Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 14

Results: 30

ZipHiC: a novel Bayesian framework to identify enriched interactions and experimental biases in Hi-C data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3523, doi. 10.1093/bioinformatics/btac387

By:

Osuntoki, Itunu G;
Harrison, Andrew;
Dai, Hongsheng;
Bao, Yanchun;
Zabet, Nicolae Radu

Publication type:

Article

RNAsolo: a repository of cleaned PDB-derived RNA 3D structures.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3668, doi. 10.1093/bioinformatics/btac386

By:

Adamczyk, Bartosz;
Antczak, Maciej;
Szachniuk, Marta

Publication type:

Article

Accelerating in silico saturation mutagenesis using compressed sensing.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3557, doi. 10.1093/bioinformatics/btac385

By:

Schreiber, Jacob;
Nair, Surag;
Balsubramani, Akshay;
Kundaje, Anshul

Publication type:

Article

OverProt: secondary structure consensus for protein families.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3648, doi. 10.1093/bioinformatics/btac384

By:

Midlik, Adam;
Vařeková, Ivana Hutařová;
Hutař, Jan;
Chareshneu, Aliaksei;
Berka, Karel;
Svobodová, Radka

Publication type:

Article

Looking at the BiG picture: incorporating bipartite graphs in drug response prediction.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3609, doi. 10.1093/bioinformatics/btac383

By:

Hostallero, David Earl;
Li, Yihui;
Emad, Amin

Publication type:

Article

WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3645, doi. 10.1093/bioinformatics/btac382

By:

Ainciburu, Marina;
Morgan, Duncan M;
DePasquale, Erica A K;
Love, J Christopher;
Prósper, Felipe;
Galen, Peter van

Publication type:

Article

Deep learning for survival analysis in breast cancer with whole slide image data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3629, doi. 10.1093/bioinformatics/btac381

By:

Liu, Huidong;
Kurc, Tahsin

Publication type:

Article

Prediction of allosteric communication pathways in proteins.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3590, doi. 10.1093/bioinformatics/btac380

By:

Haliloglu, Turkan;
Hacisuleyman, Aysima;
Erman, Burak

Publication type:

Article

meGPS: a multi-omics signature for hepatocellular carcinoma detection integrating methylome and transcriptome data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3513, doi. 10.1093/bioinformatics/btac379

By:

Wu, Qiong;
Zheng, Xubin;
Leung, Kwong-Sak;
Wong, Man-Hon;
Tsui, Stephen Kwok-Wing;
Cheng, Lixin

Publication type:

Article

Spectral clustering of single-cell multi-omics data on multilayer graphs.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3600, doi. 10.1093/bioinformatics/btac378

By:

Zhang, Shuyi;
Leistico, Jacob R;
Cho, Raymond J;
Cheng, Jeffrey B;
Song, Jun S

Publication type:

Article

Effective drug–target interaction prediction with mutual interaction neural network.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3582, doi. 10.1093/bioinformatics/btac377

By:

Li, Fei;
Zhang, Ziqiao;
Guan, Jihong;
Zhou, Shuigeng

Publication type:

Article

gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3657, doi. 10.1093/bioinformatics/btac376

By:

Legon, Laurence;
Corre, Christophe;
Bates, Declan G;
Mannan, Ahmad A

Publication type:

Article

Effector-GAN: prediction of fungal effector proteins based on pretrained deep representation learning methods and generative adversarial networks.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3541, doi. 10.1093/bioinformatics/btac374

By:

Wang, Yansu;
Luo, Ximei;
Zou, Quan

Publication type:

Article

DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3501, doi. 10.1093/bioinformatics/btac373

By:

Yang, Dongchan;
Chung, Taesu;
Kim, Dongsup

Publication type:

Article

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3642, doi. 10.1093/bioinformatics/btac372

By:

Shen, Siqi;
Zheng, Ye;
Keleş, Sündüz

Publication type:

Article

CNpare: matching DNA copy number profiles.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3638, doi. 10.1093/bioinformatics/btac371

By:

Chaves-Urbano, Blas;
Hernando, Barbara;
Garcia, Maria J;
Macintyre, Geoff

Publication type:

Article

VOC-alarm: mutation-based prediction of SARS-CoV-2 variants of concern.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3549, doi. 10.1093/bioinformatics/btac370

By:

Zhao, Hongyu;
Han, Kun;
Gao, Chao;
Madhira, Vithal;
Topaloglu, Umit;
Lu, Yong;
Jin, Guangxu

Publication type:

Article

transferGWAS: GWAS of images using deep transfer learning.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3621, doi. 10.1093/bioinformatics/btac369

By:

Kirchler, Matthias;
Konigorski, Stefan;
Norden, Matthias;
Meltendorf, Christian;
Kloft, Marius;
Schurmann, Claudia;
Lippert, Christoph

Publication type:

Article

Palo: spatially aware color palette optimization for single-cell and spatial data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3654, doi. 10.1093/bioinformatics/btac368

By:

Hou, Wenpin;
Ji, Zhicheng

Publication type:

Article

MIO: microRNA target analysis system for immuno-oncology.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3665, doi. 10.1093/bioinformatics/btac366

By:

Monfort-Lanzas, Pablo;
Gronauer, Raphael;
Madersbacher, Leonie;
Schatz, Christoph;
Rieder, Dietmar;
Hackl, Hubert

Publication type:

Article

STracking: a free and open-source Python library for particle tracking and analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3671, doi. 10.1093/bioinformatics/btac365

By:

Prigent, Sylvain;
Valades-Cruz, Cesar Augusto;
Leconte, Ludovic;
Salamero, Jean;
Kervrann, Charles

Publication type:

Article

Metapone: a Bioconductor package for joint pathway testing for untargeted metabolomics data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3662, doi. 10.1093/bioinformatics/btac364

By:

Tian, Leqi;
Li, Zhenjiang;
Ma, Guoxuan;
Zhang, Xiaoyue;
Tang, Ziyin;
Wang, Siheng;
Kang, Jian;
Liang, Donghai;
Yu, Tianwei

Publication type:

Article

CLIPreg: constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3651, doi. 10.1093/bioinformatics/btac363

By:

Kerouanton, Baptiste;
Schäfer, Sebastian;
Ho, Lena;
Chothani, Sonia;
Rackham, Owen J L

Publication type:

Article

adaptive direction-assisted test for microbiome compositional data.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3493, doi. 10.1093/bioinformatics/btac361

By:

Zhang, Wei;
Liu, Aiyi;
Zhang, Zhiwei;
Chen, Guanjie;
Li, Qizhai

Publication type:

Article

On the feasibility of dynamical analysis of network models of biochemical regulation.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3674, doi. 10.1093/bioinformatics/btac360

By:

Rocha, Luis M

Publication type:

Article

mebipred: identifying metal-binding potential in protein sequence.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3532, doi. 10.1093/bioinformatics/btac358

By:

Aptekmann, A A;
Buongiorno, J;
Giovannelli, D;
Glamoclija, M;
Ferreiro, D U;
Bromberg, Y

Publication type:

Article

Prior knowledge facilitates low homologous protein secondary structure prediction with DSM distillation.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3574, doi. 10.1093/bioinformatics/btac351

By:

Wang, Qin;
Wei, Jun;
Zhou, Yuzhe;
Lin, Mingzhi;
Ren, Ruobing;
Wang, Sheng;
Cui, Shuguang;
Li, Zhen

Publication type:

Article

Trying out a million genes to find the perfect pair with RTIST.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3565, doi. 10.1093/bioinformatics/btac349

By:

Zhelezov, Gleb;
Degnan, James H

Publication type:

Article

HyperGraphs.jl: representing higher-order relationships in Julia.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3660, doi. 10.1093/bioinformatics/btac347

By:

Diaz, Léo P M;
Stumpf, Michael P H

Publication type:

Article

Response to the letter to the editor: On the feasibility of dynamical analysis of network models of biochemical regulation.

Published in:

Bioinformatics, 2022, v. 38, n. 14, p. 3676, doi. 10.1093/bioinformatics/btac318

By:

Weidner, Felix M;
Schwab, Julian D;
Werle, Silke D;
Ikonomi, Nensi;
Lausser, Ludwig;
Kestler, Hans A

Publication type:

Article