Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 4

Results: 23

COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 586, doi. 10.1093/bioinformatics/btaa718

By:

Korn, Daniel;
Bobrowski, Tesia;
Li, Michael;
Kebede, Yaphet;
Wang, Patrick;
Owen, Phillips;
Vaidya, Gaurav;
Muratov, Eugene;
Chirkova, Rada;
Bizon, Chris;
Tropsha, Alexander

Publication type:

Article

EpiDope: a deep neural network for linear B-cell epitope prediction.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 448, doi. 10.1093/bioinformatics/btaa773

By:

Collatz, Maximilian;
Mock, Florian;
Barth, Emanuel;
Hölzer, Martin;
Sachse, Konrad;
Marz, Manja

Publication type:

Article

DREIMT: a drug repositioning database and prioritization tool for immunomodulation.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 578, doi. 10.1093/bioinformatics/btaa727

By:

Troulé, Kevin;
López-Fernández, Hugo;
García-Martín, Santiago;
Reboiro-Jato, Miguel;
Carretero-Puche, Carlos;
Martorell-Marugán, Jordi;
Martín-Serrano, Guillermo;
Carmona-Sáez, Pedro;
Glez-Peña, Daniel;
Al-Shahrour, Fátima;
Gómez-López, Gonzalo

Publication type:

Article

Fold recognition by scoring protein maps using the congruence coefficient.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 506, doi. 10.1093/bioinformatics/btaa833

By:

Lena, Pietro Di;
Baldi, Pierre

Publication type:

Article

Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 439, doi. 10.1093/bioinformatics/btaa830

By:

Schreiber, Jacob;
Bilmes, Jeffrey

Publication type:

Article

Neighbourhoods in the yeast regulatory network in different physiological states.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 551, doi. 10.1093/bioinformatics/btaa831

By:

Lesk, Arthur M;
Konagurthu, Arun S

Publication type:

Article

IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 522, doi. 10.1093/bioinformatics/btaa829

By:

Li, Hong-Dong;
Yang, Changhuo;
Zhang, Zhimin;
Yang, Mengyun;
Wu, Fang-Xiang;
Omenn, Gilbert S;
Wang, Jianxin

Publication type:

Article

Text mining for modeling of protein complexes enhanced by machine learning.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 497, doi. 10.1093/bioinformatics/btaa823

By:

Badal, Varsha D;
Kundrotas, Petras J;
Vakser, Ilya A

Publication type:

Article

A novel sequence alignment algorithm based on deep learning of the protein folding code.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 490, doi. 10.1093/bioinformatics/btaa810

By:

Gao, Mu;
Skolnick, Jeffrey

Publication type:

Article

AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 559, doi. 10.1093/bioinformatics/btaa780

By:

Baharlou, Heeva;
Canete, Nicolas P;
Bertram, Kirstie M;
Sandgren, Kerrie J;
Cunningham, Anthony L;
Harman, Andrew N;
Patrick, Ellis

Publication type:

Article

Inference of viral quasispecies with a paired de Bruijn graph.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 473, doi. 10.1093/bioinformatics/btaa782

By:

Freire, Borja;
Ladra, Susana;
Paramá, Jose R;
Salmela, Leena

Publication type:

Article

CoLiDe: Combinatorial Library Design tool for probing protein sequence space.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 482, doi. 10.1093/bioinformatics/btaa804

By:

Tretyachenko, Vyacheslav;
Voráček, Václav;
Souček, Radko;
Fujishima, Kosuke;
Hlouchová, Klára

Publication type:

Article

Shark: fishing relevant reads in an RNA-Seq sample.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 464, doi. 10.1093/bioinformatics/btaa779

By:

Denti, Luca;
Pirola, Yuri;
Previtali, Marco;
Ceccato, Tamara;
Vedova, Gianluca Della;
Rizzi, Raffaella;
Bonizzoni, Paola

Publication type:

Article

MELODI Presto: a fast and agile tool to explore semantic triples derived from biomedical literature.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 583, doi. 10.1093/bioinformatics/btaa726

By:

Elsworth, Benjamin;
Gaunt, Tom R

Publication type:

Article

NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 580, doi. 10.1093/bioinformatics/btaa723

By:

Nagpal, Sunil;
Kuntal, Bhusan K;
Mande, Sharmila S

Publication type:

Article

MR-Clust: clustering of genetic variants in Mendelian randomization with similar causal estimates.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 531, doi. 10.1093/bioinformatics/btaa778

By:

Foley, Christopher N;
Mason, Amy M;
Kirk, Paul D W;
Burgess, Stephen

Publication type:

Article

Fast gap-affine pairwise alignment using the wavefront algorithm.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 456, doi. 10.1093/bioinformatics/btaa777

By:

Marco-Sola, Santiago;
Moure, Juan Carlos;
Moreto, Miquel;
Espinosa, Antonio

Publication type:

Article

Incorporating prior knowledge into regularized regression.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 514, doi. 10.1093/bioinformatics/btaa776

By:

Zeng, Chubing;
Thomas, Duncan Campbell;
Lewinger, Juan Pablo

Publication type:

Article

HiSCF: leveraging higher-order structures for clustering analysis in biological networks.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 542, doi. 10.1093/bioinformatics/btaa775

By:

Hu, Lun;
Zhang, Jun;
Pan, Xiangyu;
Yan, Hong;
You, Zhu-Hong

Publication type:

Article

RabbitQC: high-speed scalable quality control for sequencing data.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 573, doi. 10.1093/bioinformatics/btaa719

By:

Yin, Zekun;
Zhang, Hao;
Liu, Meiyang;
Zhang, Wen;
Song, Honglei;
Lan, Haidong;
Wei, Yanjie;
Niu, Beifang;
Schmidt, Bertil;
Liu, Weiguo

Publication type:

Article

HaploGrouper: a generalized approach to haplogroup classification.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 570, doi. 10.1093/bioinformatics/btaa729

By:

Jagadeesan, Anuradha;
Ebenesersdóttir, S Sunna;
Guðmundsdóttir, Valdis B;
Thordardottir, Elisabet Linda;
Moore, Kristjan H S;
Helgason, Agnar

Publication type:

Article

mixtureS: a novel tool for bacterial strain genome reconstruction from reads.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 575, doi. 10.1093/bioinformatics/btaa728

By:

Li, Xin;
Hu, Haiyan;
Li, Xiaoman

Publication type:

Article

Mutation-Simulator: fine-grained simulation of random mutations in any genome.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 568, doi. 10.1093/bioinformatics/btaa716

By:

Kühl, M A;
Stich, B;
Ries, D C

Publication type:

Article