Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 15

Results: 28

Batch alignment via retention orders for preprocessing large-scale multi-batch LC-MS experiments.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3759, doi. 10.1093/bioinformatics/btac407

By:

Malinka, František;
Zareie, Ashkan;
Prochazka, Jan;
Sedlacek, Radislav;
Novosadova, Vendula

Publication type:

Article

MIAMI: mutual information-based analysis of multiplex imaging data.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3818, doi. 10.1093/bioinformatics/btac414

By:

Seal, Souvik;
Ghosh, Debashis

Publication type:

Article

XSI—a genotype compression tool for compressive genomics in large biobanks.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3778, doi. 10.1093/bioinformatics/btac413

By:

Wertenbroek, Rick;
Rubinacci, Simone;
Xenarios, Ioannis;
Thoma, Yann;
Delaneau, Olivier

Publication type:

Article

Practical Haplotype Graph, a platform for storing and using pangenomes for imputation.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3698, doi. 10.1093/bioinformatics/btac410

By:

Bradbury, P J;
Casstevens, T;
Jensen, S E;
Johnson, L C;
Miller, Z R;
Monier, B;
Romay, M C;
Song, B;
Buckler, E S

Publication type:

Article

ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3844, doi. 10.1093/bioinformatics/btac409

By:

Gustavsson, Emil K;
Zhang, David;
Reynolds, Regina H;
Garcia-Ruiz, Sonia;
Ryten, Mina

Publication type:

Article

Functional characterization of co-phosphorylation networks.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3785, doi. 10.1093/bioinformatics/btac406

By:

Ayati, Marzieh;
Yılmaz, Serhan;
Chance, Mark R;
Koyuturk, Mehmet

Publication type:

Article

Identifying interactions in omics data for clinical biomarker discovery using symbolic regression.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3749, doi. 10.1093/bioinformatics/btac405

By:

Christensen, Niels Johan;
Demharter, Samuel;
Machado, Meera;
Pedersen, Lykke;
Salvatore, Marco;
Stentoft-Hansen, Valdemar;
Iglesias, Miquel Triana

Publication type:

Article

Figbird: a probabilistic method for filling gaps in genome assemblies.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3717, doi. 10.1093/bioinformatics/btac404

By:

Tarafder, Sumit;
Islam, Mazharul;
Shatabda, Swakkhar;
Rahman, Atif

Publication type:

Article

Robust identification of temporal biomarkers in longitudinal omics studies.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3802, doi. 10.1093/bioinformatics/btac403

By:

Metwally, Ahmed A;
Zhang, Tom;
Wu, Si;
Kellogg, Ryan;
Zhou, Wenyu;
Contrepois, Kevin;
Tang, Hua;
Snyder, Michael

Publication type:

Article

riboCleaner: a pipeline to identify and quantify rRNA read contamination from RNA-seq data in plants.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3840, doi. 10.1093/bioinformatics/btac402

By:

Huang, Pu;
Davis, Erin;
Cao, Xia;
Cameron, Hunter J

Publication type:

Article

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3734, doi. 10.1093/bioinformatics/btac401

By:

Ye, Cheng;
Thornlow, Bryan;
Hinrichs, Angie;
Kramer, Alexander;
Mirchandani, Cade;
Torvi, Devika;
Lanfear, Robert;
Corbett-Detig, Russell;
Turakhia, Yatish

Publication type:

Article

PrISM: precision for integrative structural models.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3837, doi. 10.1093/bioinformatics/btac400

By:

Ullanat, Varun;
Kasukurthi, Nikhil;
Viswanath, Shruthi

Publication type:

Article

rarefaction-without-resampling extension of PERMANOVA for testing presence–absence associations in the microbiome.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3689, doi. 10.1093/bioinformatics/btac399

By:

Hu, Yi-Juan;
Satten, Glen A

Publication type:

Article

MarkerMAG: linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3684, doi. 10.1093/bioinformatics/btac398

By:

Song, Weizhi;
Zhang, Shan;
Thomas, Torsten

Publication type:

Article

Sequence tagging for biomedical extractive question answering.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3794, doi. 10.1093/bioinformatics/btac397

By:

Yoon, Wonjin;
Jackson, Richard;
Lagerberg, Aron;
Kang, Jaewoo

Publication type:

Article

NetRAX: accurate and fast maximum likelihood phylogenetic network inference.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3725, doi. 10.1093/bioinformatics/btac396

By:

Lutteropp, Sarah;
Scornavacca, Céline;
Kozlov, Alexey M;
Morel, Benoit;
Stamatakis, Alexandros

Publication type:

Article

Shepherd: accurate clustering for correcting DNA barcode errors.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3710, doi. 10.1093/bioinformatics/btac395

By:

Tavakolian, Nik;
Frazão, João Guilherme;
Bendixsen, Devin;
Stelkens, Rike;
Li, Chun-Biu

Publication type:

Article

DrawTetrado to create layer diagrams of G4 structures.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3835, doi. 10.1093/bioinformatics/btac394

By:

Zurkowski, Michal;
Zok, Tomasz;
Szachniuk, Marta

Publication type:

Article

scCNC: a method based on capsule network for clustering scRNA-seq data.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3703, doi. 10.1093/bioinformatics/btac393

By:

Wang, Hai-Yun;
Zhao, Jian-Ping;
Zheng, Chun-Hou;
Su, Yan-Sen

Publication type:

Article

MetBP: a software tool for detection of interaction between metal ion–RNA base pairs.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3833, doi. 10.1093/bioinformatics/btac392

By:

Roy, Parthajit;
Bhattacharyya, Dhananjay

Publication type:

Article

SPEAR: Systematic ProtEin AnnotatoR.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3827, doi. 10.1093/bioinformatics/btac391

By:

Crown, Matthew;
Teruel, Natália;
Najmanovich, Rafael;
Bashton, Matthew

Publication type:

Article

hapCon: estimating contamination of ancient genomes by copying from reference haplotypes.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3768, doi. 10.1093/bioinformatics/btac390

By:

Huang, Yilei;
Ringbauer, Harald

Publication type:

Article

SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3830, doi. 10.1093/bioinformatics/btac389

By:

Ranjan, Piyush;
Brown, Christopher A;
Erb-Downward, John R;
Dickson, Robert P

Publication type:

Article

MiMIR: R-shiny application to infer risk factors and endpoints from Nightingale Health's 1H-NMR metabolomics data.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3847, doi. 10.1093/bioinformatics/btac388

By:

Bizzarri, D;
Reinders, M J T;
Beekman, M;
Slagboom, P E;
Akker, E B van den

Publication type:

Article

Integrative data semantics through a model-enabled data stewardship.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3850, doi. 10.1093/bioinformatics/btac375

By:

Wegner, Philipp;
Schaaf, Sebastian;
Uebachs, Mischa;
Domingo-Fernández, Daniel;
Salimi, Yasamin;
Gebel, Stephan;
Sargsyan, Astghik;
Birkenbihl, Colin;
Springstubbe, Stephan;
Klockgether, Thomas;
Fluck, Juliane;
Hofmann-Apitius, Martin;
Kodamullil, Alpha Tom

Publication type:

Article

Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3677, doi. 10.1093/bioinformatics/btac367

By:

Zheng, Lily;
Niknafs, Noushin;
Wood, Laura D;
Karchin, Rachel;
Scharpf, Robert B

Publication type:

Article

Globally Accessible Distributed Data Sharing (GADDS): a decentralized FAIR platform to facilitate data sharing in the life sciences.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3812, doi. 10.1093/bioinformatics/btac362

By:

Vazquez, Pavel;
Hirayama-Shoji, Kayoko;
Novik, Steffen;
Krauss, Stefan;
Rayner, Simon

Publication type:

Article

NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencing.

Published in:

Bioinformatics, 2022, v. 38, n. 15, p. 3741, doi. 10.1093/bioinformatics/btac359

By:

You, Yupei;
Clark, Michael B;
Shim, Heejung

Publication type:

Article