Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 14/15

Results: 27

Corrigendum to: HRIBO: high-throughput analysis of bacterial ribosome profiling data.

Published in:: Bioinformatics, 2021, v. 37, n. 14/15, p. 2079, doi. 10.1093/bioinformatics/btab256
Publication type:: Article

Information theoretic generalized Robinson–Foulds metrics for comparing phylogenetic trees.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2077, doi. 10.1093/bioinformatics/btab200

By:

Smith, Martin R

Publication type:

Article

muCNV: genotyping structural variants for population-level sequencing.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2055, doi. 10.1093/bioinformatics/btab199

By:

Jun, Goo;
Sedlazeck, Fritz;
Zhu, Qihui;
English, Adam;
Metcalf, Ginger;
Kang, Hyun Min;
(HGSVC), Human Genome Structural Variation Consortium;
Lee, Charles;
Gibbs, Richard;
Boerwinkle, Eric

Publication type:

Article

Enzyme promiscuity prediction using hierarchy-informed multi-label classification.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2017, doi. 10.1093/bioinformatics/btab054

By:

Visani, Gian Marco;
Hughes, Michael C;
Hassoun, Soha

Publication type:

Article

Biophysical informatics approach for quantifying phenotypic heterogeneity in cancer cell migration in confined microenvironments.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2042, doi. 10.1093/bioinformatics/btab053

By:

Zhang, Xingjian;
Mak, Michael

Publication type:

Article

Narrative scientific data visualization in an immersive environment.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2033, doi. 10.1093/bioinformatics/btab052

By:

Liu, Richen;
Wang, Hailong;
Zhang, Chuyu;
Chen, Xiaojian;
Wang, Lijun;
Ji, Genlin;
Zhao, Bin;
Mao, Zhiwei;
Yang, Dan

Publication type:

Article

McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2004, doi. 10.1093/bioinformatics/btab050

By:

Alqassem, Israa;
Sonthalia, Yash;
Klitzke-Feser, Erika;
Shim, Heejung;
Canzar, Stefan

Publication type:

Article

De novo genome assembly of Solanum sitiens reveals structural variation associated with drought and salinity tolerance.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1941, doi. 10.1093/bioinformatics/btab048

By:

Molitor, Corentin;
Kurowski, Tomasz J;
Almeida, Pedro M Fidalgo de;
Eerolla, Pramod;
Spindlow, Daniel J;
Kashyap, Sarvesh P;
Singh, Bijendra;
Prasanna, H C;
Thompson, Andrew J;
Mohareb, Fady R

Publication type:

Article

ICN: extracting interconnected communities in gene co-expression networks.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1997, doi. 10.1093/bioinformatics/btab047

By:

Wu, Qiong;
Ma, Tianzhou;
Liu, Qingzhi;
Milton, Donald K;
Zhang, Yuan;
Chen, Shuo

Publication type:

Article

A gene-level methylome-wide association analysis identifies novel Alzheimer's disease genes.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1933, doi. 10.1093/bioinformatics/btab045

By:

Wu, Chong;
Bradley, Jonathan;
Li, Yanming;
Wu, Lang;
Deng, Hong-Wen

Publication type:

Article

Comparison of observation-based and model-based identification of alert concentrations from concentration–expression data.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1990, doi. 10.1093/bioinformatics/btab043

By:

Kappenberg, Franziska;
Grinberg, Marianna;
Jiang, Xiaoqi;
Kopp-Schneider, Annette;
Hengstler, Jan G;
Rahnenführer, Jörg

Publication type:

Article

Robust gene coexpression networks using signed distance correlation.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1982, doi. 10.1093/bioinformatics/btab041

By:

Pardo-Diaz, Javier;
Bozhilova, Lyuba V;
Beguerisse-Díaz, Mariano;
Poole, Philip S;
Deane, Charlotte M;
Reinert, Gesine

Publication type:

Article

A semisupervised model to predict regulatory effects of genetic variants at single nucleotide resolution using massively parallel reporter assays.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1953, doi. 10.1093/bioinformatics/btab040

By:

Yang, Zikun;
Wang, Chen;
Erjavec, Stephanie;
Petukhova, Lynn;
Christiano, Angela;
Ionita-Laza, Iuliana

Publication type:

Article

Using single-cell cytometry to illustrate integrated multi-perspective evaluation of clustering algorithms using Pareto fronts.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1972, doi. 10.1093/bioinformatics/btab038

By:

Putri, Givanna H;
Koprinska, Irena;
Ashhurst, Thomas M;
King, Nicholas J C;
Read, Mark N

Publication type:

Article

Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2025, doi. 10.1093/bioinformatics/btab036

By:

Zhang, Yang;
Liu, Tianyuan;
Wang, Jing;
Zou, Bohao;
Li, Le;
Yao, Linhui;
Chen, Kechen;
Ning, Lin;
Wu, Bingyi;
Zhao, Xiaoyang;
Wang, Dong

Publication type:

Article

SWOTein: a structure-based approach to predict stability Strengths and Weaknesses of prOTEINs.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1963, doi. 10.1093/bioinformatics/btab034

By:

Hou, Qingzhen;
Pucci, Fabrizio;
Ancien, François;
Kwasigroch, Jean Marc;
Bourgeas, Raphaël;
Rooman, Marianne

Publication type:

Article

HRIBO: high-throughput analysis of bacterial ribosome profiling data.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2061, doi. 10.1093/bioinformatics/btaa959

By:

Gelhausen, Rick;
Svensson, Sarah L;
Froschauer, Kathrin;
Heyl, Florian;
Hadjeras, Lydia;
Sharma, Cynthia M;
Eggenhofer, Florian;
Backofen, Rolf

Publication type:

Article

EWASex: an efficient R-package to predict sex in epigenome-wide association studies.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2075, doi. 10.1093/bioinformatics/btaa949

By:

Lund, Jesper Beltoft;
Li, Weilong;
Mohammadnejad, Afsaneh;
Li, Shuxia;
Baumbach, Jan;
Tan, Qihua

Publication type:

Article

COSIFER: a Python package for the consensus inference of molecular interaction networks.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2070, doi. 10.1093/bioinformatics/btaa942

By:

Manica, Matteo;
Bunne, Charlotte;
Mathis, Roland;
Cadow, Joris;
Ahsen, Mehmet Eren;
Stolovitzky, Gustavo A;
Martínez, María Rodríguez

Publication type:

Article

Mortality Tracker: the COVID-19 case for real time web APIs as epidemiology commons.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2073, doi. 10.1093/bioinformatics/btaa933

By:

Almeida, Jonas S;
Shiels, Meredith;
Bhawsar, Praphulla;
Patel, Bhaumik;
Nemeth, Erika;
Moffitt, Richard;
Closas, Montserrat Garcia;
Freedman, Neal;
Berrington, Amy

Publication type:

Article

quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2064, doi. 10.1093/bioinformatics/btaa925

By:

Mallet, Vincent;
Nilges, Michael;
Bouvier, Guillaume

Publication type:

Article

Scool: a new data storage format for single-cell Hi-C data.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2053, doi. 10.1093/bioinformatics/btaa924

By:

Wolff, Joachim;
Abdennur, Nezar;
Backofen, Rolf;
Grüning, Björn

Publication type:

Article

amPEPpy 1.0: a portable and accurate antimicrobial peptide prediction tool.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2058, doi. 10.1093/bioinformatics/btaa917

By:

Lawrence, Travis J;
Carper, Dana L;
Spangler, Margaret K;
Carrell, Alyssa A;
Rush, Tomás A;
Minter, Stephen J;
Weston, David J;
Labbé, Jessy L

Publication type:

Article

GNET2: an R package for constructing gene regulatory networks from transcriptomic data.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2068, doi. 10.1093/bioinformatics/btaa902

By:

Chen, Chen;
Hou, Jie;
Shi, Xiaowen;
Yang, Hua;
Birchler, James A;
Cheng, Jianlin

Publication type:

Article

obaDIA: one-step biological analysis pipeline for data-independent acquisition and other quantitative proteomics data.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2066, doi. 10.1093/bioinformatics/btaa893

By:

Yan, Jun;
Zhai, Hongning;
Zhu, Ling;
Sa, Sasha;
Ding, Xiaojun

Publication type:

Article

Succinct dynamic de Bruijn graphs.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 1946, doi. 10.1093/bioinformatics/btaa546

By:

Alipanahi, Bahar;
Kuhnle, Alan;
Puglisi, Simon J;
Salmela, Leena;
Boucher, Christina

Publication type:

Article

Predictive and interpretable models via the stacked elastic net.

Published in:

Bioinformatics, 2021, v. 37, n. 14/15, p. 2012, doi. 10.1093/bioinformatics/btaa535

By:

Rauschenberger, Armin;
Glaab, Enrico;
Wiel, Mark A van de

Publication type:

Article