Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 5
Results: 48
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1403, doi. 10.1093/bioinformatics/btab839
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- Article
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1261, doi. 10.1093/bioinformatics/btab849
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- Article
Virtifier: a deep learning-based identifier for viral sequences from metagenomes.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1216, doi. 10.1093/bioinformatics/btab845
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RNAglib: a python package for RNA 2.5 D graphs.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1458, doi. 10.1093/bioinformatics/btab844
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- Article
EcoPLOT: dynamic analysis of biogeochemical data.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1480, doi. 10.1093/bioinformatics/btab842
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On the relation between input and output distributions of scRNA-seq experiments.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1336, doi. 10.1093/bioinformatics/btab841
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InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1443, doi. 10.1093/bioinformatics/btab846
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- Article
Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1470, doi. 10.1093/bioinformatics/btab838
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PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1447, doi. 10.1093/bioinformatics/btab837
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convolutional neural network for segmentation of yeast cells without manual training annotations.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1427, doi. 10.1093/bioinformatics/btab835
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- Article
CellMeSH: probabilistic cell-type identification using indexed literature.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1393, doi. 10.1093/bioinformatics/btab834
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- Article
Structural feature-driven pattern analysis for multitarget modulator landscapes.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1385, doi. 10.1093/bioinformatics/btab832
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- Article
pystablemotifs: Python library for attractor identification and control in Boolean networks.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1465, doi. 10.1093/bioinformatics/btab825
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- Article
scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1328, doi. 10.1093/bioinformatics/btab831
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- Article
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1312, doi. 10.1093/bioinformatics/btab829
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- Article
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1467, doi. 10.1093/bioinformatics/btab828
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- Article
No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of study.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1198, doi. 10.1093/bioinformatics/btab827
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- Article
network-based drug repurposing method via non-negative matrix factorization.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1369, doi. 10.1093/bioinformatics/btab826
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- Article
Unsupervised construction of computational graphs for gene expression data with explicit structural inductive biases.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1320, doi. 10.1093/bioinformatics/btab830
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- Article
SCRIP: an accurate simulator for single-cell RNA sequencing data.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1304, doi. 10.1093/bioinformatics/btab824
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- Article
3MCor: an integrative web server for metabolome–microbiome-metadata correlation analysis.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1378, doi. 10.1093/bioinformatics/btab818
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- Article
Automated classification of cytogenetic abnormalities in hematolymphoid neoplasms.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1420, doi. 10.1093/bioinformatics/btab822
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Back translation for molecule generation.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1244, doi. 10.1093/bioinformatics/btab817
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springD2A: capturing uncertainty in disease–drug association prediction with model integration.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1353, doi. 10.1093/bioinformatics/btab820
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TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1463, doi. 10.1093/bioinformatics/btab819
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- Article
miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1191, doi. 10.1093/bioinformatics/btab823
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Predicting the multi-label protein subcellular localization through multi-information fusion and MLSI dimensionality reduction based on MLFE classifier.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1223, doi. 10.1093/bioinformatics/btab811
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- Article
HDMC: a novel deep learning-based framework for removing batch effects in single-cell RNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1295, doi. 10.1093/bioinformatics/btab821
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Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1183, doi. 10.1093/bioinformatics/btab815
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RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1450, doi. 10.1093/bioinformatics/btab814
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RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1452, doi. 10.1093/bioinformatics/btab813
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- Article
Detecting spatially co-expressed gene clusters with functional coherence by graph-regularized convolutional neural network.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1344, doi. 10.1093/bioinformatics/btab812
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HolistIC: leveraging Hi–C and whole genome shotgun sequencing for double minute chromosome discovery.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1208, doi. 10.1093/bioinformatics/btab816
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- Article
DeepIDP-2L: protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1252, doi. 10.1093/bioinformatics/btab810
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- Article
ProteoDisco: a flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1437, doi. 10.1093/bioinformatics/btab809
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- Article
DeepCEL0 for 2D single-molecule localization in fluorescence microscopy.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1411, doi. 10.1093/bioinformatics/btab808
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- Article
Isoform-level quantification for single-cell RNA sequencing.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1287, doi. 10.1093/bioinformatics/btab807
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Make Interactive Complex Heatmaps in R.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1460, doi. 10.1093/bioinformatics/btab806
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- Article
trfermikit: a tool to discover VNTR-associated deletions.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1231, doi. 10.1093/bioinformatics/btab805
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- Article
CellVGAE: an unsupervised scRNA-seq analysis workflow with graph attention networks.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1277, doi. 10.1093/bioinformatics/btab804
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- Article
SCANCell reveals diverse inter-cluster interaction patterns in systemic lupus erythematosus across the disease spectrum.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1361, doi. 10.1093/bioinformatics/btab713
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- Article
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2–human mimicry and interactions.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1455, doi. 10.1093/bioinformatics/btab799
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- Article
spiralize: an R package for visualizing data on spirals.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1434, doi. 10.1093/bioinformatics/btab778
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- Article
DeepKG: an end-to-end deep learning-based workflow for biomedical knowledge graph extraction, optimization and applications.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1477, doi. 10.1093/bioinformatics/btab767
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- Article
PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1440, doi. 10.1093/bioinformatics/btab756
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DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1235, doi. 10.1093/bioinformatics/btab745
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SBGNview: towards data analysis, integration and visualization on all pathways.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1473, doi. 10.1093/bioinformatics/btab793
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RoDiCE: robust differential protein co-expression analysis for cancer complexome.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1269, doi. 10.1093/bioinformatics/btab612
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