093/bib/bbx033

By:

Muth, Thilo;
Renard, Bernhard Y

Publication type:

Article

Improving data workflow systems with cloud services and use of open data for bioinformatics research.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 1035, doi. 10.1093/bib/bbx039

By:

Karim, Md Rezaul;
Michel, Audrey;
Zappa, Achille;
Baranov, Pavel;
Sahay, Ratnesh;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Dynamic modeling and network approaches for omics time course data: overview of computational approaches and applications.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 1051, doi. 10.1093/bib/bbx036

By:

Liang, Yulan;
Kelemen, Arpad

Publication type:

Article

DNA copy number profiling using single-cell sequencing.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 731, doi. 10.1093/bib/bbx004

By:

Wang, Xuefeng;
Chen, Hao;
Zhang, Nancy R

Publication type:

Article

Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 838, doi. 10.1093/bib/bbx018

By:

Wang, Huilin;
Feng, Liubin;
Webb, Geoffrey I;
Kurgan, Lukasz;
Song, Jiangning;
Lin, Donghai

Publication type:

Article

Detection of drug–drug interactions through data mining studies using clinical sources, scientific literature and social media.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 863, doi. 10.1093/bib/bbx010

By:

Vilar, Santiago;
Friedman, Carol;
Hripcsak, George

Publication type:

Article

An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 1069, doi. 10.1093/bib/bbx026

By:

Liu, Bingqiang;
Yang, Jinyu;
Li, Yang;
McDermaid, Adam;
Ma, Qin

Publication type:

Article