Works in Functional & Integrative Genomics, 2023, Vol 23, Issue 3

Results: 92

The dysregulation of miRNAs in epilepsy and their regulatory role in inflammation and apoptosis.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01220-y

By:

Xie, Guoping;
Chen, Huan;
He, Chan;
Hu, Siheng;
Xiao, Xue;
Luo, Qunying

Publication type:

Article

Development and validation a prognostic model based on natural killer T cells marker genes for predicting prognosis and characterizing immune status in glioblastoma through integrated analysis of single-cell and bulk RNA sequencing.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01217-7

By:

Hu, Jiahe;
Xu, Lei;
Fu, Wenchao;
Sun, Yanan;
Wang, Nan;
Zhang, Jiheng;
Yang, Chengyun;
Zhang, Xiaoling;
Zhou, Yuxin;
Wang, Rongfang;
Zhang, Haoxin;
Mou, Ruishu;
Du, Xinlian;
Li, Xuedong;
Hu, Shaoshan;
Xie, Rui

Publication type:

Article

Integrated analysis of single-cell and bulk RNA sequencing data identifies the characteristics of ferroptosis in lumbar disc herniation.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01216-8

By:

Lu, Ziqiang;
Zheng, Zhenyu

Publication type:

Article

CLASRP oncogene as a novel target for colorectal cancer.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01208-8

By:

Gu, Quan;
Wu, Jianzhong;
Xu, Heng;
Cao, Haixia;
Zhang, Junying;
Jing, Changwen;
Wang, Zhuo;
Du, Mengjie;
Ma, Rong;
Feng, Jifeng

Publication type:

Article

Draft genome sequence of Staphylococcus aureus sequence type 5 SA01 isolated from bloodstream infection and comparative analysis with reference strains.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01204-y

By:

Ferreira, Romulo Maia;
dos Santos Silva, Douglas Henrique;
Silva, Karinny Farias;
de Melo Monteiro, Joveliane;
Ferreira, Gabriella Freitas;
Silva, Maria Raimunda Chagas;
da Silva, Luís Claudio Nascimento;
de Castro Oliveira, Letícia;
Monteiro, Andrea Souza

Publication type:

Article

Kinesin family member 11 promotes progression of hepatocellular carcinoma via the OCT4 pathway.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01209-7

By:

Zhang, Ju;
Wei, Zuxing;
Qi, Xiaoyan;
Jiang, Yuhong;
Liu, Dekun;
Liu, Kuijie

Publication type:

Article

Genetic basis of genome size variation of wheat.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01194-x

By:

Zhang, Ming;
Qiu, Xuebing

Publication type:

Article

Genetic modification strategies for enhancing plant resilience to abiotic stresses in the context of climate change.

Published in:

2023

By:

KhokharVoytas, Amman;
Shahbaz, Muhammad;
Maqsood, Muhammad Faisal;
Zulfiqar, Usman;
Naz, Nargis;
Iqbal, Usama Zafar;
Sara, Maheen;
Aqeel, Muhammad;
Khalid, Noreen;
Noman, Ali;
Zulfiqar, Faisal;
Al Syaad, Khalid M.;
AlShaqhaa, Manal Abdullah

Publication type:

Letter

Identification of six genes associated with COVID-19-related circadian rhythm dysfunction by integrated bioinformatic analysis.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01198-7

By:

Xu, Yanfeng;
Zhang, Mingyu;
Wang, Guanyun;
Yang, Jigang

Publication type:

Article

MiR-22-3p suppresses NSCLC cell migration and EMT via targeting RAC1 expression.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01211-z

By:

Wang, Xuejiao;
Wang, Xiaobin;
Jiang, Tao;
Zhang, Zhipei;
Xie, Nianlin;
Yang, Guang

Publication type:

Article

Deltex E3 ubiquitin ligase 4 promotes thyroid cancer progression through stearoyl-CoA desaturase 1.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01215-9

By:

Cui, Yitong;
Luo, Jia;
Bai, Nanfang;
Yu, Zhaoyan

Publication type:

Article

Cuproptosis-related gene SLC31A1 expression correlates with the prognosis and tumor immune microenvironment in glioma.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01210-0

By:

Wang, Jun;
Li, Shenglun;
Guo, Yuduo;
Zhao, Chao;
Chen, Yujia;
Ning, Weihai;
Yang, Jingjing;
Zhang, Hongwei

Publication type:

Article

From parasites to partners: exploring the intricacies of host-transposon dynamics and coevolution.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01206-w

By:

Chakrabarty, Prayas;
Sen, Raneet;
Sengupta, Sugopa

Publication type:

Article

Cloning and functional analysis of the DXR gene and promoter region in Osmanthus fragrans var. semperflorens.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01214-w

By:

Wang, Zihan;
Farooq, Taimoor Hassan;
He, Hanjie;
Shahani, Aitzaz A.A.;
Hameed, Rashida;
Fayyaz, Amna;
Yousaf, Muhammad Sohail;
Wang, Jun;
Chen, Lili

Publication type:

Article

GsPKS24, a calcineurin B-like protein-interacting protein kinase gene from Glycine soja, positively regulates tolerance to pH stress and ABA signal transduction.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01213-x

By:

Ding, Deqiang;
Mi, Xue;
Wu, Jingyu;
Nisa, Zaib-un;
Elansary, Hosam O.;
Jin, Xiaoxia;
Yu, Lijie;
Chen, Chao

Publication type:

Article

Circular RNA circSP5 promotes liver metastasis of colorectal cancer via SP5-mediated BAMBI transcription.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01142-9

By:

Zhi, Yingru;
Gao, Qingyuan;
Wang, Zhibing;
Dong, Yu;
Guan, Yue;
Yuan, Jie;
Zhang, Zhenyu

Publication type:

Article

Interplay of calcium signaling and ERF-VII stability in plant hypoxia tolerance.

Published in:

2023

By:

Singh, Jawahar;
Mishra, Vishnu;
Varshney, Vishal;
Jha, Shweta

Publication type:

Letter

Identification and characterization of TMV-induced volatile signals in Nicotiana benthamiana: evidence for JA/ET defense pathway priming in congeneric neighbors via airborne (E)-2-octenal.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01203-z

By:

Hong, Yi;
Zheng, Qingxia;
Cheng, Lingtong;
Liu, Pingping;
Xu, Guoyun;
Zhang, Hui;
Cao, Peijian;
Zhou, Huina

Publication type:

Article

The Germin-like protein gene OsGER4 is involved in heat stress response in rice root development.

Published in:

2023

By:

Nguyen, Trang Thi;
Pham, Dan The;
Nguyen, Nhung Hong;
Do, Phat Tien;
To, Huong Thi Mai

Publication type:

Letter

Integrated metabolomics and transcriptomics analyses reveal the key genes regulating differential metabolites of longissimus dorsi muscle in castrated South Sichuan black goats (Capra hircus)

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01199-6

By:

Zhang, Nanchi;
Xu, Feng;
Wang, Li;
Emu, Quzhe;
Wei, Yong;
Zhang, Lin;
Xu, Yuan;
Fan, Jingsheng;
Sun, Yan;
Shama, Shuobu;
Zhou, Hongyan;
Li, Chunmei;
Zhou, Li;
Li, Bo;
Min, Jie

Publication type:

Article

Transcriptome and methylome sequencing reveals altered long non-coding RNA genes expression and their aberrant DNA methylation in equine sarcoids.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01200-2

By:

Semik-Gurgul, Ewelina;
Gurgul, Artur;
Szmatoła, Tomasz

Publication type:

Article

CircUSP48 promotes malignant behavior by regulating CYR61 via miR-365 in osteosarcoma.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01197-8

By:

Chen, Shunguang;
Xu, Yan;
Yang, Bo

Publication type:

Article

YY1 regulates the proliferation and invasion of triple-negative breast cancer via activating PLAUR.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01193-y

By:

Zhang, Chao;
Chen, Shiyuan;
Wang, Wei;
Gao, Yong

Publication type:

Article

Comprehensive analysis of mRNAs in the cerebral cortex in APP/PS1 double-transgenic mice with Alzheimer's disease based on high-throughput sequencing of N4-acetylcytidine.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01192-z

By:

Ma, Yanzhen;
Fan, Chang;
Wang, Yongzhong;
Li, Weizu;
Jiang, Hui;
Yang, Wenming

Publication type:

Article

Exploring the diagnostic value, prognostic value, and biological functions of NPC gene family members in hepatocellular carcinoma based on a multi-omics analysis.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01195-w

By:

Chen, Keheng;
Zhang, Xin;
Peng, Huixin;
Huang, Fengdie;
Sun, Guangyu;
Xu, Qijiang;
Liao, Lusheng;
Xing, Zhiyong;
Zhong, Yanping;
Fang, Zhichao;
Liao, Meihua;
Luo, Shihua;
Chen, Wencheng;
Dong, Mingyou

Publication type:

Article

Integrated multiomics analysis of chromosome 19 miRNA cluster in bladder cancer.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01191-0

By:

Ware, Akshay Pramod;
Satyamoorthy, Kapaettu;
Paul, Bobby

Publication type:

Article

CRISPR/Cas9 genome editing in wheat: enhancing quality and productivity for global food security—a review.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01190-1

By:

Elsharawy, Hany;
Refat, Moath

Publication type:

Article

Characterizing the key genes of COVID-19 that regulate tumor immune microenvironment and prognosis in hepatocellular carcinoma.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01184-z

By:

Gao, Shuang;
Zhang, Lei;
Wang, Huiyan

Publication type:

Article

A prospective prognostic signature for pancreatic adenocarcinoma based on ubiquitination-related mRNA-lncRNA with experimental validation in vitro and vivo.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01158-1

By:

Wang, Zhizhou;
Yuan, Qihang;
Chen, Xu;
Luo, Fei;
Shi, Xueying;
Guo, Fangyue;
Ren, Jie;
Li, Shuang;
Shang, Dong

Publication type:

Article

Andrographis modulates cisplatin resistance in lung cancer via miR-155-5p/SIRT1 axis.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01186-x

By:

Pang, Chong;
Zhang, Tengyue;
Chen, Yulong;
Yan, Bo;
Chen, Chen;
Zhang, Zhenfa;
Wang, Changli

Publication type:

Article

Mulberry fruit repairs alcoholic liver injury by modulating lipid metabolism and the expression of miR-155 and PPARα in rats.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01131-y

By:

Qiao, Jingyi;
Li, Hanwei;
Jinxiang, Chen;
Shi, Yanmei;
Li, Ning;
Zhu, Pingsheng;
Zhang, Sisen;
Miao, Mingsan

Publication type:

Article

Elucidating the role of T-cell exhaustion-related genes in colorectal cancer: a single-cell bioinformatics perspective.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01188-9

By:

Tu, Wei;
Tu, Yan;
Tan, Chunhong;
Zhong, Honghong;
Xu, Sheng;
Wang, Jun;
Huang, Lv;
Cheng, Ling;
Li, Haoguang

Publication type:

Article

The impact of the Hedgehog signal pathway on the tumor immune microenvironment of gastric adenocarcinoma by integrated analysis of scRNA-seq and RNA-seq datasets.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01187-w

By:

Zhong, Jie;
Sun, Yan;
Wu, Sijia;
Zhang, Tianying;
Yang, Jie;
He, Yuhua;
Liu, Kai

Publication type:

Article

Hyper-methylation of ABCG1 as an epigenetics biomarker in non-small cell lung cancer.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01185-y

By:

Tran, Thi-Oanh;
Lam, Luu Ho Thanh;
Le, Nguyen Quoc Khanh

Publication type:

Article

Promoting proliferation and tumorigenesis of breast cancer: KCND2’s significance as a prognostic factor.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01183-0

By:

Yang, Shengjie;
Zhou, Pengpeng;
Qi, Lu;
Wang, Yu;
Li, Yang;
Wang, Xinghe

Publication type:

Article

Identification and characterization of RuvBL DNA helicase genes for tolerance against abiotic stresses in bread wheat (Triticum aestivum L.) and related species.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01177-y

By:

Chaudhary, Jyoti;
Gautam, Tinku;
Gahlaut, Vijay;
Singh, Kalpana;
Kumar, Sourabh;
Batra, Ritu;
Gupta, Pushpendra Kumar

Publication type:

Article

Exploring and targeting potential druggable antimicrobial resistance targets ArgS, SecY, and MurA in Staphylococcus sciuri with TCM inhibitors through a subtractive genomics strategy.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01179-w

By:

Khan, Aafareen;
Sohail, Saman;
Yaseen, Seerat;
Fatima, Sareen;
Wisal, Ayesha;
Ahmed, Sufyan;
Nasir, Mahrukh;
Irfan, Muhammad;
Karim, Asad;
Basharat, Zarrin;
Khan, Yasmin;
Aurongzeb, Muhammad;
Raza, Syed Kashif;
Alshahrani, Mohammad Y.;
Morel, Carlos M.;
Hassan, Syed S.

Publication type:

Article

RNA-seq analysis reveals an immunomodulatory peptide from highland barley activating RAW264.7 macrophages via TNF/NF-κB signaling pathway.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01180-3

By:

Liu, Yan;
Chen, Xin;
Yang, Jia-Yi;
Guo, Zhi Jian;
Wu, Qin;
Zhang, Li-Da;
Zhou, Xuan-Wei

Publication type:

Article

Correction to: Fantastic genes: where and how to find them? Exploiting rice genetic resources for the improvement of yield, tolerance, and resistance to a wide array of stresses in rice.

Published in:

2023

By:

Reyes, Vincent Pamugas

Publication type:

Correction Notice

Advances in application of circulating tumor DNA in ovarian cancer.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01181-2

By:

Xia, Ting;
Fang, Chenyan;
Chen, Yaqing

Publication type:

Article

PRKAA1 predicts prognosis and is associated with immune characteristics in gastric cancer.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01176-z

By:

Chen, Yongyi;
Chen, Siyu;
Zhu, Jing;
Yang, Shaoxue;
Yu, Qiong;
Xu, Songxiao

Publication type:

Article

NEAT1-mediated miR-150-5p downregulation regulates b-catenin expression in OA chondrocytes.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01139-4

By:

Papathanasiou, Ioanna;
Balis, Charalampos;
Destounis, Dimitrios;
Mourmoura, Evanthia;
Tsezou, Aspasia

Publication type:

Article

Synonymous sites for accessibility around microRNA binding sites in bacterial spot and speck disease resistance genes of tomato.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01178-x

By:

Sophiarani, Yengkhom;
Chakraborty, Supriyo

Publication type:

Article

Rice WRKY13 TF protein binds to motifs in the promoter region to regulate downstream disease resistance-related genes.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01167-0

By:

Jimmy, John Lilly;
Karn, Rohit;
Kumari, Sweta;
Sruthilaxmi, Chitathoor Balasubramane;
Pooja, Singh;
Emerson, Isaac Arnold;
Babu, Subramanian

Publication type:

Article

Knockdown of LINC01087 inhibits gastric cancer malignant behavior by regulating the miR-135a-5p/CAAP1 axis.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01157-2

By:

Zhang, Kai-Xin;
Ding, Chuang;
Liu, Qiu-Hua;
Zhu, Dong-Ming

Publication type:

Article

Molecular characterization and in-depth genome analysis of Enterobacter sp. S-16.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01161-6

By:

Kumari, Kiran;
Sharma, Parva Kumar;
Shikha, Shweta;
Singh, Rajnish Prakash

Publication type:

Article

maT and mosquito transposons in cnidarians: evolutionary history and intraspecific differences.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01175-0

By:

Puzakov, Mikhail V.;
Puzakova, Lyudmila V.;
Shi, Shasha;
Cheresiz, Sergey V.

Publication type:

Article

Resveratrol plays an anti-fibrotic and anti-autophagy role by stimulating miR-192-5p expression in urethral fibrosis.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01173-2

By:

Lv, Jin;
Zhang, Rui;
Li, DaoYuan;
Liu, Yan

Publication type:

Article

Identification of genes governing resistance to PCN (Globodera rostochiensis) through transcriptome analysis in Solanum tuberosum.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01164-3

By:

Bairwa, Aarti;
Sood, Salej;
Bhardwaj, Vinay;
Rawat, Shashi;
Tamanna, Tamanna;
Siddappa, Sundaresha;
Venkatasalam, E.P.;
Dipta, Bhawna;
Sharma, Ashwani K.;
Kumar, Ashwani;
Singh, Baljeet;
Mhatre, Priyank H.;
Sharma, Sanjeev;
Kumar, Vinod

Publication type:

Article

Beyond green and red: unlocking the genetic orchestration of tomato fruit color and pigmentation.

Published in:

Functional & Integrative Genomics, 2023, v. 23, n. 3, p. 1, doi. 10.1007/s10142-023-01162-5

By:

Naeem, Muhammad;
Zhao, Weihua;
Ahmad, Naveed;
Zhao, Lingxia

Publication type:

Article