Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 13

Results: 25

scPreGAN, a deep generative model for predicting the response of single-cell expression to perturbation.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3377, doi. 10.1093/bioinformatics/btac357

By:

Wei, Xiajie;
Dong, Jiayi;
Wang, Fei

Publication type:

Article

MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3429, doi. 10.1093/bioinformatics/btac355

By:

Yu, Huaxu;
Huan, Tao

Publication type:

Article

automated multi-modal graph-based pipeline for mouse genetic discovery.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3385, doi. 10.1093/bioinformatics/btac356

By:

Fang, Zhuoqing;
Peltz, Gary

Publication type:

Article

ExplorATE: a new pipeline to explore active transposable elements from RNA-seq data.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3361, doi. 10.1093/bioinformatics/btac354

By:

Femenias, Martin M;
Santos, Juan C;
Sites, Jack W;
Avila, Luciano J;
Morando, Mariana

Publication type:

Article

Conditional generative modeling for de novo protein design with hierarchical functions.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3454, doi. 10.1093/bioinformatics/btac353

By:

Kucera, Tim;
Togninalli, Matteo;
Meng-Papaxanthos, Laetitia

Publication type:

Article

Predicting protein–peptide binding residues via interpretable deep learning.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3351, doi. 10.1093/bioinformatics/btac352

By:

Wang, Ruheng;
Jin, Junru;
Zou, Quan;
Nakai, Kenta;
Wei, Leyi

Publication type:

Article

webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3488, doi. 10.1093/bioinformatics/btac350

By:

Zhang, Zilong;
Cui, Feifei;
Su, Wei;
Dou, Lijun;
Xu, Anqi;
Cao, Chen;
Zou, Quan

Publication type:

Article

Using the UK Biobank as a global reference of worldwide populations: application to measuring ancestry diversity from GWAS summary statistics.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3477, doi. 10.1093/bioinformatics/btac348

By:

Privé, Florian

Publication type:

Article

Photizo: an open-source library for cross-sample analysis of FTIR spectroscopy data.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3490, doi. 10.1093/bioinformatics/btac346

By:

Grant-Peters, Melissa;
Rich-Griffin, Charlotte;
Grant-Peters, Jonathan E;
Cinque, Gianfelice;
Dendrou, Calliope A

Publication type:

Article

Deep structure integrative representation of multi-omics data for cancer subtyping.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3337, doi. 10.1093/bioinformatics/btac345

By:

Yang, Bo;
Yang, Yan;
Su, Xueping

Publication type:

Article

PeakBot: machine-learning-based chromatographic peak picking.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3422, doi. 10.1093/bioinformatics/btac344

By:

Bueschl, Christoph;
Doppler, Maria;
Varga, Elisabeth;
Seidl, Bernhard;
Flasch, Mira;
Warth, Benedikt;
Zanghellini, Juergen

Publication type:

Article

Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3462, doi. 10.1093/bioinformatics/btac343

By:

Weitz, Philippe;
Wang, Yinxi;
Kartasalo, Kimmo;
Egevad, Lars;
Lindberg, Johan;
Grönberg, Henrik;
Eklund, Martin;
Rantalainen, Mattias

Publication type:

Article

HelixADMET: a robust and endpoint extensible ADMET system incorporating self-supervised knowledge transfer.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3444, doi. 10.1093/bioinformatics/btac342

By:

Zhang, Shanzhuo;
Yan, Zhiyuan;
Huang, Yueyang;
Liu, Lihang;
He, Donglong;
Wang, Wei;
Fang, Xiaomin;
Zhang, Xiaonan;
Wang, Fan;
Wu, Hua;
Wang, Haifeng

Publication type:

Article

CeCaFLUX: the first web server for standardized and visual instationary 13C metabolic flux analysis.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3481, doi. 10.1093/bioinformatics/btac341

By:

Liu, Zhentao;
Zhang, Zhengdong;
Liang, Sheng;
Chen, Zhen;
Xie, Xiaoyao;
Shen, Tie

Publication type:

Article

ScisorWiz: visualizing differential isoform expression in single-cell long-read data.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3474, doi. 10.1093/bioinformatics/btac340

By:

Stein, Alexander N;
Joglekar, Anoushka;
Poon, Chi-Lam;
Tilgner, Hagen U

Publication type:

Article

Examining clustered somatic mutations with SigProfilerClusters.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3470, doi. 10.1093/bioinformatics/btac335

By:

Bergstrom, Erik N;
Kundu, Mousumy;
Tbeileh, Noura;
Alexandrov, Ludmil B

Publication type:

Article

AutoDC: an automatic machine learning framework for disease classification.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3415, doi. 10.1093/bioinformatics/btac334

By:

Bai, Yang;
Li, Yang;
Shen, Yu;
Yang, Mingyu;
Zhang, Wentao;
Cui, Bin

Publication type:

Article

Powerful molecule generation with simple ConvNet.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3438, doi. 10.1093/bioinformatics/btac332

By:

Yu, Hongyang K;
Yu, Hongjiang C

Publication type:

Article

MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3484, doi. 10.1093/bioinformatics/btac331

By:

Strutz, Jonathan;
Shebek, Kevin M;
Broadbelt, Linda J;
Tyo, Keith E J

Publication type:

Article

PersonaDrive: a method for the identification and prioritization of personalized cancer drivers.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3407, doi. 10.1093/bioinformatics/btac329

By:

Erten, Cesim;
Houdjedj, Aissa;
Kazan, Hilal;
Bahmed, Ahmed Amine Taleb

Publication type:

Article

Assessing and assuring interoperability of a genomics file format.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3327, doi. 10.1093/bioinformatics/btac327

By:

Niu, Yi Nian;
Roberts, Eric G;
Denisko, Danielle;
Hoffman, Michael M

Publication type:

Article

Building alternative consensus trees and supertrees using k-means and Robinson and Foulds distance.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3367, doi. 10.1093/bioinformatics/btac326

By:

Tahiri, Nadia;
Fichet, Bernard;
Makarenkov, Vladimir

Publication type:

Article

GLIDER: function prediction from GLIDE-based neighborhoods.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3395, doi. 10.1093/bioinformatics/btac322

By:

Devkota, Kapil;
Schmidt, Henri;
Werenski, Matt;
Murphy, James M;
Erden, Mert;
Arsenescu, Victor;
Cowen, Lenore J

Publication type:

Article

ODGI: understanding pangenome graphs.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3319, doi. 10.1093/bioinformatics/btac308

By:

Guarracino, Andrea;
Heumos, Simon;
Nahnsen, Sven;
Prins, Pjotr;
Garrison, Erik

Publication type:

Article

SPRISS: approximating frequent k-mers by sampling reads, and applications.

Published in:

Bioinformatics, 2022, v. 38, n. 13, p. 3343, doi. 10.1093/bioinformatics/btac180

By:

Santoro, Diego;
Pellegrina, Leonardo;
Comin, Matteo;
Vandin, Fabio

Publication type:

Article