Works matching IS 1438793X AND DT 2025

Results: 169

A novel PADI6 splice-site variant induces non-canonical GC-AG splicing and embryonic arrest in humans.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01689-9

By:

Hu, Huiling;
Sun, Jiaqi;
Meng, Fei;
Gong, Fei;
Lin, Ge;
Leng, Lizhi;
Zheng, Wei

Publication type:

Article

Prognostic and therapeutic implications related to glycosylation profiles of cancer-associated fibroblasts in colorectal cancer: insights from single-cell and bulk transcriptomics.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01675-1

By:

Chen, Keji;
Huang, Huixia;
Hu, Zijuan;
Zhu, Yifei;
Yao, Yanxi;
Wang, Yaxian;
Chen, Jiayu;
Li, Yuxue;
Li, Dawei;
Wei, Ping

Publication type:

Article

Transcription factor BrEFM negatively regulates flowering time in Chinese cabbage.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01673-3

By:

Guo, Xinlei;
Zhang, Yuanyuan;
Feng, Chunyang;
Qin, Yunduan;
Li, Shuai;
Xu, Yu;
Shen, Changwei;
Yuan, Jingping

Publication type:

Article

Comparative pan-genome analysis of Huperzia and Phlegmariurus and transcriptomics reveals thermal adaptation in Huperzia.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01680-4

By:

Li, Muzi;
Wu, Yazhu;
Li, Haibo;
Zhang, Zhongnian;
Qin, Rui;
Wen, Jiahao;
Xu, Yeqin;
Bao, Chengcheng;
Wang, Dekai

Publication type:

Article

Whole-Genome analysis of Bacillus subtilis MBBL2 genomic characterization and comparative genomics.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01684-0

By:

Sohail, Hajra;
Naveed, Muhammad;
Aziz, Tariq;
El Hadi Mohamed, Rania Ali;
Al-Joufi, Fakhria A.

Publication type:

Article

Correction to: Integration of scRNA-seq and bulk tissue RNA-seq data to identify cancer-associated fibroblast-related gene RGMA as a potential treatment target for esophageal cancer.

Published in:

2025

By:

Gao, Yanqing;
Bao, Shuguang;
Wen, Bao;
Li, Haoyuan;
Guo, Qiang;
Li, Ao;
Bao, Luri;
Li, Meitao;
Han, Bateer

Publication type:

Correction Notice

Comparative transcriptome analysis reveals the function of SoCER4 in alkanol synthesis in sugarcane.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01672-4

By:

Zhou, Yuting;
Yi, Sangui;
Li, Shuangcai;
Liu, Zongling

Publication type:

Article

CircNOX4 promotes proliferation and resistance by regulating the hsa-miR-6884-5p/YWHAG Axis and ERK signaling pathway in cholangiocarcinoma.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01668-0

By:

Yan, Zhangdi;
Du, Lixin;
Han, Yingdi;
Li, Kangshuai;
Sheng, Guoli;
Wang, Xudong;
Liu, Yunjia;
Zhang, Yuankun;
Deng, Jian;
Liu, Zengli;
Xu, Yunfei;
Zhang, Zongli;
Tang, Yongchang

Publication type:

Article

Analysis of the AP2/ERF transcription factor family in Eriobotrya japonica and its role in exogenous melatonin-mediated regulation of salt stress.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01667-1

By:

Zhu, Ling;
Liu, Fuhua;
Lin, Xin;
Fu, Tianyu;
Zou, Lin;
Pan, Yuanhai;
Zou, Rong;
Zhao, Yang;
Zhang, Hanyao

Publication type:

Article

Multiplex CRISPR-Cas9 editing of chlorophyll biosynthesis genes in chickpea via protoplast and Agrobacterium-mediated transformation.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01665-3

By:

Irum, Samra;
Biswas, Sudip;
Cilkiz, Mustafa;
Tsakirpaloglou, Nikolaos;
Thomson, Michael J.;
Septiningsih, Endang M.

Publication type:

Article

Multiplex CRISPR-Cas9 editing of chlorophyll biosynthesis genes in chickpea via protoplast and Agrobacterium-mediated transformation.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01665-3

By:

Irum, Samra;
Biswas, Sudip;
Cilkiz, Mustafa;
Tsakirpaloglou, Nikolaos;
Thomson, Michael J.;
Septiningsih, Endang M.

Publication type:

Article

Integrated multi-omics analysis and machine learning refine molecular subtypes and prognosis in hepatocellular carcinoma through O-linked glycosylation genes.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01669-z

By:

Li, Minghao;
Li, Hongxu;
Liu, Lei;
Wei, Qianyi;
Gao, Jie;
Hu, Bowen;
Wang, Zhihui;
Guo, Wenzhi;
Zhang, Yi;
Zhang, Shuijun

Publication type:

Article

Analysis of the AP2/ERF transcription factor family in Eriobotrya japonica and its role in exogenous melatonin-mediated regulation of salt stress.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01667-1

By:

Zhu, Ling;
Liu, Fuhua;
Lin, Xin;
Fu, Tianyu;
Zou, Lin;
Pan, Yuanhai;
Zou, Rong;
Zhao, Yang;
Zhang, Hanyao

Publication type:

Article

UBE2C: a potential therapeutic target and prognostic biomarker for prostate cancer patients.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01671-5

By:

Li, Shan;
Liu, Yang;
Wu, Xun;
Zhang, Qiuning;
Yuan, Wenzhen

Publication type:

Article

CRP and HNF1A collaborate to regulate the progression of laryngeal cancer through the Wnt signaling pathway.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01670-6

By:

Zhao, Zhigang;
Zhu, Xiaojing;
Xu, Jinyuan;
Song, Penglong;
Sun, Yanan;
Yang, Zhenming;
Wang, Li;
Zhang, Jiarui;
Zhao, Rui;
Chen, Xiaoxue;
Li, Wenjing;
Tian, Linli;
Liu, Ming

Publication type:

Article

ALKBH5-mediated NPC2 mRNA m<sup>6</sup>A demethylation promotes resistance to oxaliplatin in colorectal cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01651-9

By:

Wan, Peng;
Ren, Yuan;
Li, Hong-Tao

Publication type:

Article

Phosphoenolpyruvate carboxykinase 2 (PCK2) attenuates bovine adipocyte lipolysis through PNPLA2 activity repression.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01666-2

By:

Jiang, Chao;
Wu, Hao;
Zhang, Jiupan;
Song, Yaping;
Song, Xiaoyu;
Jiao, Ruopu;
Raza, Sayed Haidar Abbas;
Pant, Sameer Dinkar;
Zan, Linsen;
Wei, Dawei

Publication type:

Article

USP6NL knockdown suppresses colorectal cancer progression by inducing CASP9-Mediated apoptosis and disrupting FOXC2/SNAI1-Driven EMT and angiogenesis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01663-5

By:

Mohammed, Mohammed Ahmed;
Soffar, Ahmed Abdelmagied;
Yousef, Amany I.;
Salama, Mohammed;
Ibrahim, Fawziya A. R.;
El-Sewedy, Tarek;
Elmetwalli, Alaa

Publication type:

Article

Genome-wide characterization of invertases in Arabica coffee and its progenitors reveals putative genes involved in fruit development.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01662-6

By:

Ferraz, Gabriela Ester;
Gutiérrez, Robert Márquez;
Inoue, Tiago Yukio;
de Campos Rume, Gabriel;
Sales, Thais Aparecida;
Ramalho, Teodorico Castro;
Novaes, Evandro;
Zhang, Dapeng;
Chalfun-Junior, Antonio;
Gonçalves, Flavia Maria Avelar

Publication type:

Article

Integration of scRNA-seq and bulk tissue RNA-seq data to identify cancer-associated fibroblast-related gene RGMA as a potential treatment target for esophageal cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01660-8

By:

Gao, Yanqing;
Bao, Shuguang;
Wen, Bao;
Li, Haoyuan;
Guo, Qiang;
Li, Ao;
Bao, Luri;
Li, Meitao;
Han, Bateer

Publication type:

Article

Methyltransferase ZC3H13 regulates ferroptosis of alveolar macrophages in sepsis-associated acute lung injury via PRDX6/p53/SLC7A11 axis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01659-1

By:

Liang, Jifang;
Liu, Zemin;
He, Yajun;
Li, Heihei;
Wu, Weidong

Publication type:

Article

Integrating multiomics and modern breeding tools for accelerating genetic improvement in Annonas.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01653-7

By:

Prasad, Shri Hari;
Bignell, Grant;
Copeland, Rhys G.R.;
Garg, Vanika;
Chitikineni, Annapurna;
Henry, Robert J.;
Dillon, Natalie;
Mir, Reyazul Rouf;
Varshney, Rajeev K.

Publication type:

Article

SPP1 promotes malignant characteristics and drug resistance in hepatocellular carcinoma by activating fatty acid metabolic pathway.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01664-4

By:

Wang, Zhijiang;
Wang, Chengfang

Publication type:

Article

Efficient gene editing of BMP15, GDF9, and MSTN—but not the imprinted CLPG gene—in goat embryos via electrotransfection and handmade cloning.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01644-8

By:

Hajian, Mehdi;
Pirali, Ahmad;
Moghaddam, Seyed Hossein Hosseini;
Moradi-Hajidavaloo, Reza;
Varnosfaderani, Shiva Rouhollahi;
Jozi, Mina;
Izadi, Tayebeh;
Tanhaie-vash, Nima;
Kues, Wilfried;
Nasr-Esfahani, Mohammad-Hossein;
Jafarpour, Farnoosh;
Eghbalsaied, Shahin

Publication type:

Article

Integrated Nanopore and short-read RNA sequencing identifies dysregulation of METTL3- m6A modifications in endocrine therapy- sensitive and resistant breast cancer cells.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01658-2

By:

Petri, Belinda J.;
Piell, Kellianne M.;
Avila-Valdes, Bailey L.;
Stanley, Christian G.;
Winkler, Laura J.;
Brown, Johnny Tyler;
Ulett, Rye;
Sanchez, Gabriela;
Chariker, Julia H.;
Rouchka, Eric C.;
Klinge, Carolyn M.

Publication type:

Article

Immune-based molecular subtyping of triple-negative breast cancer via SNF-CC and functional validation of key immune-associated genes.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01654-6

By:

Guo, Pengwei;
Yan, Fengfei;
Chang, Hui;
Li, Fuchun;
Hu, Jinpeng;
Liu, Meizhe;
Li, Aidong

Publication type:

Article

Retraction Note: Xihuang pill facilitates glioma cell pyroptosis via the POU4F1/STAT3 axis.

Published in:

2025

By:

Tang, Ning;
Zhu, Yuanyuan;
Yu, Jianbai

Publication type:

Correction Notice

Increased CDKN2A expression correlates with resistance to platinum-based therapy and decreased infiltration of B lymphocytes in colon adenocarcinoma.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01657-3

By:

Gu, Ruru;
Li, Shuai;
Yu, Bin;
Gu, Jiaoyang;
Guan, Bingxin;
Wu, Honglei

Publication type:

Article

RNA G-quadruplexes: emerging regulators of gene expression and therapeutic targets.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01656-4

By:

Ruzi, Zukela;
Zha, Wei;
Yuan, Huang Yuan;
Liu, Jiaorui

Publication type:

Article

LncRNAs in hypoxic microenvironment; insight in their impact in cancer biology.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01635-9

By:

Kuriakose, Beena Briget;
Hjazi, Ahmed;
Saleh, Raed Obaid;
Bishoyi, Ashok Kumar;
Jyothi, S. Renuka;
Almalki, Sami G.;
Sridevi, G.;
Chaudhary, Kamlesh;
Zwamel, Ahmed Hussein;
Matchonov, O.

Publication type:

Article

Bioinformatics analysis and expression of the transcription factor MYC2 in Brassica napus in response to salt stress.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01647-5

By:

Mirzaei, Alireza;
Fooladi, Jamshid;
Fazeli-Nasab, Bahman;
Ghorbanpour, Mansour

Publication type:

Article

Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01640-y

By:

K., Murshid Muhammed P.;
Pagariya, Madhuri C.;
Jadhav, Pritam R.;
Gawade, Nikita S.;
Sarode, Dipak K.;
Karkute, Suhas Gorakh;
Kardile, Hemant B.;
Deshmukh, Rupesh;
Penna, Suprasanna;
Kawar, Prashant G.

Publication type:

Article

Transcriptome analysis reveals no obvious unintended effects in the spleen of CRISPR/Cas9-mediated CD163 and pAPN double-knockout pigs.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01639-5

By:

Liu, Zhi-Guo;
Wang, Nan;
Wang, Wan-Jie;
Huang, Lei;
Chi, Shun-Shun;
Nie, Yu-Xin;
Yuan, Mao-Sha;
Sun, Ya-Ru;
Mu, Yu-Lian;
Li, Kui

Publication type:

Article

Thermotolerance for yield and quality in rice: a novel NF-Ys-QT12 gene system.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01655-5

By:

Waqas, Muhammad Abu Bakar

Publication type:

Article

LRRC8A/PKC/FLNA pathway activation is detrimental to colon cancer patients.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01650-w

By:

Liu, Rong;
Zhao, Lijuan;
Cui, Shiyu;
Pouranfard, Masoud;
Jing, Zhenghui;
Ren, Yuhua;
Zhao, Wenbao;
Zhou, Dangxia;
Zhang, Haifeng

Publication type:

Article

Exploring the m<sup>5</sup>C epitranscriptome of mRNAs in breast cancer cells through genome engineering and long-read sequencing approaches.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01648-4

By:

Athanasopoulou, Konstantina;
Adamopoulos, Panagiotis G.;
Tsiakanikas, Panagiotis;
Scorilas, Andreas

Publication type:

Article

Breaking the palatability trade-off: idealizing resistant starch in rice.

Published in:

2025

By:

Chandra, Tilak;
Jaiswal, Sarika;
Iquebal, Mir Asif;
Kumar, Dinesh

Publication type:

Letter

Integrated multi-omics analysis of UL16-binding protein 2 as a prognostic and immunotherapy biomarker for colorectal cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01646-6

By:

Qu, Xin-Yang;
Xu, Yong;
Wu, Rui-Min;
Xiao, Gao-Chun;
Wang, Ping-Feng;
Xie, Jin;
Liu, Xu-Sheng

Publication type:

Article

Comprehensive multi-omics analysis of nucleotide metabolism: elucidating the role and prognostic significance of UCK2 in bladder cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01642-w

By:

Guo, Yadong;
Lin, Ziyou;
Zhang, Wentao;
Chen, Haotian;
Chen, Yuxin;
Liu, Yongqiang;
Shan, Zezhi;
Mao, Shiyu;
Yao, Xudong

Publication type:

Article

Multi-omics approaches: transforming the landscape of natural product isolation.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01645-7

By:

Sahana, Soumitra;
Sarkar, Jyotirmay;
Mandal, Sourav;
Chatterjee, Indranil;
Dhar, Susmita;
Datta, Samaresh;
Mondal, Sumanta

Publication type:

Article

WISP2/CCN5 revealed as a potential diagnostic biomarker for endometriosis based on machine learning and single-cell transcriptomic analysis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01631-z

By:

Dou, Sheng;
Ling, Shaohua;
Nong, Weihua;
Wei, Bixiao;
Huang, Yuehua;
Li, Guangjing;
Wang, Rong;
Qin, Haimei

Publication type:

Article

Genome-wide analysis of AHP genes in soybean and the role of GmAHP10 in improving salt stress tolerance.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01636-8

By:

Cao, Lingfang;
Cao, Jinlong;
Wang, Li;
Wang, Jianjun;
Che, Zhijun

Publication type:

Article

Genome-wide identification and functional analysis of TCX gene family and the critical role of GhTCX17 in response to drought and salt stress in cotton.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01632-y

By:

Wei, Yangyang;
Zhai, Jingjing;
Geng, Shuaikang;
Zhang, Shaoliang;
Zhao, Yongqing;
Cui, Bingkai;
Shan, Huiyun;
Li, Yanhua;
Wang, Cong;
Li, Pengtao;
Liu, Yuling;
Lu, Quanwei;
Zhang, Baohong;
Peng, Renhai

Publication type:

Article

QBEmax redefines the precise base editing in crop plants.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01638-6

By:

Sajjad, Muhammad Waseem;
Muzamil, Fatima;
Naqvi, Rubab Zahra;
Amin, Imran

Publication type:

Article

Doubling the grain: Harnessing the power of DG1 promoter inversion in sorghum.

Published in:

2025

By:

Chandra, Tilak

Publication type:

Letter

Unveiling the Therapeutic Potential of Targeting RRM2 in Hepatocellular Carcinoma: An Integrated In Silico and In Vitro Study.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01630-0

By:

Ibrahim, Lobna;
Mohamed, Rania Hassan;
Tolba, Mahmoud M.;
Radwan, Sara M.;
Hamdy, Nadia M.;
Elhefnawi, Mahmoud

Publication type:

Article

Genome-resolved metagenomics from short-read sequencing data in the era of artificial intelligence.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01625-x

By:

Qayyum, Hajra;
Ishaq, Zaara;
Ali, Amjad;
Kayani, Masood Ur Rehman;
Huang, Lisu

Publication type:

Article

CRISPR/Cas9-mediated editing of jasmonic acid pathways to enhance biotic & abiotic stress tolerance: An overview & prospects.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01623-z

By:

Kaur, Jaspreet;
Viswanathan P, Ananthu;
Bari, Vinay Kumar

Publication type:

Article

Integrated muti-omics data and machine learning reveal CD151 as a key biomarker inducing chemoresistance in metabolic syndrome-related early-onset left-sided colorectal cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01634-w

By:

Hou, Yingdong;
Xia, Hubin;
Xu, Chenshan;
Yu, Yuhua;
Ji, Chenghao;
Ruan, Wenli;
Kong, Wencheng;
Zhou, Yifeng;
Zhang, Xiaofeng

Publication type:

Article

PIN1 serves as a prognostic and therapeutic biomarker in lung adenocarcinoma.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01629-7

By:

Yu, Juncheng;
Lu, Xiao;
Zhou, Dong;
Zhang, Jiao;
Deng, Xufeng;
Liu, Xiaobing;
Wang, Kai;
Liao, Shuangqing;
Zheng, Hong;
Dai, Jigang

Publication type:

Article