Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 9
Results: 54
Correction to: GSpace: an exact coalescence simulator of recombining genomes under isolation by distance.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2674, doi. 10.1093/bioinformatics/btac193
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- Article
Correction to: ORFLine: a bioinformatic pipeline to prioritize small open reading frames identifies candidate secreted small proteins from lymphocytes.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2673, doi. 10.1093/bioinformatics/btac162
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LOCAN: a python library for analyzing single-molecule localization microscopy data.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2670, doi. 10.1093/bioinformatics/btac160
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- Article
PANPROVA: pangenomic prokaryotic evolution of full assemblies.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2631, doi. 10.1093/bioinformatics/btac158
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RevUP: an online scoring system for regulatory variants implicated in rare diseases.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2664, doi. 10.1093/bioinformatics/btac157
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HiCARN: resolution enhancement of Hi-C data using cascading residual networks.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2414, doi. 10.1093/bioinformatics/btac156
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BridgeDPI: a novel Graph Neural Network for predicting drug–protein interactions.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2571, doi. 10.1093/bioinformatics/btac155
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- Article
DeepREAL: a deep learning powered multi-scale modeling framework for predicting out-of-distribution ligand-induced GPCR activity.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2561, doi. 10.1093/bioinformatics/btac154
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PathwAX II: network-based pathway analysis with interactive visualization of network crosstalk.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2659, doi. 10.1093/bioinformatics/btac153
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GenRisk: a tool for comprehensive genetic risk modeling.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2651, doi. 10.1093/bioinformatics/btac152
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- Article
AbDiver: a tool to explore the natural antibody landscape to aid therapeutic design.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2628, doi. 10.1093/bioinformatics/btac151
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- Article
CellWalkR: an R package for integrating and visualizing single-cell and bulk data to resolve regulatory elements.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2621, doi. 10.1093/bioinformatics/btac150
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- Article
NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2648, doi. 10.1093/bioinformatics/btac149
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- Article
Heterogeneous graph embedding model for predicting interactions between TF and target gene.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2554, doi. 10.1093/bioinformatics/btac148
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- Article
GraphGONet: a self-explaining neural network encapsulating the Gene Ontology graph for phenotype prediction on gene expression.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2504, doi. 10.1093/bioinformatics/btac147
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- Article
Variomes: a high recall search engine to support the curation of genomic variants.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2595, doi. 10.1093/bioinformatics/btac146
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- Article
spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2645, doi. 10.1093/bioinformatics/btac145
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- Article
Evitar: designing anti-viral RNA therapies against future RNA viruses.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2437, doi. 10.1093/bioinformatics/btac144
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- Article
Bayesian method to cluster single-cell RNA sequencing data using copy number alterations.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2512, doi. 10.1093/bioinformatics/btac143
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- Article
scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2642, doi. 10.1093/bioinformatics/btac141
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- Article
JIND: joint integration and discrimination for automated single-cell annotation.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2488, doi. 10.1093/bioinformatics/btac140
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- Article
MultiBaC: an R package to remove batch effects in multi-omic experiments.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2657, doi. 10.1093/bioinformatics/btac132
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Transgene-design: a web application for the design of mammalian transgenes.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2626, doi. 10.1093/bioinformatics/btac139
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BWA-MEME: BWA-MEM emulated with a machine learning approach.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2404, doi. 10.1093/bioinformatics/btac137
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- Article
fastISM: performant in silico saturation mutagenesis for convolutional neural networks.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2397, doi. 10.1093/bioinformatics/btac135
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- Article
HAMdetector: a Bayesian regression model that integrates information to detect HLA-associated mutations.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2428, doi. 10.1093/bioinformatics/btac134
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Modeling multi-scale data via a network of networks.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2544, doi. 10.1093/bioinformatics/btac133
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- Article
ensemble approach to predict binding hotspots in protein–RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2452, doi. 10.1093/bioinformatics/btac138
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- Article
Supervised capacity preserving mapping: a clustering guided visualization method for scRNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2496, doi. 10.1093/bioinformatics/btac131
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Phitest for analyzing the homogeneity of single-cell populations.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2639, doi. 10.1093/bioinformatics/btac130
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COVID-19 Spread Mapper: a multi-resolution, unified framework and open-source tool.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2661, doi. 10.1093/bioinformatics/btac129
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- Article
SomaticSiMu: a mutational signature simulator.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2619, doi. 10.1093/bioinformatics/btac128
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- Article
To rarefy or not to rarefy: robustness and efficiency trade-offs of rarefying microbiome data.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2389, doi. 10.1093/bioinformatics/btac127
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StAmP-DB: a platform for structures of polymorphic amyloid fibril cores.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2636, doi. 10.1093/bioinformatics/btac126
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- Article
BamToCov: an efficient toolkit for sequence coverage calculations.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2617, doi. 10.1093/bioinformatics/btac125
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- Article
POIBM: batch correction of heterogeneous RNA-seq datasets through latent sample matching.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2474, doi. 10.1093/bioinformatics/btac124
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Multi-scale deep learning for the imbalanced multi-label protein subcellular localization prediction based on immunohistochemistry images.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2602, doi. 10.1093/bioinformatics/btac123
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- Article
SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2536, doi. 10.1093/bioinformatics/btac122
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- Article
localpdb—a Python package to manage protein structures and their annotations.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2633, doi. 10.1093/bioinformatics/btac121
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- Article
TRScore: a 3D RepVGG-based scoring method for ranking protein docking models.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2444, doi. 10.1093/bioinformatics/btac120
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- Article
CobraMod: a pathway-centric curation tool for constraint-based metabolic models.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2654, doi. 10.1093/bioinformatics/btac119
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- Article
Topological approximate Bayesian computation for parameter inference of an angiogenesis model.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2529, doi. 10.1093/bioinformatics/btac118
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- Article
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2519, doi. 10.1093/bioinformatics/btac117
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- Article
TSAFinder: exhaustive tumor-specific antigen detection with RNAseq.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2422, doi. 10.1093/bioinformatics/btac116
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- Article
µProteInS—a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2612, doi. 10.1093/bioinformatics/btac115
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- Article
Single-cell RNA sequencing data analysis based on non-uniform ε−neighborhood network.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2459, doi. 10.1093/bioinformatics/btac114
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- Article
HFBSurv: hierarchical multimodal fusion with factorized bilinear models for cancer survival prediction.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2587, doi. 10.1093/bioinformatics/btac113
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Advanced graph and sequence neural networks for molecular property prediction and drug discovery.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2579, doi. 10.1093/bioinformatics/btac112
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- Article
scanMiR: a biochemically based toolkit for versatile and efficient microRNA target prediction.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2466, doi. 10.1093/bioinformatics/btac110
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- Article
YeastMate: neural network-assisted segmentation of mating and budding events in Saccharomyces cerevisiae.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2667, doi. 10.1093/bioinformatics/btac107
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