Works matching IS 13674803 AND DT 2023 AND VI 39 AND IP 8
Results: 71
VAPEX: an interactive web server for the deep exploration of natural virus and phage genomes.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad528
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- Article
DEP2: an upgraded comprehensive analysis toolkit for quantitative proteomics data.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad526
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- Article
libSBOLj3: a graph-based library for design and data exchange in synthetic biology.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad525
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Coherent pathway enrichment estimation by modeling inter-pathway dependencies using regularized regression.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad522
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- Article
Pretrained transformer models for predicting the withdrawal of drugs from the market.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad519
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- Article
crosshap: R package for local haplotype visualization for trait association analysis.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad518
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- Article
Gonomics: uniting high performance and readability for genomics with Go.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad516
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- Article
dRFEtools: dynamic recursive feature elimination for omics.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad513
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- Article
Predicted structural proteome of Sphagnum divinum and proteome-scale annotation.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad511
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- Article
AARDVARK: an automated reversion detector for variants affecting resistance kinetics.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad509
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- Article
StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad506
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- Article
scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad505
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- Article
Predicting thermostability difference between cellular protein orthologs.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad504
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- Article
CMMS-GCL: cross-modality metabolic stability prediction with graph contrastive learning.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad503
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- Article
Protein–ligand binding affinity prediction exploiting sequence constituent homology.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad502
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- Article
Anomaly detection in mixed high-dimensional molecular data.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad501
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Correction to: Joint registration of multiple point clouds for fast particle fusion in localization microscopy.
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- 2023
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- Correction Notice
MLNGCF: circRNA–disease associations prediction with multilayer attention neural graph-based collaborative filtering.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad499
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- Article
Adjusting for gene-specific covariates to improve RNA-seq analysis.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad498
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- Article
Few-shot biomedical named entity recognition via knowledge-guided instance generation and prompt contrastive learning.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad496
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CoCoNat: a novel method based on deep learning for coiled-coil prediction.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad495
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- Article
Enhancing cryo-EM maps with 3D deep generative networks for assisting protein structure modeling.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad494
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- Article
ProtoCell4P: an explainable prototype-based neural network for patient classification using single-cell RNA-seq.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad493
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- Article
NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad492
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- Article
Bayesian multitask learning for medicine recommendation based on online patient reviews.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad491
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- Article
Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad490
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- Article
PACT: a pipeline for analysis of circulating tumor DNA.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad489
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- Article
SHEPHARD: a modular and extensible software architecture for analyzing and annotating large protein datasets.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad488
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- Article
Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad487
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- Article
NCOurd: modelling length distributions of NCO events and gene conversion tracts.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad485
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- Article
Prediction of pathogenic single amino acid substitutions using molecular fragment descriptors.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad484
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- Article
KOunt: a reproducible KEGG orthologue abundance workflow.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad483
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- Article
XGDAG: explainable gene–disease associations via graph neural networks.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad482
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- Article
demuxmix: demultiplexing oligonucleotide-barcoded single-cell RNA sequencing data with regression mixture models.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad481
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- Article
Short-read aligner performance in germline variant identification.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad480
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- Article
BEENE: deep learning-based nonlinear embedding improves batch effect estimation.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad479
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- Article
Cancer drug response prediction with surrogate modeling-based graph neural architecture search.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad478
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- Article
USNAP: fast unique dense region detection and its application to lung cancer.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad477
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- Article
TALAIA: a 3D visual dictionary for protein structures.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad476
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- Article
MIX-TPI: a flexible prediction framework for TCR–pMHC interactions based on multimodal representations.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad475
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- Article
iCpG-Pos: an accurate computational approach for identification of CpG sites using positional features on single-cell whole genome sequence data.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad474
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- Article
PCGAN: a generative approach for protein complex identification from protein interaction networks.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad473
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- Publication type:
- Article
FGCNSurv: dually fused graph convolutional network for multi-omics survival prediction.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad472
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- Article
Exploitation of surrogate variables in random forests for unbiased analysis of mutual impact and importance of features.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad471
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- Article
ggpicrust2: an R package for PICRUSt2 predicted functional profile analysis and visualization.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad470
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- Article
Investigating the human and nonobese diabetic mouse MHC class II immunopeptidome using protein language modeling.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad469
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- Article
BERTrand—peptide:TCR binding prediction using Bidirectional Encoder Representations from Transformers augmented with random TCR pairing.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad468
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- Article
ShinyBioHEAT: an interactive shiny app to identify phenotype driver genes in E.coli and B.subtilis.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad467
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- Article
TranSyT, an innovative framework for identifying transport systems.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad466
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- Article
Dynamic applicability domain (dAD): compound–target binding affinity estimates with local conformal prediction.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad465
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- Publication type:
- Article