Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 16

Results: 32

Topological analysis as a tool for detection of abnormalities in protein–protein interaction data.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3968, doi. 10.1093/bioinformatics/btac440

By:

Nowakowska, Alicja W;
Kotulska, Malgorzata

Publication type:

Article

Ab-CoV: a curated database for binding affinity and neutralization profiles of coronavirus-related antibodies.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4051, doi. 10.1093/bioinformatics/btac439

By:

Rawat, Puneet;
Sharma, Divya;
Prabakaran, R;
Ridha, Fathima;
Mohkhedkar, Mugdha;
Janakiraman, Vani;
Gromiha, M Michael

Publication type:

Article

Random field modeling of multi-trait multi-locus association for detecting methylation quantitative trait loci.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3853, doi. 10.1093/bioinformatics/btac443

By:

Lyu, Chen;
Huang, Manyan;
Liu, Nianjun;
Chen, Zhongxue;
Lupo, Philip J;
Tycko, Benjamin;
Witte, John S;
Hobbs, Charlotte A;
Li, Ming

Publication type:

Article

HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4030, doi. 10.1093/bioinformatics/btac442

By:

Lexa, Matej;
Cechova, Monika;
Nguyen, Son Hoang;
Jedlicka, Pavel;
Tokan, Viktor;
Kubat, Zdenek;
Hobza, Roman;
Kejnovsky, Eduard

Publication type:

Article

MobilityTransformR: an R package for effective mobility transformation of CE-MS data.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4044, doi. 10.1093/bioinformatics/btac441

By:

Salzer, Liesa;
Witting, Michael;
Schmitt-Kopplin, Philippe

Publication type:

Article

ChromDMM: a Dirichlet-multinomial mixture model for clustering heterogeneous epigenetic data.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3863, doi. 10.1093/bioinformatics/btac444

By:

Osmala, Maria;
Eraslan, Gökçen;
Lähdesmäki, Harri

Publication type:

Article

microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4027, doi. 10.1093/bioinformatics/btac438

By:

Cao, Yang;
Dong, Qingyang;
Wang, Dan;
Zhang, Pengcheng;
Liu, Ying;
Niu, Chao

Publication type:

Article

HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4036, doi. 10.1093/bioinformatics/btac437

By:

Singh, Vinod Kumar;
Misra, Rohan;
Almo, Steven C;
Steidl, Ulrich G;
Bülow, Hannes E;
Zheng, Deyou

Publication type:

Article

InterpolatedXY: a two-step strategy to normalize DNA methylation microarray data avoiding sex bias.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3950, doi. 10.1093/bioinformatics/btac436

By:

Wang, Yucheng;
Gorrie-Stone, Tyler J;
Grant, Olivia A;
Andrayas, Alexandria D;
Zhai, Xiaojun;
McDonald-Maier, Klaus D;
Schalkwyk, Leonard C

Publication type:

Article

MSRCall: a multi-scale deep neural network to basecall Oxford Nanopore sequences.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3877, doi. 10.1093/bioinformatics/btac435

By:

Yeh, Yang-Ming;
Lu, Yi-Chang

Publication type:

Article

i6mA-Caps: a CapsuleNet-based framework for identifying DNA N6-methyladenine sites.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3885, doi. 10.1093/bioinformatics/btac434

By:

Rehman, Mobeen Ur;
Tayara, Hilal;
Zou, Quan;
Chong, Kil To

Publication type:

Article

Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4039, doi. 10.1093/bioinformatics/btac433

By:

Fukunaga, Tsukasa;
Iwasaki, Wataru

Publication type:

Article

PScL-DDCFPred: an ensemble deep learning-based approach for characterizing multiclass subcellular localization of human proteins from bioimage data.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4019, doi. 10.1093/bioinformatics/btac432

By:

Ullah, Matee;
Hadi, Fazal;
Song, Jiangning;
Yu, Dong-Jun

Publication type:

Article

Outlier detection for multi-network data.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4011, doi. 10.1093/bioinformatics/btac431

By:

Dey, Pritam;
Zhang, Zhengwu;
Dunson, David B

Publication type:

Article

ProtNAff: protein-bound Nucleic Acid filters and fragment libraries.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3911, doi. 10.1093/bioinformatics/btac430

By:

Moniot, Antoine;
Guermeur, Yann;
Vries, Sjoerd Jacob de;
Beauchene, Isaure Chauvot de

Publication type:

Article

RAPPPID: towards generalizable protein interaction prediction with AWD-LSTM twin networks.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3958, doi. 10.1093/bioinformatics/btac429

By:

Szymborski, Joseph;
Emad, Amin

Publication type:

Article

unifying network modeling approach for codon optimization.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3935, doi. 10.1093/bioinformatics/btac428

By:

Karaşan, Oya;
Şen, Alper;
Tiryaki, Banu;
Cicek, A Ercument

Publication type:

Article

ResPAN: a powerful batch correction model for scRNA-seq data through residual adversarial networks.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3942, doi. 10.1093/bioinformatics/btac427

By:

Wang, Yuge;
Liu, Tianyu;
Zhao, Hongyu

Publication type:

Article

Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4042, doi. 10.1093/bioinformatics/btac426

By:

Li, Jun;
Zhang, Sicheng;
Zhang, Dong;
Chen, Shi-Jie

Publication type:

Article

mapDATAge: a ShinyR package to chart ancient DNA data through space and time.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3992, doi. 10.1093/bioinformatics/btac425

By:

Liu, Xuexue;
Orlando, Ludovic

Publication type:

Article

gofasta: command-line utilities for genomic epidemiology research.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4033, doi. 10.1093/bioinformatics/btac424

By:

Jackson, Ben

Publication type:

Article

Single-cell generalized trend model (scGTM): a flexible and interpretable model of gene expression trend along cell pseudotime.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3927, doi. 10.1093/bioinformatics/btac423

By:

Cui, Elvis Han;
Song, Dongyuan;
Wong, Weng Kee;
Li, Jingyi Jessica

Publication type:

Article

Improving biomedical named entity recognition by dynamic caching inter-sentence information.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3976, doi. 10.1093/bioinformatics/btac422

By:

Tong, Yiqi;
Zhuang, Fuzhen;
Zhang, Huajie;
Fang, Chuyu;
Zhao, Yu;
Wang, Deqing;
Zhu, Hengshu;
Ni, Bin

Publication type:

Article

Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred secondary structure and evolutionary-derived mutational coupling.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3900, doi. 10.1093/bioinformatics/btac421

By:

Singh, Jaswinder;
Paliwal, Kuldip;
Litfin, Thomas;
Singh, Jaspreet;
Zhou, Yaoqi

Publication type:

Article

Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3984, doi. 10.1093/bioinformatics/btac420

By:

Almeida, Hayda;
Tsang, Adrian;
Diallo, Abdoulaye Baniré

Publication type:

Article

TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4046, doi. 10.1093/bioinformatics/btac419

By:

Luu, Gordon T;
Freitas, Michael A;
Lizama-Chamu, Itzel;
McCaughey, Catherine S;
Sanchez, Laura M;
Wang, Mingxun

Publication type:

Article

ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3871, doi. 10.1093/bioinformatics/btac418

By:

May, Vinzenz;
Koch, Leonard;
Fischer-Zirnsak, Björn;
Horn, Denise;
Gehle, Petra;
Kornak, Uwe;
Beule, Dieter;
Holtgrewe, Manuel

Publication type:

Article

CancerCellTracker: a brightfield time-lapse microscopy framework for cancer drug sensitivity estimation.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4002, doi. 10.1093/bioinformatics/btac417

By:

Jiang, Qibing;
Sudalagunta, Praneeth;
Silva, Maria C;
Canevarolo, Rafael R;
Zhao, Xiaohong;
Ahmed, Khandakar Tanvir;
Alugubelli, Raghunandan Reddy;
DeAvila, Gabriel;
Tungesvik, Alexandre;
Perez, Lia;
Gatenby, Robert A;
Gillies, Robert J;
Baz, Rachid;
Meads, Mark B;
Shain, Kenneth H;
Silva, Ariosto S;
Zhang, Wei

Publication type:

Article

Variational Bayes for high-dimensional proportional hazards models with applications within gene expression.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3918, doi. 10.1093/bioinformatics/btac416

By:

Komodromos, Michael;
Aboagye, Eric O;
Evangelou, Marina;
Filippi, Sarah;
Ray, Kolyan

Publication type:

Article

Deep learning models for RNA secondary structure prediction (probably) do not generalize across families.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3892, doi. 10.1093/bioinformatics/btac415

By:

Szikszai, Marcell;
Wise, Michael;
Datta, Amitava;
Ward, Max;
Mathews, David H

Publication type:

Article

EasyGDB: a low-maintenance and highly customizable system to develop genomics portals.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4048, doi. 10.1093/bioinformatics/btac412

By:

Fernandez-Pozo, Noe;
Bombarely, Aureliano

Publication type:

Article

Hierarchical reinforcement learning for automatic disease diagnosis.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3995, doi. 10.1093/bioinformatics/btac408

By:

Zhong, Cheng;
Liao, Kangenbei;
Chen, Wei;
Liu, Qianlong;
Peng, Baolin;
Huang, Xuanjing;
Peng, Jiajie;
Wei, Zhongyu

Publication type:

Article