Works matching IS 13674803 AND DT 2023 AND VI 39 AND IP 11
Results: 70
PiDeeL: metabolic pathway-informed deep learning model for survival analysis and pathological classification of gliomas.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad684
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- Article
regioneReloaded: evaluating the association of multiple genomic region sets.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad704
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IDESS: a toolbox for identification and automated design of stochastic gene circuits.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad682
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FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad674
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Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad703
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pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad711
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Correction to: HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition.
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- 2023
- Publication type:
- Correction Notice
gmcoda: Graphical model for multiple compositional vectors in microbiome studies.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad700
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Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad702
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Examining DNA breathing with pyDNA-EPBD.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad699
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BELB: a biomedical entity linking benchmark.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad698
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Modified RNAs and predictions with the ViennaRNA Package.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad696
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RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad695
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Correction to: Reducing cost in DNA-based data storage by sequence analysis-aided soft information decoding of variable-length reads.
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- 2023
- Publication type:
- Correction Notice
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad690
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- Article
Molecular generation strategy and optimization based on A2C reinforcement learning in de novo drug design.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad693
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- Article
An evolution strategy approach for the balanced minimum evolution problem.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad660
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- Article
Integration of multiple terminology bases: a multi-view alignment method using the hierarchical structure.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad689
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CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad687
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- Article
BELMM: Bayesian model selection and random walk smoothing in time-series clustering.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad686
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- Article
An automated model annotation system (AMAS) for SBML models.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad658
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- Article
LexicHash: sequence similarity estimation via lexicographic comparison of hashes.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad652
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DOSE-L1000: unveiling the intricate landscape of compound-induced transcriptional changes.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad683
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ReGeNNe: genetic pathway-based deep neural network using canonical correlation regularizer for disease prediction.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad679
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- Article
AFRbase: a database of protein mutations responsible for antifungal resistance.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad677
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Exploiting the structure of biochemical pathways to investigate dynamical properties with neural networks for graphs.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad678
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- Article
PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad676
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- Article
PyPCN: protein contact networks in PyMOL.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad675
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MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad651
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- Article
EMNGly: predicting N-linked glycosylation sites using the language models for feature extraction.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad650
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hipFG: high-throughput harmonization and integration pipeline for functional genomics data.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad673
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- Article
aPEAR: an R package for autonomous visualization of pathway enrichment networks.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad672
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PROSTATA: a framework for protein stability assessment using transformers.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad671
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Inferring delays in partially observed gene regulation processes.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad670
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Correction to: CITEdb: a manually curated database of cell–cell interactions in human.
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- 2023
- Publication type:
- Correction Notice
Compositional analysis of microbiome data using the linear decomposition model (LDM).
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad668
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- Article
An integrative pipeline for circular RNA quantitative trait locus discovery with application in human T cells.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad667
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- Article
Open MoA: revealing the mechanism of action (MoA) based on network topology and hierarchy.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad666
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- Article
RNA interaction format: a general data format for RNA interactions.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad665
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- Article
ORI-Explorer: a unified cell-specific tool for origin of replication sites prediction by feature fusion.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad664
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- Article
TT3D: Leveraging precomputed protein 3D sequence models to predict protein–protein interactions.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad663
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- Article
SSLpheno: a self-supervised learning approach for gene–phenotype association prediction using protein–protein interactions and gene ontology data.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad662
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- Publication type:
- Article
Program for Integration and Rapid Analysis of Mass Isotopomer Distributions (PIRAMID).
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad661
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- Publication type:
- Article
dsRID: in silico identification of dsRNA regions using long-read RNA-seq data.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad649
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- Article
ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad659
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- Article
oggmap: a Python package to extract gene ages per orthogroup and link them with single-cell RNA data.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad657
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- Publication type:
- Article
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad655
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- Article
Expanded utility of the R package, qgg, with applications within genomic medicine.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad656
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- Publication type:
- Article
Automated exploitation of deep learning for cancer patient stratification across multiple types.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad654
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- Publication type:
- Article
Hunting down zinc(II)-binding sites in proteins with distance matrices.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad653
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- Article