Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 24

Results: 26

Neuron tracing from light microscopy images: automation, deep learning and bench testing.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5329, doi. 10.1093/bioinformatics/btac712

By:

Liu, Yufeng;
Wang, Gaoyu;
Ascoli, Giorgio A;
Zhou, Jiangning;
Liu, Lijuan

Publication type:

Article

Integrating transformer and imbalanced multi-label learning to identify antimicrobial peptides and their functional activities.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5368, doi. 10.1093/bioinformatics/btac711

By:

Pang, Yuxuan;
Yao, Lantian;
Xu, Jingyi;
Wang, Zhuo;
Lee, Tzong-Yi

Publication type:

Article

EvAM-Tools: tools for evolutionary accumulation and cancer progression models.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5457, doi. 10.1093/bioinformatics/btac710

By:

Diaz-Uriarte, Ramon;
Herrera-Nieto, Pablo

Publication type:

Article

ConsensuSV—from the whole-genome sequencing data to the complete variant list.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5440, doi. 10.1093/bioinformatics/btac709

By:

Chiliński, Mateusz;
Plewczynski, Dariusz

Publication type:

Article

HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5360, doi. 10.1093/bioinformatics/btac708

By:

Cai, Dehan;
Shang, Jiayu;
Sun, Yanni

Publication type:

Article

Identifying the critical state of complex biological systems by the directed-network rank score method.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5398, doi. 10.1093/bioinformatics/btac707

By:

Zhong, Jiayuan;
Han, Chongyin;
Wang, Yangkai;
Chen, Pei;
Liu, Rui

Publication type:

Article

ADViSELipidomics: a workflow for analyzing lipidomics data.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5460, doi. 10.1093/bioinformatics/btac706

By:

Prete, Eugenio Del;
Campos, Ana Margarida;
Rocca, Fabio Della;
Gallo, Carmela;
Fontana, Angelo;
Nuzzo, Genoveffa;
Angelini, Claudia

Publication type:

Article

3DPolyS-LE: an accessible simulation framework to model the interplay between chromatin and loop extrusion.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5454, doi. 10.1093/bioinformatics/btac705

By:

Gitchev, Todor;
Zala, Gabriel;
Meister, Peter;
Jost, Daniel

Publication type:

Article

GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5413, doi. 10.1093/bioinformatics/btac704

By:

Groth, Theodore;
Diehl, Alexander D;
Gunawan, Rudiyanto;
Neelamegham, Sriram

Publication type:

Article

EcoTransLearn: an R-package to easily use transfer learning for ecological studies—a plankton case study.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5469, doi. 10.1093/bioinformatics/btac703

By:

Wacquet, Guillaume;
Lefebvre, Alain

Publication type:

Article

HAT: haplotype assembly tool using short and error-prone long reads.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5352, doi. 10.1093/bioinformatics/btac702

By:

Zade, Ramin Shirali Hossein;
Urhan, Aysun;
Souza, Alvaro Assis de;
Singh, Akash;
Abeel, Thomas

Publication type:

Article

AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5452, doi. 10.1093/bioinformatics/btac701

By:

Feidakis, Christos P;
Krivak, Radoslav;
Hoksza, David;
Novotny, Marian

Publication type:

Article

Convex hull as diagnostic tool in single-molecule localization microscopy.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5421, doi. 10.1093/bioinformatics/btac700

By:

Ebert, Vincent;
Eiring, Patrick;
Helmerich, Dominic A;
Seifert, Rick;
Sauer, Markus;
Doose, Sören

Publication type:

Article

DeepPerVar: a multi-modal deep learning framework for functional interpretation of genetic variants in personal genome.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5340, doi. 10.1093/bioinformatics/btac696

By:

Wang, Ye;
Chen, Li

Publication type:

Article

LCD-Composer webserver: high-specificity identification and functional analysis of low-complexity domains in proteins.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5446, doi. 10.1093/bioinformatics/btac699

By:

Cascarina, Sean M;
Ross, Eric D

Publication type:

Article

OmicsEV: a tool for comprehensive quality evaluation of omics data tables.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5463, doi. 10.1093/bioinformatics/btac698

By:

Wen, Bo;
Jaehnig, Eric J;
Zhang, Bing

Publication type:

Article

CRISPRon/off: CRISPR/Cas9 on- and off-target gRNA design.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5437, doi. 10.1093/bioinformatics/btac697

By:

Anthon, Christian;
Corsi, Giulia Ilaria;
Gorodkin, Jan

Publication type:

Article

MAGScoT: a fast, lightweight and accurate bin-refinement tool.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5430, doi. 10.1093/bioinformatics/btac694

By:

Rühlemann, Malte Christoph;
Wacker, Eike Matthias;
Ellinghaus, David;
Franke, Andre

Publication type:

Article

SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5434, doi. 10.1093/bioinformatics/btac695

By:

Robert, Nicolas Serge Matthieu;
Sarigol, Fatih;
Zieger, Elisabeth;
Simakov, Oleg

Publication type:

Article

Defining the extent of gene function using ROC curvature.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5390, doi. 10.1093/bioinformatics/btac692

By:

Fischer, Stephan;
Gillis, Jesse

Publication type:

Article

BraneMF: integration of biological networks for functional analysis of proteins.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5383, doi. 10.1093/bioinformatics/btac691

By:

Jagtap, Surabhi;
Çelikkanat, Abdulkadir;
Pirayre, Aurélie;
Bidard, Frédérique;
Duval, Laurent;
Malliaros, Fragkiskos D

Publication type:

Article

kmdiff, large-scale and user-friendly differential k-mer analyses.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5443, doi. 10.1093/bioinformatics/btac689

By:

Lemane, Téo;
Chikhi, Rayan;
Peterlongo, Pierre

Publication type:

Article

in silico genome-wide screen for circadian clock strength in human samples.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5375, doi. 10.1093/bioinformatics/btac686

By:

Wu, Gang;
Ruben, Marc D;
Francey, Lauren J;
Lee, Yin Yeng;
Anafi, Ron C;
Hogenesch, John B

Publication type:

Article

LaGAT: link-aware graph attention network for drug–drug interaction prediction.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5406, doi. 10.1093/bioinformatics/btac682

By:

Hong, Yue;
Luo, Pengyu;
Jin, Shuting;
Liu, Xiangrong

Publication type:

Article

DREAMM: a web-based server for drugging protein-membrane interfaces as a novel workflow for targeted drug design.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5449, doi. 10.1093/bioinformatics/btac680

By:

Chatzigoulas, Alexios;
Cournia, Zoe

Publication type:

Article

Common data model for COVID-19 datasets.

Published in:

Bioinformatics, 2022, v. 38, n. 24, p. 5466, doi. 10.1093/bioinformatics/btac651

By:

Wegner, Philipp;
Jose, Geena Mariya;
Lage-Rupprecht, Vanessa;
Khatami, Sepehr Golriz;
Zhang, Bide;
Springstubbe, Stephan;
Jacobs, Marc;
Linden, Thomas;
Ku, Cindy;
Schultz, Bruce;
Hofmann-Apitius, Martin;
Kodamullil, Alpha Tom;
Consortium, for the COPERIMOplus

Publication type:

Article