Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 8

Results: 62

Lep-Anchor: automated construction of linkage map anchored haploid genomes.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2359, doi. 10.1093/bioinformatics/btz978

By:

Rastas, Pasi

Publication type:

Article

ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2602, doi. 10.1093/bioinformatics/btz976

By:

Karatzas, Evangelos;
Zamora, Juan Eiros;
Athanasiadis, Emmanouil;
Dellis, Dimitris;
Cournia, Zoe;
Spyrou, George M

Publication type:

Article

Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2352, doi. 10.1093/bioinformatics/btz975

By:

Yang, Guodong;
Ma, Aiqun;
Qin, Zhaohui S;
Chen, Li

Publication type:

Article

MatchMixeR: a cross-platform normalization method for gene expression data integration.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2486, doi. 10.1093/bioinformatics/btz974

By:

Zhang, Serin;
Shao, Jiang;
Yu, Disa;
Qiu, Xing;
Zhang, Jinfeng

Publication type:

Article

Fast zero-inflated negative binomial mixed modeling approach for analyzing longitudinal metagenomics data.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2345, doi. 10.1093/bioinformatics/btz973

By:

Zhang, Xinyan;
Yi, Nengjun

Publication type:

Article

Differential Expression Gene Explorer (DrEdGE): a tool for generating interactive online visualizations of gene expression datasets.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2581, doi. 10.1093/bioinformatics/btz972

By:

Tintori, Sophia C;
Golden, Patrick;
Goldstein, Bob

Publication type:

Article

Gapsplit: efficient random sampling for non-convex constraint-based models.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2623, doi. 10.1093/bioinformatics/btz971

By:

Keaty, Thomas C;
Jensen, Paul A

Publication type:

Article

PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2337, doi. 10.1093/bioinformatics/btz964

By:

Goussarov, Gleb;
Cleenwerck, Ilse;
Mysara, Mohamed;
Leys, Natalie;
Monsieurs, Pieter;
Tahon, Guillaume;
Carlier, Aurélien;
Vandamme, Peter;
Houdt, Rob Van

Publication type:

Article

SANPolyA: a deep learning method for identifying Poly(A) signals.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2393, doi. 10.1093/bioinformatics/btz970

By:

Yu, Haitao;
Dai, Zhiming

Publication type:

Article

Morbigenous brain region and gene detection with a genetically evolved random neural network cluster approach in late mild cognitive impairment.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2561, doi. 10.1093/bioinformatics/btz967

By:

Bi, Xia-an;
Liu, Yingchao;
Xie, Yiming;
Hu, Xi;
Jiang, Qinghua

Publication type:

Article

BiORSEO: a bi-objective method to predict RNA secondary structures with pseudoknots using RNA 3D modules.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2451, doi. 10.1093/bioinformatics/btz962

By:

Becquey, Louis;
Angel, Eric;
Tahi, Fariza

Publication type:

Article

iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2611, doi. 10.1093/bioinformatics/btz961

By:

Pham, Thang V;
Henneman, Alex A;
Jimenez, Connie R

Publication type:

Article

Bringing data from curated pathway resources to Cytoscape with OmniPath.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2632, doi. 10.1093/bioinformatics/btz968

By:

Ceccarelli, Francesco;
Turei, Denes;
Gabor, Attila;
Saez-Rodriguez, Julio

Publication type:

Article

cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2620, doi. 10.1093/bioinformatics/btz969

By:

Balaur, Irina;
Roy, Ludovic;
Mazein, Alexander;
Karaca, S Gökberk;
Dogrusoz, Ugur;
Barillot, Emmanuel;
Zinovyev, Andrei

Publication type:

Article

DeepSimulator1.5: a more powerful, quicker and lighter simulator for Nanopore sequencing.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2578, doi. 10.1093/bioinformatics/btz963

By:

Li, Yu;
Wang, Sheng;
Bi, Chongwei;
Qiu, Zhaowen;
Li, Mo;
Gao, Xin

Publication type:

Article

Neural inductive matrix completion with graph convolutional networks for miRNA-disease association prediction.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2538, doi. 10.1093/bioinformatics/btz965

By:

Li, Jin;
Zhang, Sai;
Liu, Tao;
Ning, Chenxi;
Zhang, Zhuoxuan;
Zhou, Wei

Publication type:

Article

ipyrad: Interactive assembly and analysis of RADseq datasets.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2592, doi. 10.1093/bioinformatics/btz966

By:

Eaton, Deren A R;
Overcast, Isaac

Publication type:

Article

BCdatabaser: on-the-fly reference database creation for (meta-)barcoding.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2630, doi. 10.1093/bioinformatics/btz960

By:

Keller, Alexander;
Hohlfeld, Sonja;
Kolter, Andreas;
Schultz, Jörg;
Gemeinholzer, Birgit;
Ankenbrand, Markus J

Publication type:

Article

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2636, doi. 10.1093/bioinformatics/btz959

By:

Drysdale, Rachel;
Cook, Charles E;
Petryszak, Robert;
Baillie-Gerritsen, Vivienne;
Barlow, Mary;
Gasteiger, Elisabeth;
Gruhl, Franziska;
Haas, Jürgen;
Lanfear, Jerry;
Lopez, Rodrigo;
Redaschi, Nicole;
Stockinger, Heinz;
Teixeira, Daniel;
Venkatesan, Aravind;
Forum, Elixir Core Data Resource;
Blomberg, Niklas;
Durinx, Christine;
McEntyre, Johanna

Publication type:

Article

FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2575, doi. 10.1093/bioinformatics/btz957

By:

Anand, Swadha;
Kuntal, Bhusan K;
Mohapatra, Anwesha;
Bhatt, Vineet;
Mande, Sharmila S

Publication type:

Article

Bioinformatics pipeline using JUDI: Just Do It!

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2572, doi. 10.1093/bioinformatics/btz956

By:

Pal, Soumitra;
Przytycka, Teresa M

Publication type:

Article

qgg: an R package for large-scale quantitative genetic analyses.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2614, doi. 10.1093/bioinformatics/btz955

By:

Rohde, Palle Duun;
Sørensen, Izel Fourie;
Sørensen, Peter

Publication type:

Article

A deep learning architecture for metabolic pathway prediction.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2547, doi. 10.1093/bioinformatics/btz954

By:

Baranwal, Mayank;
Magner, Abram;
Elvati, Paolo;
Saldinger, Jacob;
Violi, Angela;
Hero, Alfred O

Publication type:

Article

SMART: SuperMaximal approximate repeats tool.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2589, doi. 10.1093/bioinformatics/btz953

By:

Ayad, Lorraine A K;
Charalampopoulos, Panagiotis;
Pissis, Solon P

Publication type:

Article

VEF: a variant filtering tool based on ensemble methods.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2328, doi. 10.1093/bioinformatics/btz952

By:

Zhang, Chuanyi;
Ochoa, Idoia

Publication type:

Article

Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2530, doi. 10.1093/bioinformatics/btz951

By:

Sun, Hui-Zeng;
Zhou, Mi;
Wang, Ou;
Chen, Yanhong;
Liu, Jian-Xin;
Guan, Le Luo

Publication type:

Article

LiPLike: towards gene regulatory network predictions of high certainty.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2522, doi. 10.1093/bioinformatics/btz950

By:

Magnusson, Rasmus;
Gustafsson, Mika

Publication type:

Article

Causal network perturbations for instance-specific analysis of single cell and disease samples.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2515, doi. 10.1093/bioinformatics/btz949

By:

Buschur, Kristina L;
Chikina, Maria;
Benos, Panayiotis V

Publication type:

Article

Regional imaging genetic enrichment analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2554, doi. 10.1093/bioinformatics/btz948

By:

Yao, Xiaohui;
Cong, Shan;
Yan, Jingwen;
Risacher, Shannon L;
Saykin, Andrew J;
Moore, Jason H;
Shen, Li;
Consortium, UK Brain Expression;
Initiative, for the Alzheimer's Disease Neuroimaging

Publication type:

Article

LPM: a latent probit model to characterize the relationship among complex traits using summary statistics from multiple GWASs and functional annotations.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2506, doi. 10.1093/bioinformatics/btz947

By:

Ming, Jingsi;
Wang, Tao;
Yang, Can

Publication type:

Article

AQUA-DUCT 1.0: structural and functional analysis of macromolecules from an intramolecular voids perspective.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2599, doi. 10.1093/bioinformatics/btz946

By:

Magdziarz, Tomasz;
Mitusińska, Karolina;
Bzówka, Maria;
Raczyńska, Agata;
Stańczak, Agnieszka;
Banas, Michał;
Bagrowska, Weronika;
Góra, Artur

Publication type:

Article

LOBSTER: an environment to design bioimage analysis workflows for large and complex fluorescence microscopy data.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2634, doi. 10.1093/bioinformatics/btz945

By:

Tosi, Sébastien;
Bardia, Lídia;
Filgueira, Maria Jose;
Calon, Alexandre;
Colombelli, Julien

Publication type:

Article

PheGWAS: a new dimension to visualize GWAS across multiple phenotypes.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2500, doi. 10.1093/bioinformatics/btz944

By:

George, Gittu;
Gan, Sushrima;
Huang, Yu;
Appleby, Philip;
Nar, A S;
Venkatesan, Radha;
Mohan, Viswanathan;
Palmer, Colin N A;
Doney, Alex S F

Publication type:

Article

CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2443, doi. 10.1093/bioinformatics/btz943

By:

Liu, Jun;
Zhou, Xiao-Gen;
Zhang, Yang;
Zhang, Gui-Jun

Publication type:

Article

A haplotype-aware de novo assembly of related individuals using pedigree sequence graph.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2385, doi. 10.1093/bioinformatics/btz942

By:

Garg, Shilpa;
Aach, John;
Li, Heng;
Sebenius, Isaac;
Durbin, Richard;
Church, George

Publication type:

Article

A novel method SEProm for prokaryotic promoter prediction based on DNA structure and energetics.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2375, doi. 10.1093/bioinformatics/btz941

By:

Mishra, Akhilesh;
Dhanda, Sahil;
Siwach, Priyanka;
Aggarwal, Shruti;
Jayaram, B

Publication type:

Article

Complexity measures of the mature miRNA for improving pre-miRNAs prediction.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2319, doi. 10.1093/bioinformatics/btz940

By:

Raad, Jonathan;
Stegmayer, Georgina;
Milone, Diego H

Publication type:

Article

iMIRAGE: an R package to impute microRNA expression using protein-coding genes.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2608, doi. 10.1093/bioinformatics/btz939

By:

Nath, Aritro;
Chang, Jeremy;
Huang, R Stephanie

Publication type:

Article

PDEparams: parameter fitting toolbox for partial differential equations in python.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2618, doi. 10.1093/bioinformatics/btz938

By:

Parra-Rojas, César;
Hernandez-Vargas, Esteban A

Publication type:

Article

ngsReports: a Bioconductor package for managing FastQC reports and other NGS related log files.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2587, doi. 10.1093/bioinformatics/btz937

By:

Ward, Christopher M;
To, Thu-Hien;
Pederson, Stephen M

Publication type:

Article

scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2474, doi. 10.1093/bioinformatics/btz936

By:

Feng, Zhanying;
Ren, Xianwen;
Fang, Yuan;
Yin, Yining;
Huang, Chutian;
Zhao, Yimin;
Wang, Yong

Publication type:

Article

Corrigendum to: Single-sample landscape entropy reveals the imminent phase transition during disease progression.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2644, doi. 10.1093/bioinformatics/btz935

By:

Liu, Rui;
Chen, Pei;
Chen, Luonan

Publication type:

Article

GlyMDB: Glycan Microarray Database and analysis toolset.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2438, doi. 10.1093/bioinformatics/btz934

By:

Cao, Yiwei;
Park, Sang-Jun;
Mehta, Akul Y;
Cummings, Richard D;
Im, Wonpil

Publication type:

Article

HaploTypo: a variant-calling pipeline for phased genomes.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2569, doi. 10.1093/bioinformatics/btz933

By:

Pegueroles, Cinta;
Mixão, Verónica;
Carreté, Laia;
Molina, Manu;
Gabaldón, Toni

Publication type:

Article

Platform-integrated mRNA isoform quantification.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2466, doi. 10.1093/bioinformatics/btz932

By:

Sun, Jiao;
Chang, Jae-Woong;
Zhang, Teng;
Yong, Jeongsik;
Kuang, Rui;
Zhang, Wei

Publication type:

Article

ShinyGO: a graphical gene-set enrichment tool for animals and plants.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2628, doi. 10.1093/bioinformatics/btz931

By:

Ge, Steven Xijin;
Jung, Dongmin;
Yao, Runan

Publication type:

Article

VarGen: an R package for disease-associated variant discovery and annotation.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2626, doi. 10.1093/bioinformatics/btz930

By:

Molitor, Corentin;
Brember, Matt;
Mohareb, Fady

Publication type:

Article

FFLtool: a web server for transcription factor and miRNA feed forward loop analysis in human.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2605, doi. 10.1093/bioinformatics/btz929

By:

Xie, Gui-Yan;
Xia, Mengxuan;
Miao, Ya-Ru;
Luo, Mei;
Zhang, Qiong;
Guo, An-Yuan

Publication type:

Article

pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2584, doi. 10.1093/bioinformatics/btz928

By:

Labudová, Dominika;
Hon, Jiří;
Lexa, Matej

Publication type:

Article

SAMMI: a semi-automated tool for the visualization of metabolic networks.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2616, doi. 10.1093/bioinformatics/btz927

By:

Schultz, Andre;
Akbani, Rehan

Publication type:

Article