Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 17

Results: 32

Predicting and explaining the impact of genetic disruptions and interactions on organismal viability.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4088, doi. 10.1093/bioinformatics/btac519

By:

Al-Anzi, Bader F;
Khajah, Mohammad;
Fakhraldeen, Saja A

Publication type:

Article

High-dimension to high-dimension screening for detecting genome-wide epigenetic and noncoding RNA regulators of gene expression.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4078, doi. 10.1093/bioinformatics/btac518

By:

Ke, Hongjie;
Ren, Zhao;
Qi, Jianfei;
Chen, Shuo;
Tseng, George C;
Ye, Zhenyao;
Ma, Tianzhou

Publication type:

Article

ANISE: an application to design mechanobiology simulations of planar epithelia.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4246, doi. 10.1093/bioinformatics/btac511

By:

Cerro, Ángel Rodríguez;
Sancho, Sergio;
Rodríguez, Míriam;
Gamón, Miguel A;
Guitou, Léna;
Martínez, Rafael J;
Buceta, Javier

Publication type:

Article

CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4230, doi. 10.1093/bioinformatics/btac505

By:

Rognes, Torbjørn;
Scheffer, Lonneke;
Greiff, Victor;
Sandve, Geir Kjetil

Publication type:

Article

DiffChIPL: a differential peak analysis method for high-throughput sequencing data with biological replicates based on limma.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4062, doi. 10.1093/bioinformatics/btac498

By:

Chen, Yang;
Chen, Shue;
Lei, Elissa P

Publication type:

Article

Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4100, doi. 10.1093/bioinformatics/btac492

By:

Darvish, Mitra;
Seiler, Enrico;
Mehringer, Svenja;
Rahn, René;
Reinert, Knut

Publication type:

Article

TogoID: an exploratory ID converter to bridge biological datasets.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4194, doi. 10.1093/bioinformatics/btac491

By:

Ikeda, Shuya;
Ono, Hiromasa;
Ohta, Tazro;
Chiba, Hirokazu;
Naito, Yuki;
Moriya, Yuki;
Kawashima, Shuichi;
Yamamoto, Yasunori;
Okamoto, Shinobu;
Goto, Susumu;
Katayama, Toshiaki

Publication type:

Article

HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4185, doi. 10.1093/bioinformatics/btac483

By:

Panei, F P;
Torchet, R;
Ménager, H;
Gkeka, P;
Bonomi, M

Publication type:

Article

Identifying modifications on DNA-bound histones with joint deep learning of multiple binding sites in DNA sequence.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4070, doi. 10.1093/bioinformatics/btac489

By:

Li, Yan;
Quan, Lijun;
Zhou, Yiting;
Jiang, Yelu;
Li, Kailong;
Wu, Tingfang;
Lyu, Qiang

Publication type:

Article

GenBank as a source to monitor and analyze Host-Microbiome data.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4172, doi. 10.1093/bioinformatics/btac487

By:

Ramanan, Vivek;
Mechery, Shanti;
Sarkar, Indra Neil

Publication type:

Article

Docking cyclic peptides formed by a disulfide bond through a hierarchical strategy.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4109, doi. 10.1093/bioinformatics/btac486

By:

Tao, Huanyu;
Zhao, Xuejun;
Zhang, Keqiong;
Lin, Peicong;
Huang, Sheng-You

Publication type:

Article

IIFDTI: predicting drug–target interactions through interactive and independent features based on attention mechanism.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4153, doi. 10.1093/bioinformatics/btac485

By:

Cheng, Zhongjian;
Zhao, Qichang;
Li, Yaohang;
Wang, Jianxin

Publication type:

Article

RNAloops: a database of RNA multiloops.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4200, doi. 10.1093/bioinformatics/btac484

By:

Wiedemann, Jakub;
Kaczor, Jacek;
Milostan, Maciej;
Zok, Tomasz;
Blazewicz, Jacek;
Szachniuk, Marta;
Antczak, Maciej

Publication type:

Article

Optimization of synthetic molecular reporters for a mesenchymal glioblastoma transcriptional program by integer programing.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4162, doi. 10.1093/bioinformatics/btac488

By:

Breitenbach, Tim;
Schmitt, Matthias Jürgen;
Dandekar, Thomas

Publication type:

Article

DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4243, doi. 10.1093/bioinformatics/btac472

By:

Fu, Xiaoming;
Zhou, Xinyi;
Gu, Dongyang;
Cao, Zhixing;
Grima, Ramon

Publication type:

Article

StabilitySort: assessment of protein stability changes on a genome-wide scale to prioritize potentially pathogenic genetic variation.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4220, doi. 10.1093/bioinformatics/btac465

By:

Chuah, Aaron;
Li, Sean;
Do, Andrea;
Field, Matt;
Andrews, Dan

Publication type:

Article

CondiS web app: imputation of censored lifetimes for machine learning-based survival analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4252, doi. 10.1093/bioinformatics/btac461

By:

Wang, Yizhuo;
Flowers, Christopher R;
Li, Ziyi;
Huang, Xuelin

Publication type:

Article

Flashfm-ivis: interactive visualization for fine-mapping of multiple quantitative traits.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4238, doi. 10.1093/bioinformatics/btac453

By:

Zhou, Feng;
Butterworth, Adam S;
Asimit, Jennifer L

Publication type:

Article

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4214, doi. 10.1093/bioinformatics/btac460

By:

Formenti, Giulio;
Abueg, Linelle;
Brajuka, Angelo;
Brajuka, Nadolina;
Gallardo-Alba, Cristóbal;
Giani, Alice;
Fedrigo, Olivier;
Jarvis, Erich D

Publication type:

Article

Identification of cell-type-specific spatially variable genes accounting for excess zeros.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4135, doi. 10.1093/bioinformatics/btac457

By:

Yu, Jinge;
Luo, Xiangyu

Publication type:

Article

DEMoS: a deep learning-based ensemble approach for predicting the molecular subtypes of gastric adenocarcinomas from histopathological images.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4206, doi. 10.1093/bioinformatics/btac456

By:

Wang, Yanan;
Hu, Changyuan;
Kwok, Terry;
Bain, Christopher A;
Xue, Xiangyang;
Gasser, Robin B;
Webb, Geoffrey I;
Boussioutas, Alex;
Shen, Xian;
Daly, Roger J;
Song, Jiangning

Publication type:

Article

DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4053, doi. 10.1093/bioinformatics/btac454

By:

Liu, Quanzhong;
Fang, Honglin;
Wang, Xiao;
Wang, Miao;
Li, Shuqin;
Coin, Lachlan J M;
Li, Fuyi;
Song, Jiangning

Publication type:

Article

SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4226, doi. 10.1093/bioinformatics/btac458

By:

Özsarı, Gökhan;
Rifaioglu, Ahmet Sureyya;
Atakan, Ahmet;
Doğan, Tunca;
Martin, Maria Jesus;
Atalay, Rengül Çetin;
Atalay, Volkan

Publication type:

Article

DockingPie: a consensus docking plugin for PyMOL.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4233, doi. 10.1093/bioinformatics/btac452

By:

Rosignoli, Serena;
Paiardini, Alessandro

Publication type:

Article

Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4178, doi. 10.1093/bioinformatics/btac451

By:

Sonabend, Raphael;
Bender, Andreas;
Vollmer, Sebastian

Publication type:

Article

PCN-Miner: an open-source extensible tool for the analysis of Protein Contact Networks.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4235, doi. 10.1093/bioinformatics/btac450

By:

Guzzi, Pietro Hiram;
Paola, Luisa Di;
Giuliani, Alessandro;
Veltri, Pierangelo

Publication type:

Article

Pkgndep: a tool for analyzing dependency heaviness of R packages.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4248, doi. 10.1093/bioinformatics/btac449

By:

Gu, Zuguang;
Hübschmann, Daniel

Publication type:

Article

BubbleGun: enumerating bubbles and superbubbles in genome graphs.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4217, doi. 10.1093/bioinformatics/btac448

By:

Dabbaghie, Fawaz;
Ebler, Jana;
Marschall, Tobias

Publication type:

Article

LRLoop: a method to predict feedback loops in cell–cell communication.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4117, doi. 10.1093/bioinformatics/btac447

By:

Xin, Ying;
Lyu, Pin;
Jiang, Junyao;
Zhou, Fengquan;
Wang, Jie;
Blackshaw, Seth;
Qian, Jiang

Publication type:

Article

Biological Random Walks: multi-omics integration for disease gene prioritization.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4145, doi. 10.1093/bioinformatics/btac446

By:

Gentili, Michele;
Martini, Leonardo;
Sponziello, Marialuisa;
Becchetti, Luca

Publication type:

Article

Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4127, doi. 10.1093/bioinformatics/btac445

By:

Pomiès, Lise;
Brouard, Céline;
Duruflé, Harold;
Maigné, Élise;
Carré, Clément;
Gody, Louise;
Trösser, Fulya;
Katsirelos, George;
Mangin, Brigitte;
Langlade, Nicolas B;
Givry, Simon de

Publication type:

Article

CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.

Published in:

Bioinformatics, 2022, v. 38, n. 17, p. 4223, doi. 10.1093/bioinformatics/btac411

By:

Wittig, Alice;
Miranda, Fábio;
Hölzer, Martin;
Altenburg, Tom;
Bartoszewicz, Jakub M;
Beyvers, Sebastian;
Dieckmann, Marius A;
Genske, Ulrich;
Giese, Sven H;
Nowicka, Melania;
Richard, Hugues;
Schiebenhoefer, Henning;
Schmachtenberg, Anna-Juliane;
Sieben, Paul;
Tang, Ming;
Tembrockhaus, Julius;
Renard, Bernhard Y;
Fuchs, Stephan

Publication type:

Article