Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 18
Results: 59
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2866, doi. 10.1093/bioinformatics/btab219
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BLight: efficient exact associative structure for k-mers.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2858, doi. 10.1093/bioinformatics/btab217
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A critical assessment of gene catalogs for metagenomic analysis.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2848, doi. 10.1093/bioinformatics/btab216
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CoCoNet: an efficient deep learning tool for viral metagenome binning.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2803, doi. 10.1093/bioinformatics/btab213
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L<sub>2,1</sub>-norm regularized multivariate regression model with applications to genomic prediction.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2896, doi. 10.1093/bioinformatics/btab212
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SumGNN: multi-typed drug interaction prediction via efficient knowledge graph summarization.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2988, doi. 10.1093/bioinformatics/btab207
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ZEAL: protein structure alignment based on shape similarity.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2874, doi. 10.1093/bioinformatics/btab205
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A convolutional neural network and graph convolutional network-based method for predicting the classification of anatomical therapeutic chemicals.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2841, doi. 10.1093/bioinformatics/btab204
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STREME: accurate and versatile sequence motif discovery.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2834, doi. 10.1093/bioinformatics/btab203
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Quantification of cell behaviors and computational modeling show that cell directional behaviors drive zebrafish pectoral fin morphogenesis.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2946, doi. 10.1093/bioinformatics/btab201
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TALE: Transformer-based protein function Annotation with joint sequence–Label Embedding.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2825, doi. 10.1093/bioinformatics/btab198
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FraGAT: a fragment-oriented multi-scale graph attention model for molecular property prediction.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2981, doi. 10.1093/bioinformatics/btab195
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Probabilistic thermodynamic analysis of metabolic networks.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2938, doi. 10.1093/bioinformatics/btab194
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HiG2Vec: hierarchical representations of Gene Ontology and genes in the Poincaré ball.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2971, doi. 10.1093/bioinformatics/btab193
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Improving deconvolution methods in biology through open innovation competitions: an application to the connectivity map.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2889, doi. 10.1093/bioinformatics/btab192
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Drug repurposing against breast cancer by integrating drug-exposure expression profiles and drug–drug links based on graph neural network.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2930, doi. 10.1093/bioinformatics/btab191
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LocusZoom.js: interactive and embeddable visualization of genetic association study results.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3017, doi. 10.1093/bioinformatics/btab186
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GPDBN: deep bilinear network integrating both genomic data and pathological images for breast cancer prognosis prediction.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2963, doi. 10.1093/bioinformatics/btab185
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Fast and sensitive taxonomic assignment to metagenomic contigs.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3029, doi. 10.1093/bioinformatics/btab184
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HCMMCNVs: hierarchical clustering mixture model of copy number variants detection using whole exome sequencing technology.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3026, doi. 10.1093/bioinformatics/btab183
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Multiscale part mutual information for quantifying nonlinear direct associations in networks.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2920, doi. 10.1093/bioinformatics/btab182
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Detecting m<sup>6</sup>A methylation regions from Methylated RNA Immunoprecipitation Sequencing.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2818, doi. 10.1093/bioinformatics/btab181
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POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3041, doi. 10.1093/bioinformatics/btab180
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ExperimentSubset: an R package to manage subsets of Bioconductor Experiment objects.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3058, doi. 10.1093/bioinformatics/btab179
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PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2882, doi. 10.1093/bioinformatics/btab178
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Queueing theory model of Krebs cycle.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2912, doi. 10.1093/bioinformatics/btab177
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FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3038, doi. 10.1093/bioinformatics/btab176
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Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2905, doi. 10.1093/bioinformatics/btab175
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Polypharmacy side-effect prediction with enhanced interpretability based on graph feature attention network.
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- Bioinformatics, 2021, v. 37, n. 18, p. 2955, doi. 10.1093/bioinformatics/btab174
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BART3D: inferring transcriptional regulators associated with differential chromatin interactions from Hi-C data.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3075, doi. 10.1093/bioinformatics/btab173
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Tumor IsomiR Encyclopedia (TIE): a pan-cancer database of miRNA isoforms.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3023, doi. 10.1093/bioinformatics/btab172
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Integrative transcription start site identification with iTiSS.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3056, doi. 10.1093/bioinformatics/btab170
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LSTrAP-Kingdom: an automated pipeline to generate annotated gene expression atlases for kingdoms of life.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3053, doi. 10.1093/bioinformatics/btab168
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DCI: learning causal differences between gene regulatory networks.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3067, doi. 10.1093/bioinformatics/btab167
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FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3088, doi. 10.1093/bioinformatics/btab160
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Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3051, doi. 10.1093/bioinformatics/btab159
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Megadepth: efficient coverage quantification for BigWigs and BAMs.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3014, doi. 10.1093/bioinformatics/btab152
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multiTFA: a Python package for multi-variate thermodynamics-based flux analysis.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3064, doi. 10.1093/bioinformatics/btab151
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pgainsim: an R-package to assess the mode of inheritance for quantitative trait loci in GWAS.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3061, doi. 10.1093/bioinformatics/btab150
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Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3035, doi. 10.1093/bioinformatics/btab149
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S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3011, doi. 10.1093/bioinformatics/btab148
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DeepS: a web server for image optical sectioning and super resolution microscopy based on a deep learning framework.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3086, doi. 10.1093/bioinformatics/btab144
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ASimulatoR: splice-aware RNA-Seq data simulation.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3008, doi. 10.1093/bioinformatics/btab142
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RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3048, doi. 10.1093/bioinformatics/btab135
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HeteroGGM: an R package for Gaussian graphical model-based heterogeneity analysis.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3073, doi. 10.1093/bioinformatics/btab134
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Bali-Phy version 3: model-based co-estimation of alignment and phylogeny.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3032, doi. 10.1093/bioinformatics/btab129
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PICS2: next-generation fine mapping via probabilistic identification of causal SNPs.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3004, doi. 10.1093/bioinformatics/btab122
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An enhanced loss function simplifies the deep learning model for characterizing the 3D organoid models.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3084, doi. 10.1093/bioinformatics/btab120
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QuArray: an application for tissue array whole slide image export and signal analysis.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3082, doi. 10.1093/bioinformatics/btab119
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MitoFlex: an efficient, high-performance toolkit for animal mitogenome assembly, annotation and visualization.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3001, doi. 10.1093/bioinformatics/btab111
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