Works matching IS 13674803 AND DT 2025 AND VI 41 AND IP 1
Results: 60
TPepRet: a deep learning model for characterizing T-cell receptors–antigen binding patterns.
- Published in:
- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf022
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- Article
FlexLMM: a Nextflow linear mixed model framework for GWAS.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf021
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- Article
PredCMB: predicting changes in microbial metabolites based on the gene–metabolite network analysis of shotgun metagenome data.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf020
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- Article
DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf019
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- Article
EnrichRBP: an automated and interpretable computational platform for predicting and analysing RNA-binding protein events.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf018
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- Article
Funmap: integrating high-dimensional functional annotations to improve fine-mapping.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf017
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- Article
PHIStruct: improving phage–host interaction prediction at low sequence similarity settings using structure-aware protein embeddings.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf016
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- Article
nipalsMCIA: flexible multi-block dimensionality reduction in R via nonlinear iterative partial least squares.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf015
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- Article
A semi-supervised fracture-attention model for segmenting tubular objects with improved topological connectivity.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf013
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- Article
BetaAlign: a deep learning approach for multiple sequence alignment.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf009
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- Article
Bayesian gene set benchmark dose estimation for "omic" responses.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf008
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- Article
Proteoform identification and quantification based on alignment graphs.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf007
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- Article
Nanopore decoding with speed and versatility for data storage.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf006
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- Article
PCA-based spatial domain identification with state-of-the-art performance.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf005
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- Article
RNA-TorsionBERT: leveraging language models for RNA 3D torsion angles prediction.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf004
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- Publication type:
- Article
Semblans: automated assembly and processing of RNA-seq data.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf003
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- Article
Improving generalizability of drug–target binding prediction by pre-trained multi-view molecular representations.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btaf002
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- Article
Expression of Concern: Cleavage-Stage Embryo Segmentation Using SAM-Based Dual Branch Pipeline: Development and Evaluation with the CleavageEmbryo Dataset.
- Published in:
- 2025
- Publication type:
- Correction Notice
Crypt4GH-JS: securely storing sensitive data online with client-side encryption.
- Published in:
- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae763
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- Article
Transcription factor prediction using protein 3D secondary structures.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae762
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- Article
Open Chrono-Morph Viewer: visualize big bioimage time series containing heterogeneous volumes.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae761
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- Article
MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae760
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- Article
SampleExplorer: using language models to discover relevant transcriptome data.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae759
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- Publication type:
- Article
VarNMF: non-negative probabilistic factorization with source variation.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae758
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- Article
Fast and exact gap-affine partial order alignment with POASTA.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae757
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- Article
FuncFetch: an LLM-assisted workflow enables mining thousands of enzyme–substrate interactions from published manuscripts.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae756
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- Article
Gretl—variation GRaph Evaluation TooLkit.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae755
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- Article
QuICSeedR: an R package for analyzing fluorophore-assisted seed amplification assay data.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae752
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- Article
Correction to: Damsel: analysis and visualisation of DamID sequencing in R.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae753
- Publication type:
- Article
Rnalib: a Python library for custom transcriptomics analyses.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae751
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- Article
Heterogeneous entity representation for medicinal synergy prediction.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae750
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- Publication type:
- Article
Ligand identification in CryoEM and X-ray maps using deep learning.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae749
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- Article
CParty: hierarchically constrained partition function of RNA pseudoknots.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae748
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- Article
NLSDeconv: an efficient cell-type deconvolution method for spatial transcriptomics data.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae747
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- Article
The scalable variant call representation: enabling genetic analysis beyond one million genomes.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae746
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- Article
CryptoBench: cryptic protein–ligand binding sites dataset and benchmark.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae745
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- Publication type:
- Article
End-to-end simulation of nanopore sequencing signals with feed-forward transformers.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae744
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- Article
The Naïve Bayes classifier++ for metagenomic taxonomic classification—query evaluation.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae743
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- Publication type:
- Article
CrossIsoFun: predicting isoform functions using the integration of multi-omics data.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae742
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- Article
MapTurns: mapping the structure, H-bonding, and contexts of beta turns in proteins.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae741
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- Article
DPAM-AI: a domain parser for AlphaFold models powered by artificial intelligence.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae740
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- Publication type:
- Article
The FunCoup Cytoscape App: multi-species network analysis and visualization.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae739
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- Article
DiffPaSS—high-performance differentiable pairing of protein sequences using soft scores.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae738
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- Article
A hypercubic Mk model framework for capturing reversibility in disease, cancer, and evolutionary accumulation modelling.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae737
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- Publication type:
- Article
A near-tight lower bound on the density of forward sampling schemes.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae736
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- Article
SCARAP: scalable cross-species comparative genomics of prokaryotes.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae735
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- Publication type:
- Article
SuperSpot: coarse graining spatial transcriptomics data into metaspots.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae734
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- Publication type:
- Article
m5c-iEnsem: 5-methylcytosine sites identification through ensemble models.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae722
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- Article
Autoencoder-based phenotyping of ophthalmic images highlights genetic loci influencing retinal morphology and provides informative biomarkers.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae732
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- Publication type:
- Article
Modeling multi-stage disease progression and identifying genetic risk factors via a novel collaborative learning method.
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- Bioinformatics, 2025, v. 41, n. 1, p. 1, doi. 10.1093/bioinformatics/btae728
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- Publication type:
- Article