Works in Environmental Microbiology, 2016, Vol 18, Issue 12

Results: 75

Nutrient pulses driven by internal solitary waves enhance heterotrophic bacterial growth in the South China Sea.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4312, doi. 10.1111/1462-2920.13273

By:

Chen, Tzong ‐ Yueh;
Tai, Jen ‐ Hua;
Ko, Chia ‐ Ying;
Hsieh, Chih ‐ hao;
Chen, Chung ‐ Chi;
Jiao, Nianzhi;
Liu, Hong ‐ Bin;
Shiah, Fuh ‐ Kwo

Publication type:

Article

Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaea.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4324, doi. 10.1111/1462-2920.13289

By:

Zhu, Chun;
Wakeham, Stuart G.;
Elling, Felix J.;
Basse, Andreas;
Mollenhauer, Gesine;
Versteegh, Gerard J. M.;
Könneke, Martin;
Hinrichs, Kai ‐ Uwe

Publication type:

Article

New biosynthetic pathway for pink pigments from uncultured oceanic viruses.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4337, doi. 10.1111/1462-2920.13290

By:

Ledermann, Benjamin;
Béjà, Oded;
Frankenberg ‐ Dinkel, Nicole

Publication type:

Article

Anthropogenic effects on bacterial diversity and function along a river-to-estuary gradient in Northwest Greece revealed by metagenomics.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4640, doi. 10.1111/1462-2920.13303

By:

Meziti, Alexandra;
Tsementzi, Despina;
Ar. Kormas, Konstantinos;
Karayanni, Hera;
Konstantinidis, Konstantinos T.

Publication type:

Article

Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4348, doi. 10.1111/1462-2920.13304

By:

Meier, Dimitri V.;
Bach, Wolfgang;
Girguis, Peter R.;
Gruber ‐ Vodicka, Harald R.;
Reeves, Eoghan P.;
Richter, Michael;
Vidoudez, Charles;
Amann, Rudolf;
Meyerdierks, Anke

Publication type:

Article

Genetic and functional characterization of a novel meta-pathway for degradation of naringenin in Herbaspirillum seropedicae SmR1.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4653, doi. 10.1111/1462-2920.13313

By:

Maria Marin, Anelis;
de la Torre, Jésus;
Ricardo Marques Oliveira, Alfredo;
Barison, Andersson;
Satie Chubatsu, Leda;
Adele Monteiro, Rose;
de Oliveira Pedrosa, Fabio;
Maltempi de Souza, Emanuel;
Wassem, Roseli;
Duque, Estrella;
Ramos, Juan ‐ Luis

Publication type:

Article

Response of bacterial communities from California coastal waters to alginate particles and an alginolytic Alteromonas macleodii strain.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4369, doi. 10.1111/1462-2920.13314

By:

Mitulla, Maximilian;
Dinasquet, Julie;
Guillemette, Ryan;
Simon, Meinhard;
Azam, Farooq;
Wietz, Matthias

Publication type:

Article

Impact of an intense water column mixing (0-1500 m) on prokaryotic diversity and activities during an open-ocean convection event in the NW Mediterranean Sea.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4378, doi. 10.1111/1462-2920.13324

By:

Severin, Tatiana;
Sauret, Caroline;
Boutrif, Mehdi;
Duhaut, Thomas;
Kessouri, Fayçal;
Oriol, Louise;
Caparros, Jocelyne;
Pujo ‐ Pay, Mireille;
Durrieu de Madron, Xavier;
Garel, Marc;
Tamburini, Christian;
Conan, Pascal;
Ghiglione, Jean ‐ François

Publication type:

Article

Partitioning of functional and taxonomic diversity in surface-associated microbial communities.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4391, doi. 10.1111/1462-2920.13325

By:

Roth ‐ Schulze, Alexandra J.;
Zozaya ‐ Valdés, Enrique;
Steinberg, Peter D.;
Thomas, Torsten

Publication type:

Article

Tree species, spatial heterogeneity, and seasonality drive soil fungal abundance, richness, and composition in Neotropical rainforests.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4662, doi. 10.1111/1462-2920.13342

By:

Kivlin, Stephanie N.;
Hawkes, Christine V.

Publication type:

Article

Metabolome-mediated biocryomorphic evolution promotes carbon fixation in Greenlandic cryoconite holes.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4674, doi. 10.1111/1462-2920.13349

By:

Cook, Joseph M.;
Edwards, Arwyn;
Bulling, Mark;
Mur, Luis A. J.;
Cook, Sophie;
Gokul, Jarishma K.;
Cameron, Karen A.;
Sweet, Michael;
Irvine ‐ Fynn, Tristram D. L.

Publication type:

Article

Functional analysis of Agaricus bisporus serine proteinase 1 reveals roles in utilization of humic rich substrates and adaptation to the leaf-litter ecological niche.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4687, doi. 10.1111/1462-2920.13350

By:

Heneghan, Mary N.;
Burns, Claire;
Costa, Ana M. S. B.;
Burton, Kerry S.;
Challen, Michael P.;
Bailey, Andy M.;
Foster, Gary D.

Publication type:

Article

Type II NADH:quinone oxidoreductase family: phylogenetic distribution, structural diversity and evolutionary divergences.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4697, doi. 10.1111/1462-2920.13352

By:

Marreiros, Bruno C.;
Sena, Filipa V.;
Sousa, Filipe M.;
Batista, Ana P.;
Pereira, Manuela M.

Publication type:

Article

Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4710, doi. 10.1111/1462-2920.13360

By:

Alfaro, Manuel;
Castanera, Raúl;
Lavín, José L.;
Grigoriev, Igor V.;
Oguiza, José A.;
Ramírez, Lucía;
Pisabarro, Antonio G.

Publication type:

Article

Insights into the biodiversity of the gut microbiota of broiler chickens.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4727, doi. 10.1111/1462-2920.13363

By:

Mancabelli, Leonardo;
Ferrario, Chiara;
Milani, Christian;
Mangifesta, Marta;
Turroni, Francesca;
Duranti, Sabrina;
Lugli, Gabriele Andrea;
Viappiani, Alice;
Ossiprandi, Maria Cristina;
van Sinderen, Douwe;
Ventura, Marco

Publication type:

Article

Environmental filtering decreases with fish development for the assembly of gut microbiota.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4739, doi. 10.1111/1462-2920.13365

By:

Yan, Qingyun;
Li, Jinjin;
Yu, Yuhe;
Wang, Jianjun;
He, Zhili;
Van Nostrand, Joy D.;
Kempher, Megan L.;
Wu, Liyou;
Wang, Yaping;
Liao, Lanjie;
Li, Xinghao;
Wu, Shu;
Ni, Jiajia;
Wang, Chun;
Zhou, Jizhong

Publication type:

Article

The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4755, doi. 10.1111/1462-2920.13366

By:

Jay, Zackary J.;
Beam, Jacob P.;
Kozubal, Mark A.;
Jennings, Ryan deM.;
Rusch, Douglas B.;
Inskeep, William P.

Publication type:

Article

Genome-wide identification and characterization of macrolide glycosyltransferases from a marine-derived Bacillus strain and their phylogenetic distribution.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4770, doi. 10.1111/1462-2920.13367

By:

Liu, Yang;
Qin, Wen;
Liu, Quanquan;
Zhang, Jun;
Li, Huayue;
Xu, Shanshan;
Ren, Pengfei;
Tian, Li;
Li, Wenli

Publication type:

Article

Phosphate and ATP uptake by lake bacteria: does taxonomical identity matter?

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4782, doi. 10.1111/1462-2920.13368

By:

Rofner, Carina;
Sommaruga, Ruben;
Teresa Pérez, María

Publication type:

Article

Competitive advantage and higher fitness in native populations of genetically structured planktonic diatoms.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4403, doi. 10.1111/1462-2920.13372

By:

Sildever, Sirje;
Sefbom, Josefin;
Lips, Inga;
Godhe, Anna

Publication type:

Article

Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or quality.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4412, doi. 10.1111/1462-2920.13373

By:

Garrido, José L.;
Brunet, Christophe;
Rodríguez, Francisco

Publication type:

Article

A multiproxy approach to evaluate biocidal treatments on biodeteriorated majolica glazed tiles.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4794, doi. 10.1111/1462-2920.13380

By:

Coutinho, M. L.;
Miller, A. Z.;
Martin ‐ Sanchez, P. M.;
Mirão, J.;
Gomez ‐ Bolea, A.;
Machado ‐ Moreira, B.;
Cerqueira ‐ Alves, L.;
Jurado, V.;
Saiz ‐ Jimenez, C.;
Lima, A.;
Phillips, A. J. L.;
Pina, F.;
Macedo, M. F.

Publication type:

Article

Native plasmids restrict growth of Phaeobacter inhibens DSM 17395: Energetic costs of plasmids assessed by quantitative physiological analyses.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4817, doi. 10.1111/1462-2920.13381

By:

Trautwein, Kathleen;
Will, Sabine Eva;
Hulsch, Reiner;
Maschmann, Uwe;
Wiegmann, Katharina;
Hensler, Michael;
Michael, Victoria;
Ruppersberg, Hanna;
Wünsch, Daniel;
Feenders, Christoph;
Neumann ‐ Schaal, Meina;
Kaltenhäuser, Sabine;
Ulbrich, Marcus;
Schmidt ‐ Hohagen, Kerstin;
Blasius, Bernd;
Petersen, Jörn;
Schomburg, Dietmar;
Rabus, Ralf

Publication type:

Article

A transposon present in specific strains of Bacillus subtilis negatively affects nutrient- and dodecylamine-induced spore germination.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4830, doi. 10.1111/1462-2920.13386

By:

Krawczyk, Antonina O.;
Berendsen, Erwin M.;
de Jong, Anne;
Boekhorst, Jos;
Wells ‐ Bennik, Marjon H. J.;
Kuipers, Oscar P.;
Eijlander, Robyn T.

Publication type:

Article

Culture-independent characterization of novel psychrophilic magnetotactic cocci from Antarctic marine sediments.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4426, doi. 10.1111/1462-2920.13388

By:

Abreu, Fernanda;
Carolina, Ana;
Araujo, V.;
Leão, Pedro;
Silva, Karen Tavares;
Carvalho, Fabíola Marques de;
Cunha, Oberdan de Lima;
Almeida, Luiz Gonzaga;
Geurink, Corey;
Farina, Marcos;
Rodelli, Daniel;
Jovane, Luigi;
Pellizari, Vivian H.;
Vasconcelos, Ana Tereza de;
Bazylinski, Dennis A.;
Lins, Ulysses

Publication type:

Article

Prediction of bacterial associations with plants using a supervised machine-learning approach.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4847, doi. 10.1111/1462-2920.13389

By:

Martínez ‐ García, Pedro Manuel;
López ‐ Solanilla, Emilia;
Ramos, Cayo;
Rodríguez ‐ Palenzuela, Pablo

Publication type:

Article

Species-sorting and mass-transfer paradigms control managed natural metacommunities.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4862, doi. 10.1111/1462-2920.13402

By:

Günther, Susanne;
Faust, Karoline;
Schumann, Joachim;
Harms, Hauke;
Raes, Jeroen;
Müller, Susann

Publication type:

Article

Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4442, doi. 10.1111/1462-2920.13407

By:

Brindefalk, Björn;
Ekman, Martin;
Ininbergs, Karolina;
Dupont, Christopher L.;
Yooseph, Shibu;
Pinhassi, Jarone;
Bergman, Birgitta

Publication type:

Article

Expanded insecticide catabolic activity gained by a single nucleotide substitution in a bacterial carbamate hydrolase gene.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4878, doi. 10.1111/1462-2920.13409

By:

Öztürk, Başak;
Ghequire, Maarten;
Nguyen, Thi Phi Oanh;
De Mot, René;
Wattiez, Ruddy;
Springael, Dirk

Publication type:

Article

Comparative genomic analysis of isoproturon-mineralizing sphingomonads reveals the isoproturon catabolic mechanism.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4888, doi. 10.1111/1462-2920.13413

By:

Yan, Xin;
Gu, Tao;
Yi, Zhongquan;
Huang, Junwei;
Liu, Xiaowei;
Zhang, Ji;
Xu, Xihui;
Xin, Zhihong;
Hong, Qing;
He, Jian;
Spain, Jim C.;
Li, Shunpeng;
Jiang, Jiandong

Publication type:

Article

Microbial community diversity, structure and assembly across oxygen gradients in meromictic marine lakes, Palau.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4907, doi. 10.1111/1462-2920.13416

By:

Meyerhof, Matthew S.;
Wilson, Jesse M.;
Dawson, Michael N.;
Michael Beman, J.

Publication type:

Article

Conversion of the sensor kinase DcuS of Escherichia coli of the DcuB/DcuS sensor complex to the C4-dicarboxylate responsive form by the transporter DcuB.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4920, doi. 10.1111/1462-2920.13418

By:

Wörner, Sebastian;
Strecker, Alexander;
Monzel, Christian;
Zeltner, Matthias;
Witan, Julian;
Ebert ‐ Jung, Andrea;
Unden, Gottfried

Publication type:

Article

Latitude delineates patterns of biogeography in terrestrial Streptomyces.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4931, doi. 10.1111/1462-2920.13420

By:

Choudoir, Mallory J.;
Doroghazi, James R.;
Buckley, Daniel H.

Publication type:

Article

Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4990, doi. 10.1111/1462-2920.13456

By:

Saghaï, Aurélien;
Zivanovic, Yvan;
Moreira, David;
Benzerara, Karim;
Bertolino, Paola;
Ragon, Marie;
Tavera, Rosaluz;
López ‐ Archilla, Ana Isabel;
López ‐ García, Purificación

Publication type:

Article

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4456, doi. 10.1111/1462-2920.13429

By:

Bennke, Christin M.;
Krüger, Karen;
Kappelmann, Lennart;
Huang, Sixing;
Gobet, Angélique;
Schüler, Margarete;
Barbe, Valérie;
Fuchs, Bernhard M.;
Michel, Gurvan;
Teeling, Hanno;
Amann, Rudolf I.

Publication type:

Article

Spatial and temporal variability of aerobic anoxygenic photoheterotrophic bacteria along the east coast of Australia.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4485, doi. 10.1111/1462-2920.13436

By:

Bibiloni ‐ Isaksson, Jaime;
Seymour, Justin R.;
Ingleton, Tim;
van de Kamp, Jodie;
Bodrossy, Levente;
Brown, Mark V.

Publication type:

Article

Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4946, doi. 10.1111/1462-2920.13444

By:

Hunt, Kristopher A.;
Jennings, Ryan deM.;
Inskeep, William P.;
Carlson, Ross P.

Publication type:

Article

Evidence of a bacterial core in the stored products pest Plodia interpunctella: the influence of different diets.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4961, doi. 10.1111/1462-2920.13450

By:

Montagna, Matteo;
Mereghetti, Valeria;
Gargari, Giorgio;
Guglielmetti, Simone;
Faoro, Franco;
Lozzia, Giuseppe;
Locatelli, Daria;
Limonta, Lidia

Publication type:

Article

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4974, doi. 10.1111/1462-2920.13455

By:

Martino, Maria Elena;
Bayjanov, Jumamurat R.;
Caffrey, Brian E.;
Wels, Michiel;
Joncour, Pauline;
Hughes, Sandrine;
Gillet, Benjamin;
Kleerebezem, Michiel;
van Hijum, Sacha A.F.T.;
Leulier, François

Publication type:

Article

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4471, doi. 10.1111/1462-2920.13433

By:

Matos, Marina N.;
Lozada, Mariana;
Anselmino, Luciano E.;
Musumeci, Matías A.;
Henrissat, Bernard;
Jansson, Janet K.;
Mac Cormack, Walter P.;
Carroll, JoLynn;
Sjöling, Sara;
Lundgren, Leif;
Dionisi, Hebe M.

Publication type:

Article

Identification of an iron permease, cFTR1, in cyanobacteria involved in the iron reduction/re-oxidation uptake pathway.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5005, doi. 10.1111/1462-2920.13464

By:

Xu, Ning;
Qiu, Guo ‐ Wei;
Lou, Wen ‐ Jing;
Li, Zheng ‐ Ke;
Jiang, Hai ‐ Bo;
Price, Neil M.;
Qiu, Bao ‐ Sheng

Publication type:

Article

The ICE XTD of Azoarcus sp. CIB, an integrative and conjugative element with aerobic and anaerobic catabolic properties.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5018, doi. 10.1111/1462-2920.13465

By:

Zamarro, María Teresa;
Martín ‐ Moldes, Zaira;
Díaz, Eduardo

Publication type:

Article

Toxin-Antitoxin systems eliminate defective cells and preserve symmetry in B acillus subtilis biofilms.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5032, doi. 10.1111/1462-2920.13471

By:

Bloom ‐ Ackermann, Zohar;
Steinberg, Nitai;
Rosenberg, Gili;
Oppenheimer ‐ Shaanan, Yaara;
Pollack, Dan;
Ely, Shir;
Storzi, Nimrod;
Levy, Asaf;
Kolodkin ‐ Gal, Ilana

Publication type:

Article

Soil compartment is a major determinant of the impact of simulated rainfall on desert microbiota.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5048, doi. 10.1111/1462-2920.13474

By:

Aslam, Shazia N.;
Dumbrell, Alex J.;
Sabir, Jamal S.;
Mutwakil, Mohammed H. Z.;
Baeshen, Mohammed M. N.;
Abo ‐ Aba, Salah E. M.;
Clark, Dave R.;
Yates, Steven A.;
Baeshen, Nabih A.;
Underwood, Graham J. C.;
McGenity, Terry J.

Publication type:

Article

High turnover rates of aerobic anoxygenic phototrophs in European freshwater lakes.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5063, doi. 10.1111/1462-2920.13475

By:

Cepáková, Zuzana;
Hrouzek, Pavel;
Žišková, Eva;
Nuyanzina ‐ Boldareva, Ekaterina;
Šorf, Michal;
Kozlíková ‐ Zapomělová, Eliška;
Salka, Ivette;
Grossart, Hans ‐ Peter;
Koblížek, Michal

Publication type:

Article

Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane-related proteins.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5072, doi. 10.1111/1462-2920.13477

By:

Jaffe, Alexander L.;
Corel, Eduardo;
Pathmanathan, Jananan Sylvestre;
Lopez, Philippe;
Bapteste, Eric

Publication type:

Article

Analysis of Gambierdiscus transcriptome data supports ancient origins of mixotrophic pathways in dinoflagellates.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4501, doi. 10.1111/1462-2920.13478

By:

Price, Dana C.;
Farinholt, Natalie;
Gates, Colin;
Shumaker, Alexander;
Wagner, Nicole E.;
Bienfang, Paul;
Bhattacharya, Debashish

Publication type:

Article

Enhanced viral activity and dark CO2 fixation rates under oxygen depletion: the case study of the marine Lake Rogoznica.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4511, doi. 10.1111/1462-2920.13484

By:

Rastelli, Eugenio;
Corinaldesi, Cinzia;
Petani, Bruna;
Dell'Anno, Antonio;
Ciglenečki, Irena;
Danovaro, Roberto

Publication type:

Article

New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4523, doi. 10.1111/1462-2920.13485

By:

Vekeman, Bram;
Kerckhof, Frederiek ‐ Maarten;
Cremers, Geert;
de Vos, Paul;
Vandamme, Peter;
Boon, Nico;
Op den Camp, Huub J.M.;
Heylen, Kim

Publication type:

Article

Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 5082, doi. 10.1111/1462-2920.13491

By:

Ji, Yang;
Angel, Roey;
Klose, Melanie;
Claus, Peter;
Marotta, Humberto;
Pinho, Luana;
Enrich ‐ Prast, Alex;
Conrad, Ralf

Publication type:

Article