Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 12

Results: 27

Alignment-free Genomic Analysis via a Big Data Spark Platform.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1658, doi. 10.1093/bioinformatics/btab014

By:

Petrillo, Umberto Ferraro;
Palini, Francesco;
Cattaneo, Giuseppe;
Giancarlo, Raffaele

Publication type:

Article

A rarefaction-based extension of the LDM for testing presence–absence associations in the microbiome.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1652, doi. 10.1093/bioinformatics/btab012

By:

Hu, Yi-Juan;
Lane, Andrea;
Satten, Glen A

Publication type:

Article

V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1673, doi. 10.1093/bioinformatics/btab015

By:

Posada-Céspedes, Susana;
Seifert, David;
Topolsky, Ivan;
Jablonski, Kim Philipp;
Metzner, Karin J;
Beerenwinkel, Niko

Publication type:

Article

EpiDope: a deep neural network for linear B-cell epitope prediction.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1784, doi. 10.1093/bioinformatics/btab390

By:

Collatz, Maximilian;
Mock, Florian;
Barth, Emanuel;
Hölzer, Martin;
Sachse, Konrad;
Marz, Manja

Publication type:

Article

CLUE: exact maximal reduction of kinetic models by constrained lumping of differential equations.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1732, doi. 10.1093/bioinformatics/btab010

By:

Ovchinnikov, Alexey;
Verona, Isabel Pérez;
Pogudin, Gleb;
Tribastone, Mirco

Publication type:

Article

DeepSurf: a surface-based deep learning approach for the prediction of ligand binding sites on proteins.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1681, doi. 10.1093/bioinformatics/btab009

By:

Mylonas, Stelios K;
Axenopoulos, Apostolos;
Daras, Petros

Publication type:

Article

Corrigendum to: ASpli: Integrative analysis of splicing landscapes through RNA-Seq assays.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1783, doi. 10.1093/bioinformatics/btab345

By:

Mancini, Estefania;
Rabinovich, Andres;
Iserte, Javier;
Yanovsky, Marcelo;
Chernomoretz, Ariel

Publication type:

Article

Compression of quantification uncertainty for scRNA-seq counts.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1699, doi. 10.1093/bioinformatics/btab001

By:

Buren, Scott Van;
Sarkar, Hirak;
Srivastava, Avi;
Rashid, Naim U;
Patro, Rob;
Love, Michael I

Publication type:

Article

Genome-scale de novo assembly using ALGA.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1644, doi. 10.1093/bioinformatics/btab005

By:

Swat, Sylwester;
Laskowski, Artur;
Badura, Jan;
Frohmberg, Wojciech;
Wojciechowski, Pawel;
Swiercz, Aleksandra;
Kasprzak, Marta;
Blazewicz, Jacek

Publication type:

Article

COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1761, doi. 10.1093/bioinformatics/btaa871

By:

Lemoine, Frédéric;
Blassel, Luc;
Voznica, Jakub;
Gascuel, Olivier

Publication type:

Article

Identifiers.org: Compact Identifier services in the cloud.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1781, doi. 10.1093/bioinformatics/btaa864

By:

Bernal-Llinares, Manuel;
Ferrer-Gómez, Javier;
Juty, Nick;
Goble, Carole;
Wimalaratne, Sarala M;
Hermjakob, Henning

Publication type:

Article

Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1724, doi. 10.1093/bioinformatics/btaa998

By:

Bach, Eric;
Rogers, Simon;
Williamson, John;
Rousu, Juho

Publication type:

Article

GalaxyCloudRunner: enhancing scalable computing for Galaxy.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1763, doi. 10.1093/bioinformatics/btaa860

By:

Goonasekera, Nuwan;
Mahmoud, Alexandru;
Chilton, John;
Afgan, Enis

Publication type:

Article

GeneReg: a constraint-based approach for design of feasible metabolic engineering strategies at the gene level.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1717, doi. 10.1093/bioinformatics/btaa996

By:

Razaghi-Moghadam, Zahra;
Nikoloski, Zoran

Publication type:

Article

MAGUS: Multiple sequence Alignment using Graph clUStering.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1666, doi. 10.1093/bioinformatics/btaa992

By:

Smirnov, Vladimir;
Warnow, Tandy

Publication type:

Article

A framework for modeling epistatic interaction.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1708, doi. 10.1093/bioinformatics/btaa990

By:

Blumenthal, David B;
Baumbach, Jan;
Hoffmann, Markus;
Kacprowski, Tim;
List, Markus

Publication type:

Article

Using drug descriptions and molecular structures for drug–drug interaction extraction from literature.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1739, doi. 10.1093/bioinformatics/btaa907

By:

Asada, Masaki;
Miwa, Makoto;
Sasaki, Yutaka

Publication type:

Article

HOPS: high-performance library for (non-)uniform sampling of convex-constrained models.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1776, doi. 10.1093/bioinformatics/btaa872

By:

Jadebeck, Johann F;
Theorell, Axel;
Leweke, Samuel;
Nöh, Katharina

Publication type:

Article

methylclock: a Bioconductor package to estimate DNA methylation age.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1759, doi. 10.1093/bioinformatics/btaa825

By:

Pelegí-Sisó, Dolors;
Prado, Paula de;
Ronkainen, Justiina;
Bustamante, Mariona;
González, Juan R

Publication type:

Article

PheWAS-ME: a web-app for interactive exploration of multimorbidity patterns in PheWAS.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1778, doi. 10.1093/bioinformatics/btaa870

By:

Strayer, Nick;
Shirey-Rice, Jana K;
Shyr, Yu;
Denny, Joshua C;
Pulley, Jill M;
Xu, Yaomin

Publication type:

Article

MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1766, doi. 10.1093/bioinformatics/btaa868

By:

Rhodes, John A;
Baños, Hector;
Mitchell, Jonathan D;
Allman, Elizabeth S

Publication type:

Article

Varmole: a biologically drop-connect deep neural network model for prioritizing disease risk variants and genes.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1772, doi. 10.1093/bioinformatics/btaa866

By:

Nguyen, Nam D;
Jin, Ting;
Wang, Daifeng

Publication type:

Article

Machine-OlF-Action: a unified framework for developing and interpreting machine-learning models for chemosensory research.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1769, doi. 10.1093/bioinformatics/btaa1104

By:

Gupta, Anku;
Choudhary, Mohit;
Mohanty, Sanjay Kumar;
Mittal, Aayushi;
Gupta, Krishan;
Arya, Aditya;
Kumar, Suvendu;
Katyayan, Nikhil;
Dixit, Nilesh Kumar;
Kalra, Siddhant;
Goel, Manshi;
Sahni, Megha;
Singhal, Vrinda;
Mishra, Tripti;
Sengupta, Debarka;
Ahuja, Gaurav

Publication type:

Article

SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1756, doi. 10.1093/bioinformatics/btaa1039

By:

Chen, Zhanlin;
Zhang, Jing;
Liu, Jason;
Zhang, Zixuan;
Zhu, Jiangqi;
Lee, Donghoon;
Xu, Min;
Gerstein, Mark

Publication type:

Article

Single-cell systems analysis: decision geometry in outliers.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1747, doi. 10.1093/bioinformatics/btaa1078

By:

Abrahams, Lianne

Publication type:

Article

Identification of differentially expressed gene modules in heterogeneous diseases.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1691, doi. 10.1093/bioinformatics/btaa1038

By:

Zolotareva, Olga;
Khakabimamaghani, Sahand;
Isaeva, Olga I;
Chervontseva, Zoe;
Savchik, Alexey;
Ester, Martin

Publication type:

Article

Liftoff: accurate mapping of gene annotations.

Published in:

Bioinformatics, 2021, v. 37, n. 12, p. 1639, doi. 10.1093/bioinformatics/btaa1016

By:

Shumate, Alaina;
Salzberg, Steven L

Publication type:

Article