Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 6

Results: 24

RobNorm: model-based robust normalization method for labeled quantitative mass spectrometry proteomics data.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 815, doi. 10.1093/bioinformatics/btaa904

By:

Wang, Meng;
Jiang, Lihua;
Jian, Ruiqi;
Chan, Joanne Y;
Liu, Qing;
Snyder, Michael P;
Tang, Hua

Publication type:

Article

Sapling: accelerating suffix array queries with learned data models.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 744, doi. 10.1093/bioinformatics/btaa911

By:

Kirsche, Melanie;
Das, Arun;
Schatz, Michael C

Publication type:

Article

Single-cell RNA-seq data semi-supervised clustering and annotation via structural regularized domain adaptation.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 775, doi. 10.1093/bioinformatics/btaa908

By:

Chen, Liang;
He, Qiuyan;
Zhai, Yuyao;
Deng, Minghua

Publication type:

Article

Leveraging heterogeneous network embedding for metabolic pathway prediction.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 822, doi. 10.1093/bioinformatics/btaa906

By:

Basher, Abdur Rahman M A;
Hallam, Steven J

Publication type:

Article

Self-supervised feature extraction from image time series in plant phenotyping using triplet networks.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 861, doi. 10.1093/bioinformatics/btaa905

By:

Zapata, Paula A Marin;
Roth, Sina;
Schmutzler, Dirk;
Wolf, Thomas;
Manesso, Erica;
Clevert, Djork-Arné

Publication type:

Article

KIMI: Knockoff Inference for Motif Identification from molecular sequences with controlled false discovery rate.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 759, doi. 10.1093/bioinformatics/btaa912

By:

Bai, Xin;
Ren, Jie;
Fan, Yingying;
Sun, Fengzhu

Publication type:

Article

VirPreNet: a weighted ensemble convolutional neural network for the virulence prediction of influenza A virus using all eight segments.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 737, doi. 10.1093/bioinformatics/btaa901

By:

Yin, Rui;
Luo, Zihan;
Zhuang, Pei;
Lin, Zhuoyi;
Kwoh, Chee Keong

Publication type:

Article

A pseudotemporal causality approach to identifying miRNA–mRNA interactions during biological processes.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 807, doi. 10.1093/bioinformatics/btaa899

By:

Cifuentes-Bernal, Andres M;
Pham, Vu Vh;
Li, Xiaomei;
Liu, Lin;
Li, Jiuyong;
Le, Thuc Duy

Publication type:

Article

Accurate and efficient gene function prediction using a multi-bacterial network.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 800, doi. 10.1093/bioinformatics/btaa885

By:

Law, Jeffrey N;
Kale, Shiv D;
Murali, T M

Publication type:

Article

Learning graph representations of biochemical networks and its application to enzymatic link prediction.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 793, doi. 10.1093/bioinformatics/btaa881

By:

Jiang, Julie;
Liu, Li-Ping;
Hassoun, Soha

Publication type:

Article

Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 750, doi. 10.1093/bioinformatics/btaa887

By:

Tang, Runbin;
Yu, Zuguo;
Ma, Yuanlin;
Wu, Yaoqun;
Chen, Yi-Ping Phoebe;
Wong, Limsoon;
Li, Jinyan

Publication type:

Article

Unpaired data empowers association tests.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 785, doi. 10.1093/bioinformatics/btaa886

By:

Gong, Mingming;
Liu, Peng;
Sciurba, Frank C;
Stojanov, Petar;
Tao, Dacheng;
Tseng, George C;
Zhang, Kun;
Batmanghelich, Kayhan

Publication type:

Article

MolTrans: Molecular Interaction Transformer for drug–target interaction prediction.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 830, doi. 10.1093/bioinformatics/btaa880

By:

Huang, Kexin;
Xiao, Cao;
Glass, Lucas M;
Sun, Jimeng

Publication type:

Article

The effect of statistical normalization on network propagation scores.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 845, doi. 10.1093/bioinformatics/btaa896

By:

Picart-Armada, Sergio;
Thompson, Wesley K;
Buil, Alfonso;
Perera-Lluna, Alexandre

Publication type:

Article

A novel estimator of the interaction matrix in Graphical Gaussian Model of omics data using the entropy of non-equilibrium systems.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 837, doi. 10.1093/bioinformatics/btaa894

By:

Borzou, Ahmad;
Sadygov, Rovshan G

Publication type:

Article

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 882, doi. 10.1093/bioinformatics/btaa755

By:

Andreatta, Massimo;
Carmona, Santiago J

Publication type:

Article

Decombinator V4: an improved AIRR compliant-software package for T-cell receptor sequence annotation?

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 876, doi. 10.1093/bioinformatics/btaa758

By:

Peacock, Thomas;
Heather, James M;
Ronel, Tahel;
Chain, Benny

Publication type:

Article

Predicting candidate genes from phenotypes, functions and anatomical site of expression.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 853, doi. 10.1093/bioinformatics/btaa879

By:

Chen, Jun;
Althagafi, Azza;
Hoehndorf, Robert

Publication type:

Article

MOSAIC: a joint modeling methodology for combined circadian and non-circadian analysis of multi-omics data.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 767, doi. 10.1093/bioinformatics/btaa877

By:

Santos, Hannah De los;
Bennett, Kristin P;
Hurley, Jennifer M

Publication type:

Article

CaNDis: a web server for investigation of causal relationships between diseases, drugs and drug targets.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 885, doi. 10.1093/bioinformatics/btaa762

By:

Škrlj, Blaž;
Eržen, Nika;
Lavrač, Nada;
Kunej, Tanja;
Konc, Janez

Publication type:

Article

RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 873, doi. 10.1093/bioinformatics/btaa754

By:

Yin, Zekun;
Xu, Xiaoming;
Zhang, Jinxiao;
Wei, Yanjie;
Schmidt, Bertil;
Liu, Weiguo

Publication type:

Article

REscan: inferring repeat expansions and structural variation in paired-end short read sequencing data.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 871, doi. 10.1093/bioinformatics/btaa753

By:

McLaughlin, Russell Lewis

Publication type:

Article

CABEAN: a software for the control of asynchronous Boolean networks.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 879, doi. 10.1093/bioinformatics/btaa752

By:

Su, Cui;
Pang, Jun

Publication type:

Article

SPEARS: Standard Performance Evaluation of Ancestral haplotype Reconstruction through Simulation.

Published in:

Bioinformatics, 2021, v. 37, n. 6, p. 868, doi. 10.1093/bioinformatics/btaa749

By:

Manching, Heather;
Wisser, Randall J

Publication type:

Article