Works matching IS 1438-793X AND VI 25 AND IP 1 AND DT 2025

Results: 139

LncRNAs in hypoxic microenvironment; insight in their impact in cancer biology.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01635-9

By:

Kuriakose, Beena Briget;
Hjazi, Ahmed;
Saleh, Raed Obaid;
Bishoyi, Ashok Kumar;
Jyothi, S. Renuka;
Almalki, Sami G.;
Sridevi, G.;
Chaudhary, Kamlesh;
Zwamel, Ahmed Hussein;
Matchonov, O.

Publication type:

Article

Bioinformatics analysis and expression of the transcription factor MYC2 in Brassica napus in response to salt stress.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01647-5

By:

Mirzaei, Alireza;
Fooladi, Jamshid;
Fazeli-Nasab, Bahman;
Ghorbanpour, Mansour

Publication type:

Article

Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01640-y

By:

K., Murshid Muhammed P.;
Pagariya, Madhuri C.;
Jadhav, Pritam R.;
Gawade, Nikita S.;
Sarode, Dipak K.;
Karkute, Suhas Gorakh;
Kardile, Hemant B.;
Deshmukh, Rupesh;
Penna, Suprasanna;
Kawar, Prashant G.

Publication type:

Article

Transcriptome analysis reveals no obvious unintended effects in the spleen of CRISPR/Cas9-mediated CD163 and pAPN double-knockout pigs.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01639-5

By:

Liu, Zhi-Guo;
Wang, Nan;
Wang, Wan-Jie;
Huang, Lei;
Chi, Shun-Shun;
Nie, Yu-Xin;
Yuan, Mao-Sha;
Sun, Ya-Ru;
Mu, Yu-Lian;
Li, Kui

Publication type:

Article

Thermotolerance for yield and quality in rice: a novel NF-Ys-QT12 gene system.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01655-5

By:

Waqas, Muhammad Abu Bakar

Publication type:

Article

LRRC8A/PKC/FLNA pathway activation is detrimental to colon cancer patients.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01650-w

By:

Liu, Rong;
Zhao, Lijuan;
Cui, Shiyu;
Pouranfard, Masoud;
Jing, Zhenghui;
Ren, Yuhua;
Zhao, Wenbao;
Zhou, Dangxia;
Zhang, Haifeng

Publication type:

Article

Comprehensive insights and In silico analysis into the emerging role of LincRNAs in lung diseases pathogenesis; a step toward ncRNA precision.

Published in:

2025

By:

Hamdy, Nadia M.;
Zaki, Mohamed Bakr;
Abdelmaksoud, Nourhan M.;
Elshaer, Shereen Saeid;
Abd-Elmawla, Mai A.;
Rizk, Nehal I.;
Fathi, Doaa;
Doghish, Ahmed S.;
Abulsoud, Ahmed I.

Publication type:

Literature Review

miRNAs and their multifaceted role in cutaneous wound healing.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01535-y

By:

Mansour, Reda M.;
Mageed, Sherif S. Abdel;
Awad, Farah A.;
Sadek, Mohamed M.;
Adel, Shehab Ahmed;
Ashraf, Alaa;
Alam-Eldein, Khaled M.;
Ahmed, Nada E.;
Abdelaziz, Rana Y.;
Tolba, Esraa Farid;
Mohamed, Hend H.;
Rizk, Nehal I.;
Mohamed, Mohamed O.;
Mohammed, Osama A.;
Doghish, Ahmed S.

Publication type:

Article

Mitochondria and its epigenetic dynamics: Insight into synaptic regulation and synaptopathies.

Published in:

2025

By:

Gupta, Shiwangi;
Kishore, Abhinoy;
Rishi, Vikas;
Aggarwal, Aanchal

Publication type:

Literature Review

Heterogeneity analysis and prognostic model construction of HPV negative oral squamous cell carcinoma T cells using ScRNA-seq and bulk-RNA analysis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01525-6

By:

Li, Chunyan;
Lv, Zengbo;
Li, Chongxin;
Yang, Shixuan;
Liu, Feineng;
Zhang, Tengfei;
Wang, Lin;
Zhang, Wen;
Deng, Ruoyu;
Xu, Guoyu;
Luo, Huan;
Zhao, Yinhong;
Lv, Jialing;
Zhang, Chao

Publication type:

Article

The interactive role of microRNA and other non-coding RNA in hepatitis B (HBV) associated fibrogenesis.

Published in:

2025

By:

Sartorius, Kurt;
Wang, Yanglong;
Sartorius, Benn;
Antwi, Samuel O.;
Li, Xiaodong;
Chuturgoon, Anil;
Yu, Chongyuan;
Lu, Yunjie;
Wang, Yu

Publication type:

Literature Review

The interactive role of microRNA and other non-coding RNA in hepatitis B (HBV) associated fibrogenesis.

Published in:

2025

By:

Sartorius, Kurt;
Wang, Yanglong;
Sartorius, Benn;
Antwi, Samuel O.;
Li, Xiaodong;
Chuturgoon, Anil;
Yu, Chongyuan;
Lu, Yunjie;
Wang, Yu

Publication type:

Literature Review

The role of nanoparticles in transforming plant genetic engineering: advancements, challenges and future prospects.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01528-x

By:

Rani, Neelam;
Kumari, Kusum;
Hooda, Vinita

Publication type:

Article

Prioritization of candidate genes regulating the dwarfness in rice by integration of whole-genome and transcriptome analyses.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01532-1

By:

Ariharasutharsan, Gunasekaran;
Karthikeyan, Adhimoolam;
Geetha, Seshadri;
Raveendran, Muthurajan;
Lalitha, Ravi;
Ananda-Lekshmi, Latha;
Akilan, Manoharan;
Sushmitharaj, Dhanalakshmi Veeraraj;
Dhasarathan, Manickam;
Saraswathi, Ramasamy;
Arunachalam, Paramasivam

Publication type:

Article

Genomics-assisted stacking of waxy1, opaque2, and crtRB1 genes for enhancing amylopectin in biofortified maize for industrial utilization and nutritional security.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01523-8

By:

Mishra, Subhra J.;
Hossain, Firoz;
Zunjare, Rajkumar U.;
Chhabra, Rashmi;
Katral, Ashvinkumar;
Gopinath, Ikkurti;
Bhatt, Vinay;
Sarma, Govinda Rai;
Talukder, Zahirul A.;
Kasana, Ravindra K.;
Devi, Elangbam L.;
Sarika, Konsam;
Mehta, Brijesh K.;
Guleria, Satish K.;
Kumar, Jitender;
Muthusamy, Vignesh

Publication type:

Article

Role of long non-coding RNAs and natural products in prostate cancer: insights into key signaling pathways.

Published in:

2025

By:

Doghish, Ahmed S.;
Mageed, Sherif S. Abdel;
Zaki, Mohamed Bakr;
Abd-Elmawla, Mai A.;
Sayed, Ghadir A.;
Hatawsh, Abdulrahman;
Aborehab, Nora M.;
Moussa, Rewan;
Mohammed, Osama A.;
Abdel-Reheim, Mustafa Ahmed;
Elimam, Hanan

Publication type:

Literature Review

Overexpression of FTO alleviates traumatic brain injury induced posttraumatic epilepsy by upregulating NR4A2 expression via m6A demethylation.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01522-9

By:

Xiao, Manjun;
Wang, Xiaohong;
Xiao, Enhua;
Ming, Qianwen

Publication type:

Article

Pan-cancer secreted proteome and skeletal muscle regulation: insight from a proteogenomic data-driven knowledge base.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01524-7

By:

Parry, Traci L.;
Gilmore, L. Anne;
Khamoui, Andy V.

Publication type:

Article

Elucidating circRNA-miRNA-mRNA competing endogenous regulatory RNA network during leaf rust pathogenesis in wheat (Triticum aestivum L.)

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01520-x

By:

Dhandhanya, Umang Kumar;
Afreen, Uzma;
Jha, Shailendra Kumar;
Mukhopadhyay, Kunal;
Kumar, Manish

Publication type:

Article

Narciclasine attenuates sepsis-associated acute kidney injury through the ESR1/S100A11 axis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01513-w

By:

Yin, Liping;
Huang, Xiaofei;
Zhang, Beibei;
Zhu, Qiyong;
Zhao, Hui

Publication type:

Article

pmiRScan: a LightGBM based method for prediction of animal pre-miRNAs.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01527-y

By:

Venkatesan, Amrit;
Basak, Jolly;
Bahadur, Ranjit Prasad

Publication type:

Article

Unraveling the potential mechanism and prognostic value of pentose phosphate pathway in hepatocellular carcinoma: a comprehensive analysis integrating bulk transcriptomics and single-cell sequencing data.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01521-w

By:

Li, Bin;
Zeng, Tao;
Chen, Cui;
Wu, Yuankai;
Huang, Shuying;
Deng, Jing;
Pang, Jiahui;
Cai, Xiang;
Lin, Yuxi;
Sun, Yina;
Chong, Yutian;
Li, Xinhua;
Gong, Jiao;
Tang, Guofang

Publication type:

Article

Impact of structural variations and genome partitioning on bread wheat hybrid performance.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01512-x

By:

Gimenez, Kevin;
Blanc, Pierre;
Argillier, Odile;
Kitt, Jonathan;
Pierre, Jean-Baptiste;
Le Gouis, Jacques;
Paux, Etienne

Publication type:

Article

Transcription factor MAZ activates the transcription of hypomethylated TYMP in ccRCC.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01510-z

By:

Dong, Yihan;
Liu, Xinyu;
Li, Jiaxin;
Lin, Tianyu;
Wang, Rui;
Jiang, Huamao;
Wang, Yong;
Yue, Dan

Publication type:

Article

Epigenetic modification mediated by PHF20/METTL14/HOXA13 signaling axis modulates osteogenic differentiation of mesenchymal stem cells.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01516-7

By:

Feng, Weijia;
Chen, Ting

Publication type:

Article

Application of a high-throughput swarm-based deep neural network Algorithm reveals SPAG5 downregulation as a potential therapeutic target in adult AML.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01514-9

By:

Ajonu, Chinyere I;
Grundy, Robert I;
Ball, Graham R;
Zafeiris, Dimitrios

Publication type:

Article

Towards assembling functional cyanobacterial β-carboxysomes in Oryza sativa chloroplasts.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01518-5

By:

Sidhu, Gurbir Kaur;
Pandey, Rakesh;
Kaur, Gurdeep;
Singh, Anjulata;
Lenka, Sangram K.;
Reddy, Pallavolu M.

Publication type:

Article

A cutting-edge investigation of the multifaceted role of SOX family genes in cancer pathogenesis through the modulation of various signaling pathways.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01517-6

By:

Jasim, Saade Abdalkareem;
Farhan, Shireen Hamid;
Ahmad, Irfan;
Hjazi, Ahmed;
Kumar, Ashwani;
Jawad, Mohammed Abed;
Pramanik, Atreyi;
Altalbawy, M. A. Farag;
Alsaadi, Salim B.;
Abosaoda, Munther Kadhim

Publication type:

Article

Circular RNAs in the pathogenesis of SARS-CoV-2: potential diagnostic biomarkers and therapeutic targets.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01509-6

By:

Wu, JiaJie;
Li, Lele;
Xu, Wei;
Xia, Xiaoping;
Wu, Yingping

Publication type:

Article

Barley stripe mosaic virus-induced gene silencing for functional validation of abiotic stress in barley.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01508-7

By:

Admas, Tayachew;
Wudu, Maru;
Berhanie, Hailu

Publication type:

Article

Unraveling the organellar genomic landscape of the therapeutic and entheogenic plant Mimosa tenuiflora: insights into genetic, structural, and evolutionary dynamics.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01511-y

By:

Trinca, Vitor;
Silva, Saura R.;
Almeida, João V. A.;
Miranda, Vitor F. O.;
Costa-Macedo, José V.;
Carnaval, Tatiane K. B. A.;
Araújo, Draulio B.;
Prosdocimi, Francisco;
Varani, Alessandro M.

Publication type:

Article

Xuanhong Dingchuan Tang suppresses bronchial asthma inflammation via the microRNA-107-3p/PTGS2/MAPK axis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01506-9

By:

Ming, Xi;
Lu, Yingzhu;
Huang, Huihui;
Zheng, Jialin;
Wang, Tianzi;
Li, Zhuoqun;
Yu, Xingzhu;
Xiong, Lei

Publication type:

Article

From fatty liver to fibrosis: the impact of miRNAs on NAFLD and NASH.

Published in:

2025

By:

Mansour, Reda M.;
Abdel Mageed, Sherif S.;
Abulsoud, Ahmed I.;
Sayed, Ghadir A;
Lutfy, Radwa H.;
Awad, Farah A.;
Sadek, Mohamed M.;
Shaker, Abanoub A. S.;
Mohammed, Osama A.;
Abdel-Reheim, Mustafa Ahmed;
Elimam, Hanan;
Doghish, Ahmed S.

Publication type:

Literature Review

Gonadal miRNomes and transcriptomes in infected fish reveal sexually dimorphic patterns of the immune response.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01537-w

By:

van Gelderen, Tosca A.;
Debnath, Pinky;
Joly, Silvia;
Bertomeu, Edgar;
Duncan, Neil;
Furones, Dolors;
Ribas, Laia

Publication type:

Article

Leptin drives glucose metabolism to promote cardiac protection via OPA1-mediated HDAC5 translocation and Glut4 transcription.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-024-01515-8

By:

Yang, Fan;
He, Youfu;
Zhao, Ling;
Huang, Jing;
Du, Fawang;
Tian, Shui;
Zhang, Yang;
Liu, Xinghui;
Chen, Baolin;
Ge, Junhua;
Jiang, Zhi

Publication type:

Article

Transforming tomatoes into GABA-rich functional foods through genome editing: A modern biotechnological approach.

Published in:

2025

By:

Sakthivel, Kausalya;
Balasubramanian, Rajagopal;
Sampathrajan, Vellaikumar;
Veerasamy, Ravichandran;
Appachi, Sathiyamurthy V.;
K.K, Kumar

Publication type:

Literature Review

Comparison of the rhizospheric soil bacteriomes of Oryza sativa and Solanum melongena crop cultivars reveals key genes and pathways involved in biosynthesis of ectoine, lysine, and catechol meta-cleavage.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01536-x

By:

Mandal, Manisha;
Ghosh, Biswajit;
Mandal, Shyamapada

Publication type:

Article

SUMMER: an integrated nanopore sequencing pipeline for variants detection and clinical annotation on the human genome.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01534-z

By:

Li, Renqiuguo;
Chu, Hongyuan;
Gao, Kai;
Luo, Huaxia;
Jiang, Yuwu

Publication type:

Article

Exploring the m<sup>5</sup>C epitranscriptome of mRNAs in breast cancer cells through genome engineering and long-read sequencing approaches.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01648-4

By:

Athanasopoulou, Konstantina;
Adamopoulos, Panagiotis G.;
Tsiakanikas, Panagiotis;
Scorilas, Andreas

Publication type:

Article

Breaking the palatability trade-off: idealizing resistant starch in rice.

Published in:

2025

By:

Chandra, Tilak;
Jaiswal, Sarika;
Iquebal, Mir Asif;
Kumar, Dinesh

Publication type:

Letter

Integrated multi-omics analysis of UL16-binding protein 2 as a prognostic and immunotherapy biomarker for colorectal cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01646-6

By:

Qu, Xin-Yang;
Xu, Yong;
Wu, Rui-Min;
Xiao, Gao-Chun;
Wang, Ping-Feng;
Xie, Jin;
Liu, Xu-Sheng

Publication type:

Article

Doubling the grain: Harnessing the power of DG1 promoter inversion in sorghum.

Published in:

2025

By:

Chandra, Tilak

Publication type:

Letter

Comprehensive multi-omics analysis of nucleotide metabolism: elucidating the role and prognostic significance of UCK2 in bladder cancer.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01642-w

By:

Guo, Yadong;
Lin, Ziyou;
Zhang, Wentao;
Chen, Haotian;
Chen, Yuxin;
Liu, Yongqiang;
Shan, Zezhi;
Mao, Shiyu;
Yao, Xudong

Publication type:

Article

WISP2/CCN5 revealed as a potential diagnostic biomarker for endometriosis based on machine learning and single-cell transcriptomic analysis.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01631-z

By:

Dou, Sheng;
Ling, Shaohua;
Nong, Weihua;
Wei, Bixiao;
Huang, Yuehua;
Li, Guangjing;
Wang, Rong;
Qin, Haimei

Publication type:

Article

Genome-wide analysis of AHP genes in soybean and the role of GmAHP10 in improving salt stress tolerance.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01636-8

By:

Cao, Lingfang;
Cao, Jinlong;
Wang, Li;
Wang, Jianjun;
Che, Zhijun

Publication type:

Article

Genome-wide identification and functional analysis of TCX gene family and the critical role of GhTCX17 in response to drought and salt stress in cotton.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01632-y

By:

Wei, Yangyang;
Zhai, Jingjing;
Geng, Shuaikang;
Zhang, Shaoliang;
Zhao, Yongqing;
Cui, Bingkai;
Shan, Huiyun;
Li, Yanhua;
Wang, Cong;
Li, Pengtao;
Liu, Yuling;
Lu, Quanwei;
Zhang, Baohong;
Peng, Renhai

Publication type:

Article

QBEmax redefines the precise base editing in crop plants.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01638-6

By:

Sajjad, Muhammad Waseem;
Muzamil, Fatima;
Naqvi, Rubab Zahra;
Amin, Imran

Publication type:

Article

Multi-omics approaches: transforming the landscape of natural product isolation.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01645-7

By:

Sahana, Soumitra;
Sarkar, Jyotirmay;
Mandal, Sourav;
Chatterjee, Indranil;
Dhar, Susmita;
Datta, Samaresh;
Mondal, Sumanta

Publication type:

Article

Unveiling the Therapeutic Potential of Targeting RRM2 in Hepatocellular Carcinoma: An Integrated In Silico and In Vitro Study.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01630-0

By:

Ibrahim, Lobna;
Mohamed, Rania Hassan;
Tolba, Mahmoud M.;
Radwan, Sara M.;
Hamdy, Nadia M.;
Elhefnawi, Mahmoud

Publication type:

Article

Genome-resolved metagenomics from short-read sequencing data in the era of artificial intelligence.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01625-x

By:

Qayyum, Hajra;
Ishaq, Zaara;
Ali, Amjad;
Kayani, Masood Ur Rehman;
Huang, Lisu

Publication type:

Article