Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 11

Results: 28

Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1528, doi. 10.1093/bioinformatics/btaa987

By:

Teschendorff, Andrew E;
Maity, Alok K;
Hu, Xue;
Weiyan, Chen;
Lechner, Matthias

Publication type:

Article

Dhaka: variational autoencoder for unmasking tumor heterogeneity from single cell genomic data.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1535, doi. 10.1093/bioinformatics/btz095

By:

Rashid, Sabrina;
Shah, Sohrab;
Bar-Joseph, Ziv;
Pandya, Ravi

Publication type:

Article

Morphing projections: a new visual technique for fast and interactive large-scale analysis of biomedical datasets.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1571, doi. 10.1093/bioinformatics/btaa989

By:

Díaz, Ignacio;
Enguita, José M;
González, Ana;
García, Diego;
Cuadrado, Abel A;
Chiara, María D;
Valdés, Nuria

Publication type:

Article

METADOCK 2: a high-throughput parallel metaheuristic scheme for molecular docking.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1515, doi. 10.1093/bioinformatics/btz958

By:

Imbernón, Baldomero;
Serrano, Antonio;
Bueno-Crespo, Andrés;
Abellán, José L;
Pérez-Sánchez, Horacio;
Cecilia, José M

Publication type:

Article

CpGtools: a python package for DNA methylation analysis.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1598, doi. 10.1093/bioinformatics/btz916

By:

Wei, Ting;
Nie, Jinfu;
Larson, Nicholas B;
Ye, Zhenqing;
Eckel-Passow, Jeanette E;
Robertson, Keith D;
Kocher, Jean-Pierre A;
Wang, Liguo

Publication type:

Article

Revealing dynamic regulations and the related key proteins of myeloma-initiating cells by integrating experimental data into a systems biological model.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1554, doi. 10.1093/bioinformatics/btz542

By:

Zhang, Le;
Liu, Guangdi;
Kong, Meijing;
Li, Tingting;
Wu, Dan;
Zhou, Xiaobo;
Yang, Chuanwei;
Xia, Lei;
Yang, Zhenzhou;
Chen, Luonan

Publication type:

Article

A novel constrained reconstruction model towards high-resolution subtomogram averaging.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1616, doi. 10.1093/bioinformatics/btz787

By:

Han, Renmin;
Li, Lun;
Yang, Peng;
Zhang, Fa;
Gao, Xin

Publication type:

Article

mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1544, doi. 10.1093/bioinformatics/btz306

By:

Kang, Hyejin;
Ahn, Hongryul;
Jo, Kyuri;
Oh, Minsik;
Kim, Sun

Publication type:

Article

Robustifying genomic classifiers to batch effects via ensemble learning.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1521, doi. 10.1093/bioinformatics/btaa986

By:

Zhang, Yuqing;
Patil, Prasad;
Johnson, W. Evan;
Parmigiani, Giovanni

Publication type:

Article

SurVIndel: improving CNV calling from high-throughput sequencing data through statistical testing.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1497, doi. 10.1093/bioinformatics/btz261

By:

Rajaby, Ramesh;
Sung, Wing-Kin

Publication type:

Article

Brain Predictability toolbox: a Python library for neuroimaging-based machine learning.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1637, doi. 10.1093/bioinformatics/btaa974

By:

Hahn, Sage;
Yuan, De Kang;
Thompson, Wesley K;
Owens, Max;
Allgaier, Nicholas;
Garavan, Hugh

Publication type:

Article

MiRKAT: kernel machine regression-based global association tests for the microbiome.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1595, doi. 10.1093/bioinformatics/btaa951

By:

Wilson, Nehemiah;
Zhao, Ni;
Zhan, Xiang;
Koh, Hyunwook;
Fu, Weijia;
Chen, Jun;
Li, Hongzhe;
Wu, Michael C;
Plantinga, Anna M

Publication type:

Article

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1506, doi. 10.1093/bioinformatics/btz082

By:

Chang, Jia-Ming;
Floden, Evan W;
Herrero, Javier;
Gascuel, Olivier;
Tommaso, Paolo Di;
Notredame, Cedric

Publication type:

Article

Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1489, doi. 10.1093/bioinformatics/bty381

By:

Zeira, Ron;
Shamir, Ron

Publication type:

Article

MUGAN: multi-GPU accelerated AmpliconNoise server for rapid microbial diversity assessment.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1562, doi. 10.1093/bioinformatics/bty096

By:

Lee, Byunghan;
Min, Hyeyoung;
Yoon, Sungroh

Publication type:

Article

EBglmnet: a comprehensive R package for sparse generalized linear regression models.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1627, doi. 10.1093/bioinformatics/btw143

By:

Huang, Anhui;
Liu, Dianting

Publication type:

Article

A span-graph neural model for overlapping entity relation extraction in biomedical texts.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1581, doi. 10.1093/bioinformatics/btaa993

By:

Fei, Hao;
Zhang, Yue;
Ren, Yafeng;
Ji, Donghong

Publication type:

Article

keras_dna: a wrapper for fast implementation of deep learning models in genomics.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1593, doi. 10.1093/bioinformatics/btaa929

By:

Routhier, Etienne;
Kamruddin, Ayman Bin;
Mozziconacci, Julien

Publication type:

Article

BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1607, doi. 10.1093/bioinformatics/btaa928

By:

Khan, Aziz;
Puig, Rafael Riudavets;
Boddie, Paul;
Mathelier, Anthony

Publication type:

Article

Minirmd: accurate and fast duplicate removal tool for short reads via multiple minimizers.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1604, doi. 10.1093/bioinformatics/btaa915

By:

Liu, Yuansheng;
Zhang, Xiaocai;
Zou, Quan;
Zeng, Xiangxiang

Publication type:

Article

2020 ISCB Overton Prize: Jian Peng.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1630, doi. 10.1093/bioinformatics/btaa510

By:

Fogg, Christiana N;
Kovats, Diane E;
Shamir, Ron

Publication type:

Article

Phosphomatics: interactive interrogation of substrate–kinase networks in global phosphoproteomics datasets.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1635, doi. 10.1093/bioinformatics/btaa916

By:

Leeming, Michael G;
O'Callaghan, Sean;
Licata, Luana;
Iannuccelli, Marta;
Surdo, Prisca Lo;
Micarelli, Elisa;
Ang, Ching-Seng;
Nie, Shuai;
Varshney, Swati;
Ameen, Sadia;
Cheng, Heung-Chin;
Williamson, Nicholas A

Publication type:

Article

SolupHred: a server to predict the pH-dependent aggregation of intrinsically disordered proteins.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1602, doi. 10.1093/bioinformatics/btaa909

By:

Pintado, Carlos;
Santos, Jaime;
Iglesias, Valentín;
Ventura, Salvador

Publication type:

Article

SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1610, doi. 10.1093/bioinformatics/btaa903

By:

Hafez, Ahmed;
Futami, Ricardo;
Arastehfar, Amir;
Daneshnia, Farnaz;
Miguel, Ana;
Roig, Francisco J.;
Soriano, Beatriz;
Perez-Sánchez, Jaume;
Boekhout, Teun;
Gabaldón, Toni;
Llorens, Carlos

Publication type:

Article

NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1600, doi. 10.1093/bioinformatics/btaa900

By:

Rodríguez-Pérez, Héctor;
Ciuffreda, Laura;
Flores, Carlos

Publication type:

Article

UNRES-Dock—protein–protein and peptide–protein docking by coarse-grained replica-exchange MD simulations.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1613, doi. 10.1093/bioinformatics/btaa897

By:

Krupa, Paweł;
Karczyńska, Agnieszka S;
Mozolewska, Magdalena A;
Liwo, Adam;
Czaplewski, Cezary

Publication type:

Article

Sigflow: an automated and comprehensive pipeline for cancer genome mutational signature analysis.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1590, doi. 10.1093/bioinformatics/btaa895

By:

Wang, Shixiang;
Tao, Ziyu;
Wu, Tao;
Liu, Xue-Song

Publication type:

Article

CYBERTRACK2.0: zero-inflated model-based cell clustering and population tracking method for longitudinal mass cytometry data.

Published in:

Bioinformatics, 2021, v. 37, n. 11, p. 1632, doi. 10.1093/bioinformatics/btaa873

By:

Minoura, Kodai;
Abe, Ko;
Maeda, Yuka;
Nishikawa, Hiroyoshi;
Shimamura, Teppei

Publication type:

Article