Works matching IS 13866338 AND DT 2007 AND VI 7

Results: 67

Prediction of Ubiquitin Proteins using Artificial Neural Networks, Hidden Markov Model and Support Vector Machines.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 559, doi. 10.3233/isi-2007-00328

By:

Jaiswal, Kunal

Publication type:

Article

Cell Interaction Knowledgebase: An Online Database for Innate Immune Cells, Cytokines and Chemokines.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 569, doi. 10.3233/isi-2007-00329

By:

Shu Chen;
Chinnaswamy, Arunkumar;
Biswas, Subhra K.;
Goryachev, Andrew B.;
Choon-Kong Yap;
Koi-Yau Lam;
Cheng-Pei Tay;
Hong-Sang Low;
Pokhilko, Alexandra;
Toh Da-Jun;
Mishra, Santosh K.

Publication type:

Article

The Use of Multiple Hierarchically Independent Gene Ontology Terms in Gene Function Prediction and Genome Annotation.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 575, doi. 10.3233/isi-2007-00330

By:

Kourmpetis, Yiannis A. I.;
Van Der Burgt, Ate;
Bink, Marco C. A. M.;
Ter Braak, Cajo J. F.;
Van Ham, Roeland C. H. J.

Publication type:

Article

Structural Considerations for Designing Adenosine Analogs as Selective Inhibitors of Trichomonas sp. Glyceraldehyde-3- Phosphate Dehydrogenase.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 583, doi. 10.3233/isi-2007-00331

By:

Kundu, Sangeeta;
Roy, Debjani

Publication type:

Article

PREDICTOR: A Web-Based Tool for the Prediction of Atomic Structure from Sequence for Double Helical DNA with up to 150 Base Pairs.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 595, doi. 10.3233/isi-2007-00332

By:

Farwer, Jochen;
Packer, Martin J.;
Hunter, Christopher A.

Publication type:

Article

Identification of Novel Genomic Islands Associated with Small RNAs.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 601, doi. 10.3233/isi-2007-00333

By:

Sridhar, Jayavel;
Rafi, Ziauddin Ahamed

Publication type:

Article

Self-Alignments to Detect Mutually Exclusive Exon Usage.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 613, doi. 10.3233/isi-2007-00334

By:

Stephan, Martin;
Möller, Friedrich;
Wiehe, Thomas;
Kleffe, Jürgen

Publication type:

Article

Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 623, doi. 10.3233/isi-2007-00335

By:

Euna Jeong;
Nagasaki, Masao;
Saito, Ayumu;
Miyano, Satoru

Publication type:

Article

CGHsweep: An Algorithm for Analyzing Chromosomal Aberrations in Genome Using aCGH Profiles.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 639, doi. 10.3233/isi-2007-00336

By:

Karmaker, Amitava;
Kwek, Stephen

Publication type:

Article

HBAT: A Complete Package for Analysing Strong and Weak Hydrogen Bonds in Macromolecular Crystal Structures.

Published in:

In Silico Biology, 2007, v. 7, n. 6, p. 651, doi. 10.3233/isi-2007-00337

By:

Tiwari, Abhishek;
Panigrahi, Sunil K.

Publication type:

Article

Positive Darwinian Selection on Crustacean Hyperglycemic Hormone (CHH) of the Green Shore Crab, Carcinus maenas.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 355, doi. 10.3233/isi-2007-00294

By:

Padhi, Abinash;
Verghese, Bindhu;
Otta, Subhendu K.;
Varghese, Binu;
Ramu, Karri

Publication type:

Article

Prediction of Neurotoxins Based on Their Function and Source.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 369, doi. 10.3233/isi-2007-00295

By:

Saha, Sudipto;
Raghava, Gajendra P.S.

Publication type:

Article

Genome-wide Prediction and Annotation of Burkholderia Pseudomallei AraC/XylS Family Transcription Regulator.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 389, doi. 10.3233/isi-2007-00296

By:

Boon-San Lim;
Chan-Eng Chong;
Zamrod, Zulkeflie;
Nathan, Sheila;
Mohamed, Rahmah

Publication type:

Article

BRM-Parser: A Tool for Comprehensive Analysis of BLAST and RepeatMasker Results.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 399, doi. 10.3233/isi-2007-00297

By:

Bajpai, Anjali;
Sridhar, Settu;
Reddy, Hemakumar M.;
Jesudasan, Rachel A.

Publication type:

Article

BTXpred: Prediction of Bacterial Toxins.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 405, doi. 10.3233/isi-2007-00298

By:

Saha, Sudipto;
Raghava, Gajendra P.S.

Publication type:

Article

Differential Genome Analyses of Metabolic Enzymes in Pseudomonas aeruginosa for Drug Target Identification.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 453, doi. 10.3233/isi-2007-00320

By:

Perumal, Deepak;
Chu Sing Lim;
Sakharkar, Kishore R.;
Sakharkar, Meena K.

Publication type:

Article

In Silico Analysis of Voltage-gated Sodium Channel in Relation to DDT Resistance in Vector Mosquitoes.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 413, doi. 10.3233/isi-2007-00299

By:

Rajesh, Rengaraj;
Gunasekaran, Kasinathan;
Muthukumaravel, Subramanian;
Balaraman, Kothandapani;
Jambulingam, Purusothaman

Publication type:

Article

RNAmodel Web Server: Modeling Classic Attenuation in Bacteria.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 285

By:

Rubanov, Lev;
Lyubetsky, Vassily

Publication type:

Article

Quality Assessment of the Affymetrix U133A&B Probesets by Target Sequence Mapping and Expression Data Analysis.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 241

By:

Orlov, Yuriy L.;
Jiangtao Zhou;
Lipovich, Leonard;
Shahab, Atif;
Kuznetsov, Vladimir A.

Publication type:

Article

Integration of CellDesigner and SABIO-RK.

Published in:

In Silico Biology, 2007, v. 7, p. S81

By:

Akira Funahashi;
Akiya Jouraku;
Yukiko Matsuoka;
Hiroaki Kitano

Publication type:

Article

Evaluation of Codon Bias Perspectives in Phage Therapy of Mycobacterium tuberculosis by Multivariate Analysis.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 423, doi. 10.3233/isi-2007-00310

By:

Ranjan, Ashutosh;
Vidyarthi, Ambrish Sharan;
Poddar, Raju

Publication type:

Article

Clustering Formal Concepts to Discover Biologically Relevant Knowledge from Gene Expression Data.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 467, doi. 10.3233/isi-2007-00321

By:

Blachon, Sylvain;
Pensa, Ruggero G.;
Besson, Jérémy;
Robardet, Céline;
Boulicaut, Jean-François;
Gandrillon, Olivier

Publication type:

Article

Clustering Gene Expression Data Using Graph Separators.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 433, doi. 10.3233/isi-2007-00319

By:

Kaba, Bangaly;
Pinet, Nicolas;
Lelandais, Gaëlle;
Sigayret, Alain;
Berry, Anne

Publication type:

Article

Integration of Enzyme Kinetic Data from Various Sources.

Published in:

In Silico Biology, 2007, v. 7, p. S73

By:

Borger, Simon;
Uhlendorf, Jannis;
Helbig, Anselm;
Liebermeister, Wolfram

Publication type:

Article

Usage of Reaction Kinetics Data Stored in Databases -- A Modeler's Point of View.

Published in:

In Silico Biology, 2007, v. 7, p. S65

By:

Kummer, Ursula

Publication type:

Article

In Silico Identification and Characterization of mRNA-Like Noncoding Transcripts in Medicago truncatula.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 485, doi. 10.3233/isi-2007-00322

By:

Jiayu Wen;
Parker, Brian J.;
Weiller, Georg F.

Publication type:

Article

The CAI Analyser Package: Inferring Gene Expressivity from Raw Genomic Data.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 507, doi. 10.3233/isi-2007-00323

By:

Ramazzotti, Matteo;
Brilli, Matteo;
Fani, Renato;
Manao, Giampaolo;
Degl'Innocenti, Donatella

Publication type:

Article

Correlation Between Gene Silencing Activity and Structural Features of Antisense Oligodeoxynucleotides and Target RNA.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 527, doi. 10.3233/isi-2007-00324

By:

Li Liao;
Zhongwei Li

Publication type:

Article

BETTY: Prediction of beta;-Strand Type from Sequence.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 535, doi. 10.3233/isi-2007-00325

By:

Zimmermann, Olav;
Wang, Longhui;
Hansmann, Ulrich H.E.

Publication type:

Article

PGV – Prokaryotic Genome Viewer.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 543, doi. 10.3233/isi-2007-00326

By:

Marla, Soma;
Singh, Vinay Kumar

Publication type:

Article

Analysis of Codon Usage Patterns and Predicted Highly Expressed Genes for Six Phytopathogenic Xanthomonas Genomes Shows a High Degree of Conservation.

Published in:

In Silico Biology, 2007, v. 7, n. 4/5, p. 547, doi. 10.3233/isi-2007-00327

By:

Sen, Gargi;
Sur, Saubashya;
Bose, Debadin;
Mondal, Uttam;
Furnholm, Teal;
Bothra, Asim;
Tisa, Louis;
Sen, Arnab

Publication type:

Article

Simulation of Coevolution in Community by Using the "Evolutionary Constructor" Program.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 261

By:

Lashin, Sergey A.;
Suslov, Valentin V.;
Kolchanov, Nikolay A.;
Matushkin, Yury G.

Publication type:

Article

Fifth International Conference on Bioinformatics of Genome Regulation and Structure-BGRS'2006.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 239

By:

Rodin, Sergei N.;
Kolchanov, Nikolay A.

Publication type:

Article

Genetic Flows in a Structured One-Dimensional Population: Simulation and Real Data on Baikalian Polychaetes M. Godlewskii.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 277

By:

Bukin, Jury Sergeevich;
Pudovkina, Tatyana Anatoljevna;
Sherbakov, Dmitry Jurjevich;
Sitnikova, Tatyana Jakovlevna

Publication type:

Article

Translation of Both Complementary Strands Might Govern Early Evolution of the Genetic Code.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 309

By:

Rodin, Andrei S.;
Rodin, Sergei N.

Publication type:

Article

Phylogenetic Analysis of the p53 and p63/p73 Gene Families.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 319

By:

Pintus, Sergey S.;
Fomin, Eduard S.;
Oshurkov, Ivan S.;
Ivanisenko, Vladimir A.

Publication type:

Article

The Evolution of the Hh-Signaling Pathway Genes: A Computer-Assisted Study.

Published in:

In Silico Biology, 2007, v. 7, n. 3, p. 333

By:

Gunbin, Konstantin V.;
Afonnikov, Dmitrij A.;
Kolchanov, Nikolay A.

Publication type:

Article

Good Publication Practice As A Prerequisite for Comparable Enzyme Data?

Published in:

In Silico Biology, 2007, v. 7, p. S57

By:

Kettner, Carsten

Publication type:

Article

"Good Annotation Practice" for Chemical Data in Biology.

Published in:

In Silico Biology, 2007, v. 7, p. S45

By:

Degtyarenko, Kirill;
Ennis, Marcus;
Garavelli, John S.

Publication type:

Article

Storing and Annotating of Kinetic Data.

Published in:

In Silico Biology, 2007, v. 7, p. S37

By:

Rojas, Isabel;
Golebiewski, Martin;
Kania, Renate;
Krebs, Olga;
Mir, Saqib;
Weidemann, Andreas;
Wittig, Ulrike

Publication type:

Article

Data and Model Integration Using JWS Online.

Published in:

In Silico Biology, 2007, v. 7, p. S27

By:

van Gend, Carel;
Conradie, Riaan;
du Preez, Franco B.;
Snoep, Jacky L.

Publication type:

Article

Integrating Pathway Data for Systems Pathology.

Published in:

In Silico Biology, 2007, v. 7, p. S17

By:

Wingender, Edgar;
Hogan, Jennifer;
Schacherer, Frank;
Potapov, Anatolij P.;
Kel-Margoulis, Olga

Publication type:

Article

Role of Wet Experiment Design in Data Generation: From in V ivo to in Silico and Back.

Published in:

In Silico Biology, 2007, v. 7, p. S3

By:

Canovas, Manuel;
Bernal, Vicente;
Sevilla, Angel;
Iborra, Jose L.

Publication type:

Article

Workshop on "Storage and Annotation of Reaction Kinetics Data", Villa Bosch in Heidelberg, May 21-23, 2007.

Published in:

In Silico Biology, 2007, v. 7, p. S1

By:

Rojas, Isabel;
Wittig, Ulrike

Publication type:

Article

Elementary Mode Analysis to Study the Preculturing Effect on the Metabolic State of Lactobacillus rhamnosus During Growth on Mixed Substrates.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 123, doi. 10.3233/isb-00282

By:

Gayen, Kalyan;
Gupta, Manish;
Venkatesh, Kareenhalli V.

Publication type:

Article

eXpanda: An Integrated Platform for Network Analysis and Visualization.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 141, doi. 10.3233/isb-00283

By:

Negishi, Yoshiteru;
Nakamura, Hiroyuki;
Yachie, Nozomu;
Saito, Rintaro;
Tomita, Masaru

Publication type:

Article

DomainDraw: A Macromolecular Feature Drawing Program.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 145, doi. 10.3233/isb-00284

By:

Fink, J. Lynn;
Hamilton, Nicholas

Publication type:

Article

Deep Metazoan Phylogeny.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 151, doi. 10.3233/isb-00285

By:

Gerlach, Daniel;
Wolf, Matthias;
Dandekar, Thomas;
Müller, Tobias;
Pokorny, Andreas;
Rahmann, Sven

Publication type:

Article

Frameshift Signals in Genes Associated with the Circular Code.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 155, doi. 10.3233/isb-00286

By:

Ahmed, Ahmed;
Frey, Gabriel;
Michel, Christian J.

Publication type:

Article

Efficient Shape Descriptors for Feature Extraction in 3D Protein Structures.

Published in:

In Silico Biology, 2007, v. 7, n. 2, p. 169, doi. 10.3233/isb-00287

By:

Ranganath, Aruna;
Shet, K. Chandra Shekar;
Vidyavathi, Nagardone

Publication type:

Article