Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 18

Results: 37

DiNAMIC.Duo: detecting somatic DNA copy number differences without a normal reference.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4415, doi. 10.1093/bioinformatics/btac542

By:

Walter, Vonn;
Choi, Hyo Young;
Zhao, Xiaobei;
Gao, Yan;
Holt, Jeremiah;
Hayes, D Neil

Publication type:

Article

ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4330, doi. 10.1093/bioinformatics/btac541

By:

Iida, Keita;
Kondo, Jumpei;
Wibisana, Johannes Nicolaus;
Inoue, Masahiro;
Okada, Mariko

Publication type:

Article

CPRiL: compound–protein relationships in literature.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4452, doi. 10.1093/bioinformatics/btac539

By:

Qaseem, Ammar;
Günther, Stefan

Publication type:

Article

Multidrug representation learning based on pretraining model and molecular graph for drug interaction and combination prediction.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4387, doi. 10.1093/bioinformatics/btac538

By:

Ren, Shujie;
Yu, Liang;
Gao, Lin

Publication type:

Article

tmVar 3.0: an improved variant concept recognition and normalization tool.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4449, doi. 10.1093/bioinformatics/btac537

By:

Wei, Chih-Hsuan;
Allot, Alexis;
Riehle, Kevin;
Milosavljevic, Aleksandar;
Lu, Zhiyong

Publication type:

Article

MIB2: metal ion-binding site prediction and modeling server.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4428, doi. 10.1093/bioinformatics/btac534

By:

Lu, Chih-Hao;
Chen, Chih-Chieh;
Yu, Chin-Sheng;
Liu, Yen-Yi;
Liu, Jia-Jun;
Wei, Sung-Tai;
Lin, Yu-Feng

Publication type:

Article

Automatic DNA replication tract measurement to assess replication and repair dynamics at the single-molecule level.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4395, doi. 10.1093/bioinformatics/btac533

By:

Li, Longjie;
Kolinjivadi, Arun Mouli;
Ong, Kok Haur;
Young, David M;
Marini, Gabriel Pik Liang;
Chan, Sock Hoai;
Chong, Siao Ting;
Chew, Ee Ling;
Lu, Haoda;
Gole, Laurent;
Yu, Weimiao;
Ngeow, Joanne

Publication type:

Article

improved residual network using deep fusion for identifying RNA 5-methylcytosine sites.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4271, doi. 10.1093/bioinformatics/btac532

By:

Li, Xinjie;
Zhang, Shengli;
Shi, Hongyan

Publication type:

Article

PLCOjs, a FAIR GWAS web SDK for the NCI Prostate, Lung, Colorectal and Ovarian Cancer Genetic Atlas project.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4434, doi. 10.1093/bioinformatics/btac531

By:

Ruan, Eric;
Nemeth, Erika;
Moffitt, Richard;
Sandoval, Lorena;
Machiela, Mitchell J;
Freedman, Neal D;
Huang, Wen-Yi;
Wong, Wendy;
Chen, Kai-Ling;
Park, Brian;
Jiang, Kevin;
Hicks, Belynda;
Liu, Jia;
Russ, Daniel;
Minasian, Lori;
Pinsky, Paul;
Chanock, Stephen J;
Garcia-Closas, Montserrat;
Almeida, Jonas S

Publication type:

Article

Overcoming selection bias in synthetic lethality prediction.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4360, doi. 10.1093/bioinformatics/btac523

By:

Seale, Colm;
Tepeli, Yasin;
Gonçalves, Joana P

Publication type:

Article

Prediction of HIV sensitivity to monoclonal antibodies using aminoacid sequences and deep learning.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4278, doi. 10.1093/bioinformatics/btac530

By:

Dănăilă, Vlad-Rareş;
Buiu, Cătălin

Publication type:

Article

Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4301, doi. 10.1093/bioinformatics/btac527

By:

Pei, Jimin;
Zhang, Jing;
Cong, Qian

Publication type:

Article

TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4430, doi. 10.1093/bioinformatics/btac526

By:

Ansaloni, Federico;
Gualandi, Nicolò;
Esposito, Mauro;
Gustincich, Stefano;
Sanges, Remo

Publication type:

Article

LanceOtron: a deep learning peak caller for genome sequencing experiments.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4255, doi. 10.1093/bioinformatics/btac525

By:

Hentges, Lance D;
Sergeant, Martin J;
Cole, Christopher B;
Downes, Damien J;
Hughes, Jim R;
Taylor, Stephen

Publication type:

Article

REALGAR: a web app of integrated respiratory omics data.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4442, doi. 10.1093/bioinformatics/btac524

By:

Kan, Mengyuan;
Diwadkar, Avantika R;
Saxena, Supriya;
Shuai, Haoyue;
Joo, Jaehyun;
Himes, Blanca E

Publication type:

Article

K-mer File Format: a standardized and compact disk representation of sets of k-mers.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4423, doi. 10.1093/bioinformatics/btac528

By:

Dufresne, Yoann;
Lemane, Teo;
Marijon, Pierre;
Peterlongo, Pierre;
Rahman, Amatur;
Kokot, Marek;
Medvedev, Paul;
Deorowicz, Sebastian;
Chikhi, Rayan

Publication type:

Article

ViReMaShiny: an interactive application for analysis of viral recombination data.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4420, doi. 10.1093/bioinformatics/btac522

By:

Yeung, Jason;
Routh, Andrew L

Publication type:

Article

Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4440, doi. 10.1093/bioinformatics/btac521

By:

Pradelli, Franco;
Minervini, Giovanni;
Tosatto, Silvio C E

Publication type:

Article

CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4380, doi. 10.1093/bioinformatics/btac520

By:

Chen, Yuhao;
Hu, Yanshi;
Hu, Xiaotian;
Feng, Cong;
Chen, Ming

Publication type:

Article

SpikePro: a webserver to predict the fitness of SARS-CoV-2 variants.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4418, doi. 10.1093/bioinformatics/btac517

By:

Cia, Gabriel;
Kwasigroch, Jean Marc;
Rooman, Marianne;
Pucci, Fabrizio

Publication type:

Article

Best templates outperform homology models in predicting the impact of mutations on protein stability.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4312, doi. 10.1093/bioinformatics/btac515

By:

Pak, Marina A;
Ivankov, Dmitry N

Publication type:

Article

Detecting retinal neural and stromal cell classes and ganglion cell subtypes based on transcriptome data with deep transfer learning.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4321, doi. 10.1093/bioinformatics/btac514

By:

Madadi, Yeganeh;
Sun, Jian;
Chen, Hao;
Williams, Robert;
Yousefi, Siamak

Publication type:

Article

ColocQuiaL: a QTL-GWAS colocalization pipeline.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4409, doi. 10.1093/bioinformatics/btac512

By:

Chen, Brian Y;
Bone, William P;
Lorenz, Kim;
Levin, Michael;
Ritchie, Marylyn D;
Voight, Benjamin F

Publication type:

Article

SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4293, doi. 10.1093/bioinformatics/btac510

By:

Rozhoňová, Hana;
Danciu, Daniel;
Stark, Stefan;
Rätsch, Gunnar;
Kahles, André;
Lehmann, Kjong-Van

Publication type:

Article

Identification of bacteriophage genome sequences with representation learning.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4264, doi. 10.1093/bioinformatics/btac509

By:

Bai, Zeheng;
Zhang, Yao-zhong;
Miyano, Satoru;
Yamaguchi, Rui;
Fujimoto, Kosuke;
Uematsu, Satoshi;
Imoto, Seiya

Publication type:

Article

BioADAPT-MRC: adversarial learning-based domain adaptation improves biomedical machine reading comprehension task.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4369, doi. 10.1093/bioinformatics/btac508

By:

Mahbub, Maria;
Srinivasan, Sudarshan;
Begoli, Edmon;
Peterson, Gregory D

Publication type:

Article

TargetMine 2022: a new vision into drug target analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4454, doi. 10.1093/bioinformatics/btac507

By:

Chen, Yi-An;
Osorio, Rodolfo S Allendes;
Mizuguchi, Kenji

Publication type:

Article

PanTools v3: functional annotation, classification and phylogenomics.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4403, doi. 10.1093/bioinformatics/btac506

By:

Jonkheer, Eef M;
Workum, Dirk-Jan M van;
Anari, Siavash Sheikhizadeh;
Brankovics, Balázs;
Haan, Jorn R de;
Berke, Lidija;
Lee, Theo A J van der;
Ridder, Dick de;
Smit, Sandra

Publication type:

Article

PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4412, doi. 10.1093/bioinformatics/btac504

By:

Dereeper, Alexis;
Summo, Marilyne;
Meyer, Damien F

Publication type:

Article

ShinySyn: a Shiny/R application for the interactive visualization and integration of macro- and micro-synteny data.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4406, doi. 10.1093/bioinformatics/btac503

By:

Xiao, Zhixia;
Lam, Hon-Ming

Publication type:

Article

NMRpQuant: an automated software for large scale urinary total protein quantification by one-dimensional 1H NMR profiles.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4437, doi. 10.1093/bioinformatics/btac502

By:

Takis, Panteleimon G;
Vuckovic, Ivan;
Tan, Tricia;
Denic, Aleksandar;
Lieske, John C;
Lewis, Matthew R;
Macura, Slobodan

Publication type:

Article

Quasi-Entropy Closure: a fast and reliable approach to close the moment equations of the Chemical Master Equation.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4352, doi. 10.1093/bioinformatics/btac501

By:

Wagner, Vincent;
Castellaz, Benjamin;
Oesting, Marco;
Radde, Nicole

Publication type:

Article

BioCaster in 2021: automatic disease outbreaks detection from global news media.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4446, doi. 10.1093/bioinformatics/btac497

By:

Meng, Zaiqiao;
Okhmatovskaia, Anya;
Polleri, Maxime;
Shen, Yannan;
Powell, Guido;
Fu, Zihao;
Ganser, Iris;
Zhang, Meiru;
King, Nicholas B;
Buckeridge, David;
Collier, Nigel

Publication type:

Article

MOCHI: a comprehensive cross-platform tool for amplicon-based microbiota analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4286, doi. 10.1093/bioinformatics/btac494

By:

Zheng, Jun-Jie;
Wang, Po-Wen;
Huang, Tzu-Wen;
Yang, Yao-Jong;
Chiu, Hua-Sheng;
Sumazin, Pavel;
Chen, Ting-Wen

Publication type:

Article

Identifying cellular cancer mechanisms through pathway-driven data integration.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4344, doi. 10.1093/bioinformatics/btac493

By:

Windels, Sam F L;
Malod-Dognin, Noël;
Pržulj, Nataša

Publication type:

Article

Incorporating family disease history and controlling case–control imbalance for population-based genetic association studies.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4337, doi. 10.1093/bioinformatics/btac459

By:

Zhuang, Yongwen;
Wolford, Brooke N;
Nam, Kisung;
Bi, Wenjian;
Zhou, Wei;
Willer, Cristen J;
Mukherjee, Bhramar;
Lee, Seunggeun

Publication type:

Article

ToxSTAR: drug-induced liver injury prediction tool for the web environment.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4426, doi. 10.1093/bioinformatics/btac490

By:

Shin, Hyun Kil;
Chun, Hang-Suk;
Lee, Sangwoo;
Park, Se-Myo;
Park, Daeui;
Kang, Myung-Gyun;
Hwang, Sungbo;
Oh, Jung-Hwa;
Han, Hyoung-Yun;
Kim, Woo-Keun;
Yoon, Seokjoo

Publication type:

Article