Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 12

Results: 28

CURC: a CUDA-based reference-free read compressor.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3294, doi. 10.1093/bioinformatics/btac333

By:

Xie, Shaohui;
He, Xiaotian;
He, Shan;
Zhu, Zexuan

Publication type:

Article

Kinetochore tracking in 3D from lattice light-sheet imaging data with KiT.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3315, doi. 10.1093/bioinformatics/btac330

By:

Harrison, Jonathan U;
Sen, Onur;
McAinsh, Andrew D;
Burroughs, Nigel J

Publication type:

Article

R package VIGoR for joint estimation of multiple linear learners with variational Bayesian inference.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3306, doi. 10.1093/bioinformatics/btac328

By:

Onogi, Akio;
Arakawa, Aisaku

Publication type:

Article

InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3209, doi. 10.1093/bioinformatics/btac325

By:

Johansson-Åkhe, Isak;
Wallner, Björn

Publication type:

Article

Nezzle: an interactive and programmable visualization of biological networks in Python.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3310, doi. 10.1093/bioinformatics/btac324

By:

Lee, Daewon

Publication type:

Article

DFBP: a comprehensive database of food-derived bioactive peptides for peptidomics research.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3275, doi. 10.1093/bioinformatics/btac323

By:

Qin, Dongya;
Bo, Weichen;
Zheng, Xin;
Hao, Youjin;
Li, Bo;
Zheng, Jie;
Liang, Guizhao

Publication type:

Article

Genomic sequences and RNA-binding proteins predict RNA splicing efficiency in various single-cell contexts.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3231, doi. 10.1093/bioinformatics/btac321

By:

Hou, Ruiyan;
Huang, Yuanghua

Publication type:

Article

Joint registration of multiple point clouds for fast particle fusion in localization microscopy.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3281, doi. 10.1093/bioinformatics/btac320

By:

Wang, Wenxiu;
Heydarian, Hamidreza;
Huijben, Teun A P M;
Stallinga, Sjoerd;
Rieger, Bernd

Publication type:

Article

Exodus: sequencing-based pipeline for quantification of pooled variants.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3288, doi. 10.1093/bioinformatics/btac319

By:

Vainberg-Slutskin, Ilya;
Kowalsman, Noga;
Silberberg, Yael;
Cohen, Tal;
Gold, Jenia;
Kario, Edith;
Weiner, Iddo;
Gahali-Sass, Inbar;
Kredo-Russo, Sharon;
Zak, Naomi B;
Bassan, Merav

Publication type:

Article

RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3304, doi. 10.1093/bioinformatics/btac317

By:

Segura, Joan;
Rose, Yana;
Bittrich, Sebastian;
Burley, Stephen K;
Duarte, Jose M

Publication type:

Article

BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation tools.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3302, doi. 10.1093/bioinformatics/btac316

By:

Bayarri, Genís;
Andrio, Pau;
Hospital, Adam;
Orozco, Modesto;
Gelpí, Josep Lluís

Publication type:

Article

REET: robustness evaluation and enhancement toolbox for computational pathology.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3312, doi. 10.1093/bioinformatics/btac315

By:

Foote, Alex;
Asif, Amina;
Rajpoot, Nasir;
Minhas, Fayyaz

Publication type:

Article

MD DaVis: interactive data visualization of protein molecular dynamics.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3299, doi. 10.1093/bioinformatics/btac314

By:

Maity, Dibyajyoti;
Pal, Debnath

Publication type:

Article

QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3192, doi. 10.1093/bioinformatics/btac313

By:

Jiao, Xiaoli;
Imamichi, Hiromi;
Sherman, Brad T;
Nahar, Rishub;
Dewar, Robin L;
Lane, H Clifford;
Imamichi, Tomozumi;
Chang, Weizhong

Publication type:

Article

OMEN: network-based driver gene identification using mutual exclusivity.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3245, doi. 10.1093/bioinformatics/btac312

By:

Daele, Dries Van;
Weytjens, Bram;
Raedt, Luc De;
Marchal, Kathleen

Publication type:

Article

ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3291, doi. 10.1093/bioinformatics/btac311

By:

Hunt, Martin;
Swann, Jeremy;
Constantinides, Bede;
Fowler, Philip W;
Iqbal, Zamin

Publication type:

Article

new approach to testing mediation of the microbiome at both the community and individual taxon levels.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3173, doi. 10.1093/bioinformatics/btac310

By:

Yue, Ye;
Hu, Yi-Juan

Publication type:

Article

Targeted metabolomics analyses for brain tumor margin assessment during surgery.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3238, doi. 10.1093/bioinformatics/btac309

By:

Cakmakci, Doruk;
Kaynar, Gun;
Bund, Caroline;
Piotto, Martial;
Proust, Francois;
Namer, Izzie Jacques;
Cicek, A Ercument

Publication type:

Article

OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3297, doi. 10.1093/bioinformatics/btac307

By:

Davidson, Russell B;
Woods, Jess;
Effler, T Chad;
Thavappiragasam, Mathialakan;
Mitchell, Julie C;
Parks, Jerry M;
Sedova, Ada

Publication type:

Article

Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3181, doi. 10.1093/bioinformatics/btac306

By:

Garcia-Prieto, Carlos A;
Martínez-Jiménez, Francisco;
Valencia, Alfonso;
Porta-Pardo, Eduard

Publication type:

Article

Imputing dropouts for single-cell RNA sequencing based on multi-objective optimization.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3222, doi. 10.1093/bioinformatics/btac300

By:

Jin, Ke;
Li, Bo;
Yan, Hong;
Zhang, Xiao-Fei

Publication type:

Article

CLIN-X: pre-trained language models and a study on cross-task transfer for concept extraction in the clinical domain.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3267, doi. 10.1093/bioinformatics/btac297

By:

Lange, Lukas;
Adel, Heike;
Strötgen, Jannik;
Klakow, Dietrich

Publication type:

Article

Small molecule generation via disentangled representation learning.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3200, doi. 10.1093/bioinformatics/btac296

By:

Du, Yuanqi;
Guo, Xiaojie;
Wang, Yinkai;
Shehu, Amarda;
Zhao, Liang

Publication type:

Article

Dysregulated ligand–receptor interactions from single-cell transcriptomics.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3216, doi. 10.1093/bioinformatics/btac294

By:

Liu, Qi;
Hsu, Chih-Yuan;
Li, Jia;
Shyr, Yu

Publication type:

Article

Dug: a semantic search engine leveraging peer-reviewed knowledge to query biomedical data repositories.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3252, doi. 10.1093/bioinformatics/btac284

By:

Waldrop, Alexander M;
Cheadle, John B;
Bradford, Kira;
Preiss, Alexander;
Chew, Robert;
Holt, Jonathan R;
Kebede, Yaphet;
Braswell, Nathan;
Watson, Matt;
Hench, Virginia;
Crerar, Andrew;
Ball, Chris M;
Schreep, Carl;
Linebaugh, P J;
Hiles, Hannah;
Boyles, Rebecca;
Bizon, Chris;
Krishnamurthy, Ashok;
Cox, Steve

Publication type:

Article

Tightly integrated multiomics-based deep tensor survival model for time-to-event prediction.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3259, doi. 10.1093/bioinformatics/btac286

By:

Zhang, Jasper Zhongyuan;
Xu, Wei;
Hu, Pingzhao

Publication type:

Article

Exploiting deep transfer learning for the prediction of functional non-coding variants using genomic sequence.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3164, doi. 10.1093/bioinformatics/btac214

By:

Chen, Li;
Wang, Ye;
Zhao, Fengdi

Publication type:

Article

incrementally updatable and scalable system for large-scale sequence search using the Bentley–Saxe transformation.

Published in:

Bioinformatics, 2022, v. 38, n. 12, p. 3155, doi. 10.1093/bioinformatics/btac142

By:

Almodaresi, Fatemeh;
Khan, Jamshed;
Madaminov, Sergey;
Ferdman, Michael;
Johnson, Rob;
Pandey, Prashant;
Patro, Rob

Publication type:

Article