Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 5

Results: 51

µ-ANT: semantic microaggregation-based anonymization tool.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1652, doi. 10.1093/bioinformatics/btz792

By:

Sánchez, David;
Martínez, Sergio;
Domingo-Ferrer, Josep;
Soria-Comas, Jordi;
Batet, Montserrat

Publication type:

Article

Patch-DCA: improved protein interface prediction by utilizing structural information and clustering DCA scores.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1460, doi. 10.1093/bioinformatics/btz791

By:

Vajdi, Amir;
Zarringhalam, Kourosh;
Haspel, Nurit

Publication type:

Article

CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1577, doi. 10.1093/bioinformatics/btz790

By:

Liu, Yu;
Bible, Paul W;
Zou, Bin;
Liang, Qiaoxing;
Dong, Cong;
Wen, Xiaofeng;
Li, Yan;
Ge, Xiaofei;
Li, Xifang;
Deng, Xiuli;
Ma, Rong;
Guo, Shixin;
Liang, Juanran;
Chen, Tingting;
Pan, Wenliang;
Liu, Lixin;
Chen, Wei;
Wang, Xueqin;
Wei, Lai

Publication type:

Article

DPre: computational identification of differentiation bias and genes underlying cell type conversions.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1637, doi. 10.1093/bioinformatics/btz789

By:

Steffens, Simon;
Fu, Xiuling;
He, Fangfang;
Li, Yuhao;
Babarinde, Isaac A;
Hutchins, Andrew P

Publication type:

Article

Topological data analysis quantifies biological nano-structure from single molecule localization microscopy.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1614, doi. 10.1093/bioinformatics/btz788

By:

Pike, Jeremy A;
Khan, Abdullah O;
Pallini, Chiara;
Thomas, Steven G;
Mund, Markus;
Ries, Jonas;
Poulter, Natalie S;
Styles, Iain B

Publication type:

Article

ADDO: a comprehensive toolkit to detect, classify and visualize additive and non-additive quantitative trait loci.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1517, doi. 10.1093/bioinformatics/btz786

By:

Cui, Leilei;
Yang, Bin;
Pontikos, Nikolas;
Mott, Richard;
Huang, Lusheng

Publication type:

Article

Matched Forest: supervised learning for high-dimensional matched case–control studies.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1570, doi. 10.1093/bioinformatics/btz785

By:

Zadeh, Nooshin Shomal;
Lin, Sangdi;
Runger, George C

Publication type:

Article

SpliceLauncher: a tool for detection, annotation and relative quantification of alternative junctions from RNAseq data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1634, doi. 10.1093/bioinformatics/btz784

By:

Leman, Raphaël;
Harter, Valentin;
Atkinson, Alexandre;
Davy, Grégoire;
Rousselin, Antoine;
Muller, Etienne;
Castéra, Laurent;
Lemoine, Fréderic;
de la Grange, Pierre;
Guillaud-Bataille, Marine;
Vaur, Dominique;
Krieger, Sophie

Publication type:

Article

DRUDIT: web-based DRUgs DIscovery Tools to design small molecules as modulators of biological targets.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1562, doi. 10.1093/bioinformatics/btz783

By:

Lauria, Antonino;
Mannino, Salvatore;
Gentile, Carla;
Mannino, Giuseppe;
Martorana, Annamaria;
Peri, Daniele

Publication type:

Article

An improved encoding of genetic variation in a Burrows–Wheeler transform.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1413, doi. 10.1093/bioinformatics/btz782

By:

Büchler, Thomas;
Ohlebusch, Enno

Publication type:

Article

BiomeNet: a database for construction and analysis of functional interaction networks for any species with a sequenced genome.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1584, doi. 10.1093/bioinformatics/btz776

By:

Kim, Eiru;
Bae, Dasom;
Yang, Sunmo;
Ko, Gunhwan;
Lee, Sungho;
Lee, Byungwook;
Lee, Insuk

Publication type:

Article

3D flow field estimation and assessment for live cell fluorescence microscopy.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1317, doi. 10.1093/bioinformatics/btz780

By:

Manandhar, Sandeep;
Bouthemy, Patrick;
Welf, Erik;
Danuser, Gaudenz;
Roudot, Philippe;
Kervrann, Charles

Publication type:

Article

mCSM-AB2: guiding rational antibody design using graph-based signatures.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1453, doi. 10.1093/bioinformatics/btz779

By:

Myung, Yoochan;
Rodrigues, Carlos H M;
Ascher, David B;
Pires, Douglas E V

Publication type:

Article

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1484, doi. 10.1093/bioinformatics/btz778

By:

Strauss, Magdalena E;
Kirk, Paul D W;
Reid, John E;
Wernisch, Lorenz

Publication type:

Article

Mat_peptide: comprehensive annotation of mature peptides from polyproteins in five virus families.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1627, doi. 10.1093/bioinformatics/btz777

By:

Larsen, Christopher N;
Sun, Guangyu;
Li, Xiaomei;
Zaremba, Sam;
Zhao, Hongtao;
He, Sherry;
Zhou, Liwei;
Kumar, Sanjeev;
Desborough, Vince;
Klem, Edward B

Publication type:

Article

Exploiting transfer learning for the reconstruction of the human gene regulatory network.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1553, doi. 10.1093/bioinformatics/btz781

By:

Mignone, Paolo;
Pio, Gianvito;
D'Elia, Domenica;
Ceci, Michelangelo

Publication type:

Article

Studying 3D genome evolution using genomic sequence.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1367, doi. 10.1093/bioinformatics/btz775

By:

Mourad, Raphaël

Publication type:

Article

Domain-invariant features for mechanism of action prediction in a multi-cell-line drug screen.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1607, doi. 10.1093/bioinformatics/btz774

By:

Boyd, Joseph C;
Pinheiro, Alice;
Nery, Elaine Del;
Reyal, Fabien;
Walter, Thomas

Publication type:

Article

SOLart: a structure-based method to predict protein solubility and aggregation.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1445, doi. 10.1093/bioinformatics/btz773

By:

Hou, Qingzhen;
Kwasigroch, Jean Marc;
Rooman, Marianne;
Pucci, Fabrizio

Publication type:

Article

Cancer classification of single-cell gene expression data by neural network.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1360, doi. 10.1093/bioinformatics/btz772

By:

Kim, Bong-Hyun;
Yu, Kijin;
Lee, Peter C W

Publication type:

Article

Deep-learning approach to identifying cancer subtypes using high-dimensional genomic data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1476, doi. 10.1093/bioinformatics/btz769

By:

Chen, Runpu;
Yang, Le;
Goodison, Steve;
Sun, Yijun

Publication type:

Article

MIRUReader: MIRU-VNTR typing directly from long sequencing reads.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1625, doi. 10.1093/bioinformatics/btz771

By:

Tang, Cheng Yee;
Ong, Rick Twee-Hee

Publication type:

Article

Expectation pooling: an effective and interpretable pooling method for predicting DNA–protein binding.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1405, doi. 10.1093/bioinformatics/btz768

By:

Luo, Xiao;
Tu, Xinming;
Ding, Yang;
Gao, Ge;
Deng, Minghua

Publication type:

Article

BCrystal: an interpretable sequence-based protein crystallization predictor.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1429, doi. 10.1093/bioinformatics/btz762

By:

Elbasir, Abdurrahman;
Mall, Raghvendra;
Kunji, Khalid;
Rawi, Reda;
Islam, Zeyaul;
Chuang, Gwo-Yu;
Kolatkar, Prasanna R;
Bensmail, Halima

Publication type:

Article

FullMeSH: improving large-scale MeSH indexing with full text.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1533, doi. 10.1093/bioinformatics/btz756

By:

Dai, Suyang;
You, Ronghui;
Lu, Zhiyong;
Huang, Xiaodi;
Mamitsuka, Hiroshi;
Zhu, Shanfeng

Publication type:

Article

ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1644, doi. 10.1093/bioinformatics/btz761

By:

Martyushenko, Nikolay;
Almaas, Eivind

Publication type:

Article

dbInDel: a database of enhancer-associated insertion and deletion variants by analysis of H3K27ac ChIP-Seq.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1649, doi. 10.1093/bioinformatics/btz770

By:

Huang, Moli;
Wang, Yunpeng;
Yang, Manqiu;
Yan, Jun;
Yang, Henry;
Zhuang, Wenzhuo;
Xu, Ying;
Koeffler, H Phillip;
Lin, De-Chen;
Chen, Xi

Publication type:

Article

Eagle: multi-locus association mapping on a genome-wide scale made routine.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1509, doi. 10.1093/bioinformatics/btz759

By:

George, Andrew W;
Verbyla, Arunas;
Bowden, Joshua

Publication type:

Article

Quantifying functional impact of non-coding variants with multi-task Bayesian neural network.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1397, doi. 10.1093/bioinformatics/btz767

By:

Xu, Chencheng;
Liu, Qiao;
Zhou, Jianyu;
Xie, Minzhu;
Feng, Jianxing;
Jiang, Tao

Publication type:

Article

Dynalogo: an interactive sequence logo with dynamic thresholding of matched quantitative proteomic data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1632, doi. 10.1093/bioinformatics/btz766

By:

Lafontaine, Adam T;
Mayer, Bruce J;
Machida, Kazuya

Publication type:

Article

MetumpX—a metabolomics support package for untargeted mass spectrometry.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1647, doi. 10.1093/bioinformatics/btz765

By:

Wajid, Bilal;
Iqbal, Hasan;
Jamil, Momina;
Rafique, Hafsa;
Anwar, Faria

Publication type:

Article

AggreRATE-Pred: a mathematical model for the prediction of change in aggregation rate upon point mutation.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1439, doi. 10.1093/bioinformatics/btz764

By:

Rawat, Puneet;
Prabakaran, R;
Kumar, Sandeep;
Gromiha, M Michael

Publication type:

Article

Feature selection may improve deep neural networks for the bioinformatics problems.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1542, doi. 10.1093/bioinformatics/btz763

By:

Chen, Zheng;
Pang, Meng;
Zhao, Zixin;
Li, Shuainan;
Miao, Rui;
Zhang, Yifan;
Feng, Xiaoyue;
Feng, Xin;
Zhang, Yexian;
Duan, Meiyu;
Huang, Lan;
Zhou, Fengfeng

Publication type:

Article

Single-sample landscape entropy reveals the imminent phase transition during disease progression.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1522, doi. 10.1093/bioinformatics/btz758

By:

Liu, Rui;
Chen, Pei;
Chen, Luonan

Publication type:

Article

iATC-NRAKEL: an efficient multi-label classifier for recognizing anatomical therapeutic chemical classes of drugs.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1391, doi. 10.1093/bioinformatics/btz757

By:

Zhou, Jian-Peng;
Chen, Lei;
Guo, Zi-Han

Publication type:

Article

BCSExplorer: a customized biosynthetic chemical space explorer with multifunctional objective function analysis.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1642, doi. 10.1093/bioinformatics/btz755

By:

Tian, Yu;
Wu, Ling;
Yuan, Le;
Ding, Shaozhen;
Chen, Fu;
Zhang, Tong;
Ren, Ailin;
Zhang, Dachuan;
Tu, Weizhong;
Chen, Junni;
Hu, Qian-Nan

Publication type:

Article

SynQuant: an automatic tool to quantify synapses from microscopy images.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1599, doi. 10.1093/bioinformatics/btz760

By:

Wang, Yizhi;
Wang, Congchao;
Ranefall, Petter;
Broussard, Gerard Joey;
Wang, Yinxue;
Shi, Guilai;
Lyu, Boyu;
Wu, Chiung-Ting;
Wang, Yue;
Tian, Lin;
Yu, Guoqiang

Publication type:

Article

Computationally predicted gene regulatory networks in molluscan biomineralization identify extracellular matrix production and ion transportation pathways.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1326, doi. 10.1093/bioinformatics/btz754

By:

Sleight, Victoria A;
Antczak, Philipp;
Falciani, Francesco;
Clark, Melody S

Publication type:

Article

RNAIndel: discovering somatic coding indels from tumor RNA-Seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1382, doi. 10.1093/bioinformatics/btz753

By:

Hagiwara, Kohei;
Ding, Liang;
Edmonson, Michael N;
Rice, Stephen V;
Newman, Scott;
Easton, John;
Dai, Juncheng;
Meshinchi, Soheil;
Ries, Rhonda E;
Rusch, Michael;
Zhang, Jinghui

Publication type:

Article

SPARSim single cell: a count data simulator for scRNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1468, doi. 10.1093/bioinformatics/btz752

By:

Baruzzo, Giacomo;
Patuzzi, Ilaria;
Camillo, Barbara Di

Publication type:

Article

NMF-RI: blind spectral unmixing of highly mixed multispectral flow and image cytometry data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1590, doi. 10.1093/bioinformatics/btz751

By:

Jiménez-Sánchez, Daniel;
Ariz, Mikel;
Morgado, José Mário;
Cortés-Domínguez, Iván;
Ortiz-de-Solórzano, Carlos

Publication type:

Article

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1351, doi. 10.1093/bioinformatics/btz750

By:

Spurr, Liam F;
Alomran, Nawaf;
Bousounis, Pavlos;
Reece-Stremtan, Dacian;
Prashant, N M;
Liu, Hongyu;
Słowiński, Piotr;
Li, Muzi;
Zhang, Qianqian;
Sein, Justin;
Asher, Gabriel;
Crandall, Keith A;
Tsaneva-Atanasova, Krasimira;
Horvath, Anelia

Publication type:

Article

Bayesian weighted Mendelian randomization for causal inference based on summary statistics.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1501, doi. 10.1093/bioinformatics/btz749

By:

Zhao, Jia;
Ming, Jingsi;
Hu, Xianghong;
Chen, Gang;
Liu, Jin;
Yang, Can

Publication type:

Article

NITUMID: Nonnegative matrix factorization-based Immune-TUmor MIcroenvironment Deconvolution.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1344, doi. 10.1093/bioinformatics/btz748

By:

Tang, Daiwei;
Park, Seyoung;
Zhao, Hongyu

Publication type:

Article

γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1622, doi. 10.1093/bioinformatics/btz747

By:

Calabria, Andrea;
Beretta, Stefano;
Merelli, Ivan;
Spinozzi, Giulio;
Brasca, Stefano;
Pirola, Yuri;
Benedicenti, Fabrizio;
Tenderini, Erika;
Bonizzoni, Paola;
Milanesi, Luciano;
Montini, Eugenio

Publication type:

Article

BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1640, doi. 10.1093/bioinformatics/btz746

By:

Yordanov, Pencho;
Stelling, Joerg;
Otero-Muras, Irene

Publication type:

Article

WASPS: web-assisted symbolic plasmid synteny server.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1629, doi. 10.1093/bioinformatics/btz745

By:

Badel, Catherine;
Cunha, Violette Da;
Catchpole, Ryan;
Forterre, Patrick;
Oberto, Jacques

Publication type:

Article

Soft windowing application to improve analysis of high-throughput phenotyping data.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1492, doi. 10.1093/bioinformatics/btz744

By:

Haselimashhadi, Hamed;
Mason, Jeremy C;
Munoz-Fuentes, Violeta;
López-Gómez, Federico;
Babalola, Kolawole;
Acar, Elif F;
Kumar, Vivek;
White, Jacqui;
Flenniken, Ann M;
King, Ruairidh;
Straiton, Ewan;
Seavitt, John Richard;
Gaspero, Angelina;
Garza, Arturo;
Christianson, Audrey E;
Hsu, Chih-Wei;
Reynolds, Corey L;
Lanza, Denise G;
Lorenzo, Isabel;
Green, Jennie R

Publication type:

Article

Fast and flexible coarse-grained prediction of protein folding routes using ensemble modeling and evolutionary sequence variation.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1420, doi. 10.1093/bioinformatics/btz743

By:

Becerra, David;
Butyaev, Alexander;
Waldispühl, Jérôme

Publication type:

Article

Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing.

Published in:

Bioinformatics, 2020, v. 36, n. 5, p. 1333, doi. 10.1093/bioinformatics/btz742

By:

Han, Renmin;
Wang, Sheng;
Gao, Xin

Publication type:

Article