Works matching IS 13674803 AND DT 2023 AND VI 39 AND IP 2
Results: 45
LDmat: efficiently queryable compression of linkage disequilibrium matrices.
- Published in:
- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad092
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- Article
Literature-based discovery: addressing the issue of the subpar evaluation methodology.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad090
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- Article
DBDIpy: a Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad088
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- Article
A novel strategy for dynamic modeling of genome-scale interaction networks.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad079
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- Article
Correction to: HOMELETTE: a unified interface to homology modelling software.
- Published in:
- 2023
- Publication type:
- Correction Notice
DaTeR: error-correcting phylogenetic chronograms using relative time constraints.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad084
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- Article
APL@voro—interactive visualization and analysis of cell membrane simulations.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad083
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- Article
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad081
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- Article
The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad080
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- Article
Multimodal representation learning for predicting molecule–disease relations.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad085
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- Article
ComMap: a software to perform large-scale structure-based mapping for cross-linking mass spectrometry.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad077
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- Article
Patpat: a public proteomics dataset search framework.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad076
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- Article
scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad075
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- Article
Optimal gap-affine alignment in O(s) space.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad074
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- Article
wpLogicNet: logic gate and structure inference in gene regulatory networks.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad072
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- Article
WMDS.net: a network control framework for identifying key players in transcriptome programs.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad071
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- Publication type:
- Article
A unified approach to protein domain parsing with inter-residue distance matrix.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad070
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- Article
PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad068
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- Publication type:
- Article
A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad067
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- Article
NMRtist: an online platform for automated biomolecular NMR spectra analysis.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad066
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- Article
Benchmarking tools for a priori identifiability analysis.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad065
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- Publication type:
- Article
PyGenePlexus: a Python package for gene discovery using network-based machine learning.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad064
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- Article
Efficient penalized generalized linear mixed models for variable selection and genetic risk prediction in high-dimensional data.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad063
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- Article
The adapted Activity-By-Contact model for enhancer–gene assignment and its application to single-cell data.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad062
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- Article
GMWI-webtool: a user-friendly browser application for assessing health through metagenomic gut microbiome profiling.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad061
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- Publication type:
- Article
TIVAN-indel: a computational framework for annotating and predicting non-coding regulatory small insertions and deletions.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad060
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- Article
Potent antibiotic design via guided search from antibacterial activity evaluations.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad059
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- Article
MS1Connect: a mass spectrometry run similarity measure.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad058
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- Article
How to optimally sample a sequence for rapid analysis.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad057
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- Article
MFR-DTA: a multi-functional and robust model for predicting drug–target binding affinity and region.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad056
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- Article
Binding peptide generation for MHC Class I proteins with deep reinforcement learning.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad055
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- Article
BLTSA: pseudotime prediction for single cells by branched local tangent space alignment.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad054
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- Publication type:
- Article
Adversarial dense graph convolutional networks for single-cell classification.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad043
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- Article
CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells.
- Published in:
- 2023
- Publication type:
- Correction Notice
CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad053
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- Article
CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad049
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- Publication type:
- Article
Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad046
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- Publication type:
- Article
NetProphet 3: a machine learning framework for transcription factor network mapping and multi-omics integration.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad038
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- Article
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad052
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- Publication type:
- Article
Differential co-expression network analysis with DCoNA reveals isomiR targeting aberrations in prostate cancer.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad051
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- Publication type:
- Article
Mapache: a flexible pipeline to map ancient DNA.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad028
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- Publication type:
- Article
Dealing with dimensionality: the application of machine learning to multi-omics data.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad021
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- Publication type:
- Article
Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad018
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- Article
SLGNN: synthetic lethality prediction in human cancers based on factor-aware knowledge graph neural network.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btad015
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- Publication type:
- Article
NIAPU: network-informed adaptive positive-unlabeled learning for disease gene identification.
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- Bioinformatics, 2023, v. 39, n. 2, p. 1, doi. 10.1093/bioinformatics/btac848
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- Publication type:
- Article