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Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2150, doi. 10.1093/bib/bby077
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TRCirc: a resource for transcriptional regulation information of circRNAs.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2327, doi. 10.1093/bib/bby083
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A review of metrics measuring dissimilarity for rooted phylogenetic networks.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1972, doi. 10.1093/bib/bby062
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Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2028, doi. 10.1093/bib/bby066
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Binding site matching in rational drug design: algorithms and applications.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2167, doi. 10.1093/bib/bby078
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Polygenic approaches to detect gene–environment interactions when external information is unavailable.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2236, doi. 10.1093/bib/bby086
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Sequencing era methods for identifying signatures of selection in the genome.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1997, doi. 10.1093/bib/bby064
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A brief history of bioinformatics.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1981, doi. 10.1093/bib/bby063
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Revealing tumor heterogeneity of breast cancer by utilizing the linkage between somatic and germline mutations.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2306, doi. 10.1093/bib/bby084
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Review and comparative assessment of similarity-based methods for prediction of drug–protein interactions in the druggable human proteome.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2066, doi. 10.1093/bib/bby069
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PCA-based GRS analysis enhances the effectiveness for genetic correlation detection.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2291, doi. 10.1093/bib/bby075
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Metabolomics technology and bioinformatics for precision medicine.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1957, doi. 10.1093/bib/bbx170
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Quick approximation of threshold values for genome-wide association studies.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2217, doi. 10.1093/bib/bby082
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Protein–peptide docking using CABS-dock and contact information.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2299, doi. 10.1093/bib/bby080
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Principals about principal components in statistical genetics.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2200, doi. 10.1093/bib/bby081
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Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1878, doi. 10.1093/bib/bby061
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Corrigendum to: How trees allocate carbon for optimal growth: insight from a game-theoretic model.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1956, doi. 10.1093/bib/bby060
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Machine learning meets genome assembly.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2116, doi. 10.1093/bib/bby072
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LncFinder: an integrated platform for long non-coding RNA identification utilizing sequence intrinsic composition, structural information and physicochemical property.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2009, doi. 10.1093/bib/bby065
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Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2267, doi. 10.1093/bib/bby089
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Interpretation of differential gene expression results of RNA-seq data: review and integration.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2044, doi. 10.1093/bib/bby067
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Impact of similarity metrics on single-cell RNA-seq data clustering.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2316, doi. 10.1093/bib/bby076
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Control principles for complex biological networks.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2253, doi. 10.1093/bib/bby088
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An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2224, doi. 10.1093/bib/bby085
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Computational resources associating diseases with genotypes, phenotypes and exposures.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2098, doi. 10.1093/bib/bby071
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Computational analysis and prediction of lysine malonylation sites by exploiting informative features in an integrative machine-learning framework.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2185, doi. 10.1093/bib/bby079
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Computational determination of gene age and characterization of evolutionary dynamics in human.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2141, doi. 10.1093/bib/bby074
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Comprehensive comparative analysis of methods and software for identifying viral integrations.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2088, doi. 10.1093/bib/bby070
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Breast cancer prognosis signature: linking risk stratification to disease subtypes.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2130, doi. 10.1093/bib/bby073
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A comparative analysis of cell-type adjustment methods for epigenome-wide association studies based on simulated and real data sets.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 2055, doi. 10.1093/bib/bby068
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dbCID: a manually curated resource for exploring the driver indels in human cancer.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1925, doi. 10.1093/bib/bby059
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An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F<sub>2</sub>.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1913, doi. 10.1093/bib/bby058
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A practical guide for DNase-seq data analysis: from data management to common applications.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1865, doi. 10.1093/bib/bby057
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ATAC-pipe: general analysis of genome-wide chromatin accessibility.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1934, doi. 10.1093/bib/bby056
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The small peptide world in long noncoding RNAs.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1853, doi. 10.1093/bib/bby055
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Upstream analysis of alternative splicing: a review of computational approaches to predict context-dependent splicing factors.
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- Briefings in Bioinformatics, 2019, p. 1358, doi. 10.1093/bib/bby005
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Function determinants of TET proteins: the arrangements of sequence motifs with specific codes.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1826, doi. 10.1093/bib/bby053
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Survey of miRNA-miRNA cooperative regulation principles across cancer types.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1621, doi. 10.1093/bib/bby038
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Trends in the development of miRNA bioinformatics tools.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1836, doi. 10.1093/bib/bby054
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Predicting novel microRNA: a comprehensive comparison of machine learning approaches.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1607, doi. 10.1093/bib/bby037
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Comprehensive analysis of Helicobacter pylori infection-associated diseases based on miRNA-mRNA interaction network.
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- Briefings in Bioinformatics, 2019, p. 1492, doi. 10.1093/bib/bby018
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Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes.
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- Briefings in Bioinformatics, 2019, p. 1590, doi. 10.1093/bib/bby022
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Landscape of the long non-coding RNA transcriptome in human heart.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1812, doi. 10.1093/bib/bby052
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Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1795, doi. 10.1093/bib/bby051
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Versatile interactions and bioinformatics analysis of noncoding RNAs.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1781, doi. 10.1093/bib/bby050
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Disease classification: from phenotypic similarity to integrative genomics and beyond.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1769, doi. 10.1093/bib/bby049
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Connectome verification: inter-rater and connection reliability of tract-tracing-based intrinsic hypothalamic connectivity.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1944, doi. 10.1093/bib/bby048
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Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1754, doi. 10.1093/bib/bby047
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Evaluating the consistency of large-scale pharmacogenomic studies.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1734, doi. 10.1093/bib/bby046
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Physiological RNA dynamics in RNA-Seq analysis.
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- Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1725, doi. 10.1093/bib/bby045
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