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The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa390
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ChemGenerator: a web server for generating potential ligands for specific targets.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa407
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A deep learning approach for filtering structural variants in short read sequencing data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa370
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Dynamics of transcriptional and post-transcriptional regulation.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa389
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Classification and characterization of multigene family proteins of African swine fever viruses.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa380
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CyanoPATH: a knowledgebase of genome-scale functional repertoire for toxic cyanobacterial blooms.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa375
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idenPC-CAP: Identify protein complexes from weighted RNA-protein heterogeneous interaction networks using co-assemble partner relation.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa372
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Machine learning-based integrative analysis of methylome and transcriptome identifies novel prognostic DNA methylation signature in uveal melanoma.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa371
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Identifying age-specific gene signatures of the human cerebral cortex with joint analysis of transcriptomes and functional connectomes.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa388
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Pyfastx: a robust Python package for fast random access to sequences from plain and gzipped FASTA/Q files.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa368
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ITP-Pred: an interpretable method for predicting, therapeutic peptides with fused features low-dimension representation.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa367
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Deep forest ensemble learning for classification of alignments of non-coding RNA sequences based on multi-view structure representations.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa354
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Computational drug repositioning based on the relationships between substructure–indication.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa348
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Coupled co-clustering-based unsupervised transfer learning for the integrative analysis of single-cell genomic data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa347
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Topological network measures for drug repositioning.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa357
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Improving gene network inference with graph wavelets and making insights about ageing-associated regulatory changes in lungs.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa360
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Simulation of African and non-African low and high coverage whole genome sequence data to assess variant calling approaches.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa366
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Deep inverse reinforcement learning for structural evolution of small molecules.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa364
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Automation in signal management in pharmacovigilance—an insight.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa363
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A genome-wide association study to identify candidate genes for erectile dysfunction.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa338
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Encyclopedia of tools for the analysis of miRNA isoforms.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa346
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DeepYY1: a deep learning approach to identify YY1-mediated chromatin loops.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa356
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PharmKG: a dedicated knowledge graph benchmark for bomedical data mining.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa344
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Pathogenic gene prediction based on network embedding.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa353
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Novel ChIP-seq simulating program with superior versatility: isChIP.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa352
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NGPINT: a next-generation protein–protein interaction software.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa351
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A comprehensive survey on computational methods of non-coding RNA and disease association prediction.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa350
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Understanding the unimodal distributions of cancer occurrence rates: it takes two factors for a cancer to occur.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa349
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Target shortage and less explored multiple targeting: hurdles in the development of novel antifungals but overcome/addressed effectively through structural bioinformatics.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa343
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FireProt<sup>ASR</sup>: A Web Server for Fully Automated Ancestral Sequence Reconstruction.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa337
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Highly accurate diagnosis of papillary thyroid carcinomas based on personalized pathways coupled with machine learning.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa336
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Pan-cancer analysis of NLRP3 inflammasome with potential implications in prognosis and immunotherapy in human cancer.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa345
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FEATS: feature selection-based clustering of single-cell RNA-seq data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa306
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FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa339
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Dppa2/4 as a trigger of signaling pathways to promote zygote genome activation by binding to CG-rich region.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa342
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InstaDock: A single-click graphical user interface for molecular docking-based virtual high-throughput screening.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa279
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A fine-scale map of genome-wide recombination in divergent Escherichia coli population.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa335
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C-C Chemokine receptor-like 2 (CCRL2) acts as coreceptor for human immunodeficiency virus-2.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa333
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Optimized combination methods for exploring and verifying disease-resistant transcription factors in melon.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa326
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LiBis: an ultrasensitive alignment augmentation for low-input bisulfite sequencing.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa332
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ColorCells: a database of expression, classification and functions of lncRNAs in single cells.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa325
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Comparative viromes of Culicoides and mosquitoes reveal their consistency and diversity in viral profiles.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa323
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A systematic analysis of miRNA markers and classification algorithms for forensic body fluid identification.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa324
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Do we need different machine learning algorithms for QSAR modeling? A comprehensive assessment of 16 machine learning algorithms on 14 QSAR data sets.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa321
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Computational methods for annotation of plant regulatory non-coding RNAs using RNA-seq.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa322
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PERHAPS: Paired-End short Reads-based HAPlotyping from next-generation Sequencing data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa320
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Unveiling the immune infiltrate modulation in cancer and response to immunotherapy by MIXTURE—an enhanced deconvolution method.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa317
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Prediction of protein–carbohydrate complex binding affinity using structural features.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa319
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Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa318
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scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa316
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