Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 23

Results: 25

Biomedical evidence engineering for data-driven discovery.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5270, doi. 10.1093/bioinformatics/btac675

By:

Zhao, Sendong;
Wang, Aobo;
Qin, Bing;
Wang, Fei

Publication type:

Article

CAMML with the Integration of Marker Proteins (ChIMP).

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5206, doi. 10.1093/bioinformatics/btac674

By:

Schiebout, Courtney;
Frost, H Robert

Publication type:

Article

SATINN: an automated neural network-based classification of testicular sections allows for high-throughput histopathology of mouse mutants.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5288, doi. 10.1093/bioinformatics/btac673

By:

Yang, Ran;
Stendahl, Alexandra M;
Vigh-Conrad, Katinka A;
Held, Madison;
Lima, Ana C;
Conrad, Donald F

Publication type:

Article

GTDB-Tk v2: memory friendly classification with the genome taxonomy database.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5315, doi. 10.1093/bioinformatics/btac672

By:

Chaumeil, Pierre-Alain;
Mussig, Aaron J;
Hugenholtz, Philip;
Parks, Donovan H

Publication type:

Article

Powerful and interpretable control of false discoveries in two-group differential expression studies.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5214, doi. 10.1093/bioinformatics/btac693

By:

Enjalbert-Courrech, Nicolas;
Neuvial, Pierre

Publication type:

Article

Improving and evaluating deep learning models of cellular organization.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5299, doi. 10.1093/bioinformatics/btac688

By:

Sun, Huangqingbo;
Fu, Xuecong;
Abraham, Serena;
Jin, Shen;
Murphy, Robert F

Publication type:

Article

CoxMKF: a knockoff filter for high-dimensional mediation analysis with a survival outcome in epigenetic studies.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5229, doi. 10.1093/bioinformatics/btac687

By:

Tian, Peixin;
Yao, Minhao;
Huang, Tao;
Liu, Zhonghua

Publication type:

Article

ATLIGATOR: editing protein interactions with an atlas-based approach.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5199, doi. 10.1093/bioinformatics/btac685

By:

Kynast, Josef Paul;
Schwägerl, Felix;
Höcker, Birte

Publication type:

Article

scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5322, doi. 10.1093/bioinformatics/btac684

By:

Gu, Haocheng;
Cheng, Hao;
Ma, Anjun;
Li, Yang;
Wang, Juexin;
Xu, Dong;
Ma, Qin

Publication type:

Article

AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5236, doi. 10.1093/bioinformatics/btac683

By:

Jafari, Elham;
Johnson, Travis;
Wang, Yue;
Liu, Yunlong;
Huang, Kun;
Wang, Yijie

Publication type:

Article

Evaluation of efficiency prediction algorithms and development of ensemble model for CRISPR/Cas9 gRNA selection.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5175, doi. 10.1093/bioinformatics/btac681

By:

Chen, Yuhao;
Wang, Xiaowei

Publication type:

Article

Estimation of speciation times under the multispecies coalescent.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5182, doi. 10.1093/bioinformatics/btac679

By:

Peng, Jing;
Swofford, David L;
Kubatko, Laura

Publication type:

Article

E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5168, doi. 10.1093/bioinformatics/btac678

By:

Manfredi, Matteo;
Savojardo, Castrense;
Martelli, Pier Luigi;
Casadio, Rita

Publication type:

Article

novel pipeline for computerized mouse spermatogenesis staging.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5307, doi. 10.1093/bioinformatics/btac677

By:

Lu, Haoda;
Zang, Min;
Marini, Gabriel Pik Liang;
Wang, Xiangxue;
Jiao, Yiping;
Ao, Nianfei;
Ong, Kokhaur;
Huo, Xinmi;
Li, Longjie;
Xu, Eugene Yujun;
Goh, Wilson Wen Bin;
Yu, Weimiao;
Xu, Jun

Publication type:

Article

Prediction of drug-likeness using graph convolutional attention network.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5262, doi. 10.1093/bioinformatics/btac676

By:

Sun, Jinyu;
Wen, Ming;
Wang, Huabei;
Ruan, Yuezhe;
Yang, Qiong;
Kang, Xiao;
Zhang, Hailiang;
Zhang, Zhimin;
Lu, Hongmei

Publication type:

Article

MSNet-4mC: learning effective multi-scale representations for identifying DNA N4-methylcytosine sites.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5160, doi. 10.1093/bioinformatics/btac671

By:

Liu, Chunting;
Song, Jiangning;
Ogata, Hiroyuki;
Akutsu, Tatsuya

Publication type:

Article

scHiCPTR: unsupervised pseudotime inference through dual graph refinement for single-cell Hi-C data.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5151, doi. 10.1093/bioinformatics/btac670

By:

Lyu, Hongqiang;
Liu, Erhu;
Wu, Zhifang;
Li, Yao;
Liu, Yuan;
Yin, Xiaoran

Publication type:

Article

Tree2GD: a phylogenomic method to detect large-scale gene duplication events.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5317, doi. 10.1093/bioinformatics/btac669

By:

Chen, Duoyuan;
Zhang, Taikui;
Chen, Yamao;
Ma, Hong;
Qi, Ji

Publication type:

Article

MDSCAN: RMSD-based HDBSCAN clustering of long molecular dynamics.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5191, doi. 10.1093/bioinformatics/btac666

By:

González-Alemán, Roy;
Platero-Rochart, Daniel;
Rodríguez-Serradet, Alejandro;
Hernández-Rodríguez, Erix W;
Caballero, Julio;
Leclerc, Fabrice;
Montero-Cabrera, Luis

Publication type:

Article

CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5245, doi. 10.1093/bioinformatics/btac668

By:

Zhao, Yue;
Yu, Lianbo;
Wu, Xue;
Li, Haoran;
Coombes, Kevin R;
Au, Kin Fai;
Cheng, Lijun;
Li, Lang

Publication type:

Article

Correction to: plotsr: visualizing structural similarities and rearrangements between multiple genomes.

Published in:: 2022
Publication type:: Correction Notice

Learning temporal difference embeddings for biomedical hypothesis generation.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5253, doi. 10.1093/bioinformatics/btac660

By:

Zhou, Huiwei;
Jiang, Haibin;
Yao, Weihong;
Du, Xun

Publication type:

Article

penalized linear mixed model with generalized method of moments estimators for complex phenotype prediction.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5222, doi. 10.1093/bioinformatics/btac659

By:

Wang, Xiaqiong;
Wen, Yalu

Publication type:

Article

METAbolomics data Balancing with Over-sampling Algorithms (META-BOA): an online resource for addressing class imbalance.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5326, doi. 10.1093/bioinformatics/btac649

By:

Hashimoto-Roth, Emily;
Surendra, Anuradha;
Lavallée-Adam, Mathieu;
Bennett, Steffany A L;
Čuperlović-Culf, Miroslava

Publication type:

Article

Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine.

Published in:

Bioinformatics, 2022, v. 38, n. 23, p. 5279, doi. 10.1093/bioinformatics/btac646

By:

Zhao, Yiqing;
Brush, Matthew;
Wang, Chen;
Wagner, Alex H;
Liu, Hongfang;
Freimuth, Robert R

Publication type:

Article