Works matching IS 13674803 AND DT 2024 AND VI 40
Results: 745
Identification and annotation of centromeric hypomethylated regions with CDR-Finder.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae733
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GUEST: an R package for handling estimation of graphical structure and multiclassification for error-prone gene expression data.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae731
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A BLAST from the past: revisiting blastp's E-value.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae729
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JARVIS3: an efficient encoder for genomic data.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae725
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HBFormer: a single-stream framework based on hybrid attention mechanism for identification of human-virus protein–protein interactions.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae724
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spread.gl: visualizing pathogen dispersal in a high-performance browser application.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae721
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Panacus: fast and exact pangenome growth and core size estimation.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae720
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HAlign 4: a new strategy for rapidly aligning millions of sequences.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae718
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BWT construction and search at the terabase scale.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae717
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VSS-Hi-C: variance-stabilized signals for chromatin contacts.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae715
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OpenVariant: a toolkit to parse and operate multiple input file formats.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae714
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ViraLM: empowering virus discovery through the genome foundation model.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae704
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STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae713
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easySCF: a tool for enhancing interoperability between R and Python for efficient single-cell data analysis.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae710
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Virtual tissue expression analysis.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae709
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Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae700
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Fast polypharmacy side effect prediction using tensor factorization.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae706
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Phasing nanopore genome assembly by integrating heterozygous variations and Hi-C data.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae712
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OneSC: a computational platform for recapitulating cell state transitions.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae703
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Sparse Neighbor Joining: rapid phylogenetic inference using a sparse distance matrix.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae701
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lefser: implementation of metagenomic biomarker discovery tool, LEfSe, in R.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae707
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FastTENET: an accelerated TENET algorithm based on manycore computing in Python.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae699
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Polyphonia: detecting inter-sample contamination in viral genomic sequencing data.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae698
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PhosX: data-driven kinase activity inference from phosphoproteomics experiments.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae697
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Mutual information for detecting multi-class biomarkers when integrating multiple bulk or single-cell transcriptomic studies.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae696
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Damsel: analysis and visualisation of DamID sequencing in R.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae695
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Accurate and transferable drug–target interaction prediction with DrugLAMP.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae693
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DrugRepPT: a deep pretraining and fine-tuning framework for drug repositioning based on drug's expression perturbation and treatment effectiveness.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae692
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STRPsearch: fast detection of structured tandem repeat proteins.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae690
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Sensitivities in protein allocation models reveal distribution of metabolic capacity and flux control.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae691
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DeepDR: a deep learning library for drug response prediction.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae688
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Tiberius: end-to-end deep learning with an HMM for gene prediction.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae685
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Dynamic modelling of signalling pathways when ordinary differential equations are not feasible.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae683
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Facilitating phenotyping from clinical texts: the medkit library.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae681
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FAPM: functional annotation of proteins using multimodal models beyond structural modeling.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae680
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DeepRSMA: a cross-fusion-based deep learning method for RNA–small molecule binding affinity prediction.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae678
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LmRaC: a functionally extensible tool for LLM interrogation of user experimental results.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae679
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Predicting the subcellular location of prokaryotic proteins with DeepLocPro.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae677
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CVR-BBI: an open-source VR platform for multi-user collaborative brain to brain interfaces.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae676
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Improved prediction of post-translational modification crosstalk within proteins using DeepPCT.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae675
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AltGosling: automatic generation of text descriptions for accessible genomics data visualization.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae670
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Micro-DeMix: a mixture beta-multinomial model for investigating the heterogeneity of the stool microbiome compositions.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae667
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FEHAT: efficient, large scale and automated heartbeat detection in Medaka fish embryos.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae664
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Pod5Viewer: a GUI for inspecting raw nanopore sequencing data.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae665
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Afpdb: an efficient structure manipulation package for AI protein design.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae654
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Knowledge mining of brain connectivity in massive literature based on transfer learning.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae648
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Optimizing multi-omics data imputation with NMF and GAN synergy.
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- Bioinformatics, 2024, v. 40, n. 11, p. 1, doi. 10.1093/bioinformatics/btae674
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Ranking antibody binding epitopes and proteins across samples from whole proteome tiled linear peptides.
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- Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae637
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APAtizer: a tool for alternative polyadenylation analysis of RNA-Seq data.
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- Bioinformatics, 2024, v. 40, n. 11, p. 1, doi. 10.1093/bioinformatics/btae689
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Protein structure alignment by Reseek improves sensitivity to remote homologs.
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- Bioinformatics, 2024, v. 40, n. 11, p. 1, doi. 10.1093/bioinformatics/btae687
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